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README.md
# rigvf: IGVF Catalog from R <img id="rigvf_logo" alt="rigvf logo" src="man/figures/rigvf.png" align="right" width="125"/> <!-- badges: start --> [![Lifecycle: experimental](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental) <!-- badges: end --> *rigvf* provides access the Impact of Genomic Variation on Function (IGVF) Catalog from within R/Bioconductor, allowing integration with Bioconductor resources, classes, and methods. Only limited functionality is currently implemented, mostly centered around associations among genetic variants, genomic elements, and genes. ## Installation Install the development version from [GitHub](https://github.com/IGVF/rigvf) with: ``` r ## install.packages("BiocManager") # if not installed BiocManager::install("IGVF/rigvf") ``` ## Using `rigvf` See the [Accessing data from the IGVF Catalog][] vignette for basic use. See `?catalog_queries` and `?db_queries` for example functions for accessing IGVF data through the Catalog API and ArangoDB API, respectively. [Accessing data from the IGVF Catalog]: https://IGVF.github.io/rigvf/articles/rigvf.html ## Data license For IGVF Catalog data license, see the [IGVF policy page](https://data.igvf.org/policies/).