7215e31 (HEAD -> master, origin/master, origin/HEAD) Version bump to 1.7.1 by
Christian Panse <cp@fgcz.ethz.ch>2023-02-06 09:42:42 +0100;
78ae3f8 Replace old cite style with bibentry by
Christian Panse <cp@fgcz.ethz.ch>2023-02-06 09:41:55 +0100;
23f19e9 Add link for codecov and RCMDcheck by
Christian Panse <cp@fgcz.ethz.ch>2022-11-02 08:35:54 +0100;
0795167 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:25:05 -0400;
9be028b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:25:05 -0400;
13c5dd0 Add app.codecov.io to CI by
Christian Panse <cp@fgcz.ethz.ch>2022-09-22 11:33:03 +0200;
6f071fc Mismatches in argument default values; version 1.5.4 by
Christian Panse <cp@fgcz.ethz.ch>2022-08-25 13:54:24 +0200;
8f24c26 BiocStyle::Githubpk cosmetics by
Christian Panse <cp@fgcz.ethz.ch>2022-08-23 07:23:57 +0200;
6da0e7f bump to 1.5.3 by
Christian Panse <cp@fgcz.ethz.ch>2022-08-22 15:24:17 +0200;
ba5035d Add centroid.PreferredNoises by
Christian Panse <cp@fgcz.ethz.ch>2022-08-22 15:19:40 +0200;
1e00c64 Add compomics/ThermoRawFileParser/ by
Christian Panse <cp@fgcz.ethz.ch>2022-08-22 14:57:43 +0200;
7fa8433 Add urldate in bib by
Christian Panse <cp@fgcz.ethz.ch>2022-08-22 14:43:11 +0200;
639677c Version bump 1.5.2 by
Christian Panse <cp@fgcz.ethz.ch>2022-06-13 19:22:38 +0200;
7515eaa Link USI by
Christian Panse <cp@fgcz.ethz.ch>2022-06-13 19:22:09 +0200;
ef71bf1 Adapt affiliation by
Christian Panse <cp@fgcz.ethz.ch>2022-06-13 10:26:21 +0200;
525ee63 Version bump 1.5.1 by
Christian Panse <cp@fgcz.ethz.ch>2022-06-12 20:46:03 +0200;
ad8c851 Add alternative way of chunk options by
Christian Panse <cp@fgcz.ethz.ch>2022-06-12 20:45:11 +0200;
37c20a3 Initial GitHub CI by
Christian Panse <cp@fgcz.ethz.ch>2022-05-25 13:34:26 +0200;
1b0ac1c bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 16:16:17 +0000;
3f84950 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 16:16:17 +0000;
42259db Cosmetic man page fix and version inc by
Christian Panse <cp@fgcz.ethz.ch>2022-04-17 16:19:11 +0200;
65a818a Add readTrailer function by
Christian Panse <cp@fgcz.ethz.ch>2022-04-14 10:21:05 +0200;
7dbcd25 version bump 1.3.6 by
Christian Panse <cp@fgcz.ethz.ch>2022-03-27 15:19:17 +0200;
3e0d0e7 Add monoisotopicMz column to rawrr::readIndex <a href="#48">#48</a> by
Christian Panse <cp@fgcz.ethz.ch>2022-03-19 13:22:59 +0100;
06900f2 Help page cosmetics by
Christian Panse <cp@fgcz.ethz.ch>2022-03-11 16:24:54 +0100;
678e578 Refactor man pages v 1.3.4 by
Christian Panse <cp@fgcz.ethz.ch>2022-03-11 16:16:18 +0100;
c6be00c Update links by
Christian Panse <cp@fgcz.ethz.ch>2022-03-07 10:50:53 +0100;
dca8d2c Cleanup by
Christian Panse <cp@fgcz.ethz.ch>2022-03-07 10:31:10 +0100;
bd42acf Add DOI badge by
Christian Panse <cp@fgcz.ethz.ch>2022-03-06 13:39:40 +0100;
fb62ed2 Adapted Install section by
Christian Panse <cp@fgcz.ethz.ch>2022-02-17 10:02:01 +0100;
1dbc209 Bump version to 1.3.3 by
Christian Panse <cp@fgcz.ethz.ch>2021-12-04 17:31:08 +0100;
36f43e1 Remove ')' in C# by
Christian Panse <cp@fgcz.ethz.ch>2021-12-02 06:17:52 +0100;
1637d6f Add barebone mode in readSpectrum by
Christian Panse <cp@fgcz.ethz.ch>2021-12-01 16:18:34 +0100;
b93311e Fix title in rawrr bib entry by
Christian Panse <cp@fgcz.ethz.ch>2021-11-28 09:59:08 +0100;
3f51e0c Add mono information in vignette file by
Christian Panse <cp@fgcz.ethz.ch>2021-11-28 09:53:02 +0100;
787b995 Merge branch 'master' of git.bioconductor.org:packages/rawrr by
Christian Panse <cp@fgcz.ethz.ch>2021-10-28 12:32:15 +0200;
9e1e233 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 17:10:23 +0000;
6744b0f (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 17:10:23 +0000;
beb0226 Add mono BibTeX entry by
Christian Panse <cp@fgcz.ethz.ch>2021-10-24 15:45:22 +0200;
36f6eac Add CIL to Abbreviation section by
Christian Panse <cp@fgcz.ethz.ch>2021-10-24 11:53:39 +0200;
61610ec Link Biocpkg("MsBackendRawFileReader") in vignette by
Christian Panse <cp@fgcz.ethz.ch>2021-10-15 09:20:31 +0200;
8522654 Add FAQ section in vignette and release v1.1.16 by
Christian Panse <cp@fgcz.ethz.ch>2021-10-08 14:01:30 +0200;
64a2260 fix docu by
Christian Panse <cp@fgcz.ethz.ch>2021-10-01 10:02:06 +0200;
1e98d54 version bump; added new assembly version by
Christian Panse <cp@fgcz.ethz.ch>2021-09-28 08:38:03 +0200;
57ff81e (origin/RELEASE_3_13, RELEASE_3_13) version inc by
Christian Panse <cp@fgcz.ethz.ch>2021-09-14 14:29:11 +0200;
0644854 version inc by
Christian Panse <cp@fgcz.ethz.ch>2021-09-14 14:24:19 +0200;
fc2677c added decimal symbol hint. by
Christian Panse <cp@fgcz.ethz.ch>2021-09-14 14:23:55 +0200;
aadcd82 fixed <a href="#41">#41</a> - onload replace stop by return iff no build system is installed; version bump; by
Christian Panse <cp@fgcz.ethz.ch>2021-07-27 10:38:59 +0200;
0a8381c remove message of tmp file location when generating tic/bpc by
Christian Panse <cp@fgcz.ethz.ch>2021-07-20 12:06:01 +0200;
b6f7587 added precision argument for filter function by
Christian Panse <cp@fgcz.ethz.ch>2021-07-08 11:08:46 +0200;
7e16b8b bug fix remove all temp files by
Christian Panse <cp@fgcz.ethz.ch>2021-07-03 17:10:54 +0200;
e9ad01e added filter R function by
Christian Panse <cp@fgcz.ethz.ch>2021-07-03 14:31:23 +0200;
ce417cf added scan filter in rawrr.exe by
Christian Panse <cp@fgcz.ethz.ch>2021-06-25 16:52:31 +0200;
8e0868c added help page for rawrr.exe by
Christian Panse <cp@fgcz.ethz.ch>2021-06-25 14:41:00 +0200;
be251cd version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-06-17 12:53:42 +0200;
03c65ea set 'knitr::opts_chunk(error=TRUE)' in vignette to get useful error msg; version bump to 1.1.8 by
Christian Panse <cp@fgcz.ethz.ch>2021-06-15 07:08:51 +0200;
7a70612 version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-06-11 11:55:54 +0200;
c047112 roxygen2::roxygenise() by
Christian Panse <cp@fgcz.ethz.ch>2021-06-08 06:59:33 +0200;
b448f8e man page cosmetics by
Christian Panse <cp@fgcz.ethz.ch>2021-06-08 06:58:41 +0200;
db8d0a7 shorted VignetteIndexEntry by
Christian Panse <cp@fgcz.ethz.ch>2021-06-08 06:57:42 +0200;
7a821dd Merge branch 'master' of git.bioconductor.org:packages/rawrr by
Christian Panse <cp@fgcz.ethz.ch>2021-06-07 13:41:34 +0200;
8a60213 cosmetics in yIonSeries code snippet by
Christian Panse <cp@fgcz.ethz.ch>2021-06-07 13:40:49 +0200;
6ecd918 cosmetics of yIonSeries code snippet by
Christian Panse <cp@fgcz.ethz.ch>2021-06-07 13:40:49 +0200;
0fe72fd version bump 1.0.0 -> 1.0.1 by
Christian Panse <cp@fgcz.ethz.ch>2021-06-05 15:50:42 +0200;
a7c9bc9 cosmetic fixes to make 'R CMD check' pass with 0 notes and 0 warnings. by
Christian Panse <cp@fgcz.ethz.ch>2021-06-05 15:41:13 +0200;
5583e3b update rawrr.exe assembly by
Christian Panse <cp@fgcz.ethz.ch>2021-06-05 15:20:40 +0200;
bade2a3 tic/bpc output goes into sep file. stdout/stderr can be used for error logging. by
Christian Panse <cp@fgcz.ethz.ch>2021-06-05 15:16:52 +0200;
f0510f6 removed BinaryFiles by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 19:07:51 +0200;
fbb9e66 code cosmetics by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 19:07:18 +0200;
06bbecd removed debug console output of rawrr.exe by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 19:06:11 +0200;
22fa172 fix typo by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 19:05:49 +0200;
2ac526c version bump to 1.1.5 by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 19:01:05 +0200;
20b79df Improve error handling of system2 call by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 19:00:20 +0200;
409df47 fix version numbering in SystemRequirements by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 17:52:08 +0200;
0e1deb2 refine SystemRequirements by
Christian Panse <cp@fgcz.ethz.ch>2021-06-04 17:38:02 +0200;
1b9b0be redraft by
Christian Panse <cp@fgcz.ethz.ch>2021-05-31 15:55:55 +0200;
6024217 added helper function \code{.checkReaderFunctions}; added Linux package deps in INSTALL; remove console output during system2 call; version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-05-31 14:00:11 +0200;
2f6fa59 inital NEWS by
Christian Panse <cp@fgcz.ethz.ch>2021-05-26 21:43:19 +0200;
ca41408 use |>, replace EH like by copy; version bump 1.1.3 by
Christian Panse <cp@fgcz.ethz.ch>2021-05-26 21:37:42 +0200;
1047979 enable vignette; set error=TRUE flag in vignette; version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-05-26 08:12:09 +0200;
710a20b disable vignette by
Christian Panse <cp@fgcz.ethz.ch>2021-05-26 07:59:34 +0200;
c50114d bump x.y.z version to odd y following creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-05-19 17:03:51 +0000;
c86b855 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-05-19 17:03:51 +0000;
b18a6c9 version inc by
Christian Panse <cp@fgcz.ethz.ch>2021-05-18 15:53:40 +0200;
a3b8c60 refactor summary by
Christian Panse <cp@fgcz.ethz.ch>2021-05-18 14:59:56 +0200;
a48c381 fix rawDiag reference by
Christian Panse <cp@fgcz.ethz.ch>2021-05-18 14:56:21 +0200;
b356926 fix typos by
Christian Panse <cp@fgcz.ethz.ch>2021-05-18 14:46:48 +0200;
eeceea8 added Universal Spectrum Explorer example; version inc 0.99.32 by
Christian Panse <cp@fgcz.ethz.ch>2021-05-14 12:09:02 +0200;
ad1f311 fixed not used undocumented code objects; version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-05-13 09:11:56 +0200;
39b9791 fix broken man page; version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-05-13 07:58:54 +0200;
4e3781a update vignette conclusion by
Christian Panse <cp@fgcz.ethz.ch>2021-05-13 06:46:47 +0200;
a6f1d86 man page cosmetics by
Christian Panse <cp@fgcz.ethz.ch>2021-05-13 06:26:12 +0200;
a94b6b7 Imported tartare in NAMESPACE as well as DESCRIPTION. by
Christian Panse <cp@fgcz.ethz.ch>2021-05-13 05:55:17 +0200;
fbb3a48 fix vignette junk; version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-05-12 18:02:25 +0200;
667573f fix code junk for dll check; version bump by
Christian Panse <cp@fgcz.ethz.ch>2021-05-12 17:51:32 +0200;
9bca300 export .thermofisherlsmsUrl() by
Christian Panse <cp@fgcz.ethz.ch>2021-05-12 17:28:16 +0200;
4cd65a6 fixed rawrrSpectrum constructor default for sim parameter by
Christian Panse <cp@fgcz.ethz.ch>2021-05-12 17:21:18 +0200;
a4f0de8 moved the lion below the abstract by
Christian Panse <cp@fgcz.ethz.ch>2021-05-12 16:39:06 +0200;
43f6cf5 simplyfy vignette abstract by
Christian Panse <cp@fgcz.ethz.ch>2021-05-12 16:23:08 +0200;
6df4367 fix api in Abbreviations by
Christian Panse <cp@fgcz.ethz.ch>2021-05-12 16:05:38 +0200;
