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roxygen2::roxygenise()

Christian Panse authored on 30/04/2021 08:09:31
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@@ -3,7 +3,7 @@
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 \name{sampleFilePath}
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 \alias{sampleFilePath}
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 \alias{sample.raw}
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-\title{{\code{sample.raw}}}
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+\title{A small file size {\code{sample.raw}} BLOB}
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 \usage{
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 sampleFilePath()
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 }
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url cosmetics

Christian Panse authored on 18/12/2020 07:07:18
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@@ -12,7 +12,7 @@ file path of the sample.raw location.
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 }
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 \description{
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 The binary example file sample.raw, shipped with the package, contains
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-574 Fourier-transformed orbitrap
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+574 Fourier-transformed Orbitrap
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 spectra (FTMS) recorded on a Thermo Fisher Scientific Q Exactive HF-X. The
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 mass spectrometer was operated in line with a nano electrospray source (NSI)
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 in positive mode (+). All spectra were written to disk after applying
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incorporate Antje's corrections

Christian Panse authored on 17/12/2020 14:23:36
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@@ -11,7 +11,8 @@ sampleFilePath()
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 file path of the sample.raw location.
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 }
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 \description{
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-The binary example file sample.raw contains 574 Fourier-transformed orbitrap
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+The binary example file sample.raw, shipped with the package, contains
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+574 Fourier-transformed orbitrap
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 spectra (FTMS) recorded on a Thermo Fisher Scientific Q Exactive HF-X. The
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 mass spectrometer was operated in line with a nano electrospray source (NSI)
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 in positive mode (+). All spectra were written to disk after applying
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@@ -36,7 +37,7 @@ sampleFilePath()
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 \item{Bioconductor
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 \href{https://bioconductor.org/packages/tartare/}{tartare} package.}
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 \item{Automated quality control sample 1 (autoQC01) analyzed across different
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-Thermo Scientific mass spectrometers,
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+Thermo Fisher Scientific mass spectrometers,
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 \href{https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000086542}{MSV000086542}.}
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 }
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 }
Christian Panse authored on 08/12/2020 09:26:13
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new file mode 100644
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+% Generated by roxygen2: do not edit by hand
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+% Please edit documentation in R/rawrr.R
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+\name{sampleFilePath}
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+\alias{sampleFilePath}
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+\alias{sample.raw}
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+\title{{\code{sample.raw}}}
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+\usage{
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+sampleFilePath()
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+}
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+\value{
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+file path of the sample.raw location.
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+}
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+\description{
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+The binary example file sample.raw contains 574 Fourier-transformed orbitrap
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+spectra (FTMS) recorded on a Thermo Fisher Scientific Q Exactive HF-X. The
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+mass spectrometer was operated in line with a nano electrospray source (NSI)
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+in positive mode (+). All spectra were written to disk after applying
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+centroiding (c) and lock mass correction.
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+}
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+\details{
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+Thermo Fisher Scientific Q Exactive HF-X raw file
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+of size 1.5M bytes and checksum
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+\code{MD5 (sample.raw) = fe67058456c79af7442316c474d20e96}.
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+Additional raw data for
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+demonstration and extended testing is available through
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+\href{https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000086542}{MSV000086542}
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+and the
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+\href{https://bioconductor.org/packages/tartare/}{tartare} package.
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+\strong{Lions love raw meat!}
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+}
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+\examples{
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+sampleFilePath()
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+}
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+\references{
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+\itemize{
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+\item{Bioconductor
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+\href{https://bioconductor.org/packages/tartare/}{tartare} package.}
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+\item{Automated quality control sample 1 (autoQC01) analyzed across different
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+Thermo Scientific mass spectrometers,
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+\href{https://massive.ucsd.edu/ProteoSAFe/dataset.jsp?accession=MSV000086542}{MSV000086542}.}
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+}
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+}
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+\author{
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+Tobias Kockmann, 2018, 2019.
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+}