# Generated by roxygen2: do not edit by hand export(AddMetaData) export(AllCloseByRegions) export(AllCoeditedRegions) export(AnnotateResults) export(CountSamplesPerGroup) export(CreateEditingTable) export(CreateOutputDF) export(CreateRdrop) export(FindCorrelatedRegions) export(GetMinPairwiseCor) export(GetSitesLocations) export(MakeModelFormula) export(MarkCoeditedSites) export(MaxSites) export(MeanSites) export(MedianSites) export(OrderSitesByLocation) export(PC1Sites) export(PlotEditingCorrelations) export(SingleCloseByRegion) export(SingleCoeditedRegion) export(SitesToRegion) export(SummarizeAllRegions) export(SummarizeSingleRegion) export(TestAssociations) export(TestSingleRegion) export(TransformToGR) importFrom(BiocGenerics,start) importFrom(GenomeInfoDb,seqnames) importFrom(GenomicRanges,GRanges) importFrom(GenomicRanges,findOverlaps) importFrom(GenomicRanges,makeGRangesFromDataFrame) importFrom(IRanges,IRanges) importFrom(IRanges,subsetByOverlaps) importFrom(S4Vectors,"mcols<-") importFrom(S4Vectors,mcols) importFrom(S4Vectors,subjectHits) importFrom(bumphunter,clusterMaker) importFrom(bumphunter,getSegments) importFrom(corrplot,corrplot) importFrom(logistf,logistf) importFrom(plyr,adply) importFrom(plyr,alply) importFrom(stats,aggregate) importFrom(stats,as.formula) importFrom(stats,binomial) importFrom(stats,coef) importFrom(stats,complete.cases) importFrom(stats,cor) importFrom(stats,drop1) importFrom(stats,gaussian) importFrom(stats,glm) importFrom(stats,lm) importFrom(stats,median) importFrom(stats,p.adjust) importFrom(stats,prcomp) importFrom(stats,vcov) importFrom(survival,Surv) importFrom(survival,coxph)