Name Mode Size
..
auc.rawrrChromatogram.Rd 100644 0 kb
basePeak.Rd 100644 0 kb
buildRawrrExe.Rd 100644 2 kb
dependentScan.Rd 100644 1 kb
faimsVoltageOn.Rd 100644 0 kb
installRawFileReaderDLLs.Rd 100644 2 kb
installRawrrExe.Rd 100644 1 kb
is.rawrrChromatogram.Rd 100644 1 kb
is.rawrrSpectrum.Rd 100644 1 kb
is.rawrrSpectrumSet.Rd 100644 1 kb
makeAccessor.Rd 100644 1 kb
massRange.Rd 100644 1 kb
masterScan.Rd 100644 1 kb
new_rawrrSpectrum.Rd 100644 1 kb
plot.rawrrChromatogram.Rd 100644 1 kb
plot.rawrrChromatogramSet.Rd 100644 1 kb
plot.rawrrSpectrum.Rd 100644 1 kb
print.rawrrSpectrum.Rd 100644 1 kb
rawrrAssemblyPath.Rd 100644 0 kb
rawrrSpectrum.Rd 100644 1 kb
readChromatogram.Rd 100644 3 kb
readFileHeader.Rd 100644 1 kb
readIndex.Rd 100644 1 kb
readSpectrum.Rd 100644 5 kb
sampleFilePath.Rd 100644 1 kb
scanNumber.Rd 100644 1 kb
summary.rawrrChromatogram.Rd 100644 1 kb
summary.rawrrSpectrum.Rd 100644 0 kb
tic.Rd 100644 0 kb
validate_rawrrIndex.Rd 100644 1 kb
validate_rawrrSpectrum.Rd 100644 0 kb
README.md
[![JPR](https://img.shields.io/badge/JPR-10.1021%2Facs.jproteome.0c00866-brightgreen)](http://dx.doi.org/10.1021/acs.jproteome.0c00866) [![codecov](https://codecov.io/gh/fgcz/rawrr/branch/master/graph/badge.svg?token=OO4Y7G4UUX)](https://codecov.io/gh/fgcz/rawrr) [![R-CMD-check-rawrr](https://github.com/fgcz/rawrr/actions/workflows/r.yml/badge.svg)](https://github.com/fgcz/rawrr/actions/workflows/r.yml) ![rawrrHexSticker](https://github.com/fgcz/rawrr/blob/master/rawrr_logo.png) # rawrr The package provides access to proprietary Thermo Fisher Scientific Orbitrap instrument data as a stand-alone R package or serves as [MsRawFileReaderBackend](https://github.com/cpanse/MsBackendRawFileReader) for the Bioconductor [Spectra](https://bioconductor.org/packages/Spectra/) package. rawrr wraps the functionality of the [RawFileReader](https://planetorbitrap.com/rawfilereader) [.NET assembly](https://www.mono-project.com/docs/advanced/assemblies-and-the-gac/). Test files are provided by the [tartare](https://bioconductor.org/packages/tartare/) ExperimentData package. ## Install Please follow the [INSTALL](https://bioconductor.org/packages/release/bioc/install/rawrr/INSTALL) instructions provided through https://bioconductor.org/packages/rawrr/ ## Manuscript http://dx.doi.org/10.1021/acs.jproteome.0c00866 ## Talks - [rawrr - invoking managed code using ThermoFisher.CommonCore.RawFileReader;](http://fgcz-ms.uzh.ch/~cpanse/talks/20211123-rawrrRcpp_MetaRbolimics2021.html) presentaton at [3rd de.NBI / ELIXIR-DE metaRbolomics Hackathon 2021](https://www.denbi.de/news/1299-3rd-de-nbi-elixir-de-metarbolomics-hackathon) in Lutherstadt Wittenberg (22-24 November); [code snippets](https://github.com/cpanse/rawrrRcpp). - [MsRawFileReaderBackend](https://bioconductor.org/packages/MsBackendRawFileReader/) presentaton at [European Biocondutor Meeting, de Duve Institute, UCLouvain, Campus de Woluw ́e Brussels, Belgium, Dec 2019](http://fgcz-ms.uzh.ch/~cpanse/talks/rawR_EuroBioc2019_Brussels_88c9.pdf)