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README.md
[![JPR](https://img.shields.io/badge/JPR-10.1021%2Facs.jproteome.8b00173-brightgreen)](http://dx.doi.org/10.1021/acs.jproteome.8b00173) # rawDiag ![octopussy](vignettes/octopussy.png) an R package supporting rational LC-MS method optimization for bottom-up proteomics on multiple OS platforms main features: 1. **multiplatform** and **fast** reading through using [The New RawFileReader from Thermo Fisher Scientific](http://planetorbitrap.com/rawfilereader). 2. uses latest visualization generation through using Rs [ggplot2](https://cran.r-project.org/package=ggplot2) package. 3. provides an R interface to your instrument raw data. 4. ships with an example [shiny application](http://fgcz-ms-shiny.uzh.ch:8080/bfabric_rawDiag/).