[](https://travis-ci.org/cannin/rcellminer)
[](https://codecov.io/github/cannin/rcellminer?branch=master)
# RCellminer
This R package provide access to the data and functions to analyze data from [CellMiner](http://discover.nci.nih.gov/cellminer).
# Installation
## Install from GitHub
setRepositories(ind=1:6)
options(repos="http://cran.rstudio.com/")
if (!require("devtools")) install.packages("devtools")
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
if (!require("Biobase")) {
BiocManager::install()
}
BiocManager::install("BiocStyle")
library(devtools)
# Optional for interactive plots
install_github('rCharts', 'ramnathv')
install_github("cannin/rcellminer",
build_vignette=FALSE,
dependencies=TRUE,
args="--no-multiarch",
ref="master")
install_github("github/rcellminerData",
build_vignette=FALSE,
dependencies=TRUE,
args="--no-multiarch",
ref="master")
## Install from local
### Open Project
Open .Rproj file in RStudio
### Install Dependencies
if (require("devtools")) install.packages("devtools")
setRepositories(ind=1:6)
library(devtools)
install_deps(".")
# Run Vignette
Open vignette (Rmd files) from vignettes/ folder and use "Knit HTML" button to generate the HTML file.
