1. rScudo
  2. Graph
Graph of rScudo
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  • 714d2ef (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:09:51 -0400;
  • 929db2a (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:09:51 -0400;
  • 82d1474 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:06:35 -0400;
  • c8821c2 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:06:35 -0400;
  • b8b79c3 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:57 -0400;
  • 72303c6 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:18:57 -0400;
  • c1f126f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:52:24 +0000;
  • face4cf (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:52:24 +0000;
  • 34a33fd bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:48:31 +0000;
  • c44ecd1 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:48:31 +0000;
  • 3f7026d bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:39:52 +0000;
  • 673d670 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:39:52 +0000;
  • 4ec9e23 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:41:01 -0400;
  • c0987fd (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:41:01 -0400;
  • 0ac10fc updated tests by Matteo Ciciani <matteo.ciciani@gmail.com> 2020-05-21 04:12:16 +0200;
  • 013ab94 update citation by Matteo Ciciani <matteo.ciciani@gmail.com> 2020-05-21 03:33:57 +0200;
  • c864bcd Merge remote-tracking branch 'upstream/master' by Matteo Ciciani <matteo.ciciani@gmail.com> 2020-05-20 05:34:47 +0200;
  • 9d7c84e check unique samples by Matteo Ciciani <matteo.ciciani@gmail.com> 2020-05-20 05:28:58 +0200;
  • dbdd762 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:22:02 +0000;
  • 910d0e4 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:22:02 +0000;
  • 75bdf7a Vignette update by Matteo Ciciani <matteo.ciciani@gmail.com> 2019-12-19 23:10:19 +0100;
  • 42cd338 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:23 -0400;
  • dc9f0db (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:27 -0400;
  • 59f53b6 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:16:18 -0400;
  • a384fdc (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:14 -0400;
  • db735bd Version bump: 0.99.6 by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-12-04 12:55:28 +0100;
  • c8c2139 Version bump: 0.99.5 by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-12-04 11:19:54 +0100;
  • f5bd20f Added README skeleton by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-12-04 09:39:53 +0100;
  • 1c6691a Version bump: 0.99.4 by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-26 16:18:05 +0100;
  • 79fab1f Shortened input checks using helper functions by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-26 16:17:33 +0100;
  • 96f19f8 Document SummarizedExperiment input Simplify checks by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-26 14:47:57 +0100;
  • f07c68b Merge by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-26 11:04:19 +0100;
  • 39f2cff removed base.url from scudoCytoscape by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-26 11:01:38 +0100;
  • f77dfd2 Simplified input check, defined helper functions .isSingleLogical and .isSingleNumber by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-26 10:46:33 +0100;
  • 524ba96 .inputConverter() implemented. by cantorethomas <cantorethomas@gmail.com> 2018-11-24 21:07:28 +0100;
  • b52f2bc Added SummarizedExperiment as possible input by cantorethomas <cantorethomas@gmail.com> 2018-11-24 20:24:04 +0100;
  • e349a37 Version bump: 0.99.3 by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-22 15:14:51 +0100;
  • 734082c Update R version dependency from 3.5.0 to 3.6 by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-22 14:58:09 +0100;
  • 093792b Removed messy implementation of .checkSigValidity by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-22 14:36:32 +0100;
  • 3fe02b9 Merge branch 'master' of github.com:Matteo-Ciciani/scudo by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-22 12:07:39 +0100;
  • da168d8 Version bump: 0.99.2 by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-22 12:05:33 +0100;
  • b38e359 helper for validity check on up-down Signatures (class) by cantorethomas <cantorethomas@gmail.com> 2018-11-22 10:47:29 +0100;
  • 9089ccf Version bump: 0.99.1 by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-14 15:11:50 +0100;
  • f1c6ab6 Fix issue with ExpressionSet link under WIndows by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-14 15:08:04 +0100;
  • 87ed55d Fix link issue under Windows by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-14 14:57:55 +0100;
  • b1a17a5 Version bump by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-13 18:20:32 +0100;
  • 14dca07 Added CITATION by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-13 17:05:21 +0100;
  • 379be9e Completed vigentte by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-13 16:37:36 +0100;
  • 848ff38 Added NEWS, updated vignette by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-13 09:49:28 +0100;
  • 245bff0 Added intro to vignette by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-12 11:44:19 +0100;
  • a0c1849 Merge branch 'master' of github.com:Matteo-Ciciani/scudo by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-12 10:48:50 +0100;
  • 6ccc7a4 Documented scudoModel by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-12 11:45:51 +0100;
  • 231d672 Input Check for scudoModel by cantorethomas <cantorethomas@gmail.com> 2018-11-09 15:38:03 +0100;
  • ff77cd7 Added function scudoModel by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-09 13:40:52 +0100;
  • 8108dbe Optimize? by cantorethomas <cantorethomas@gmail.com> 2018-11-08 14:52:49 +0100;
  • 074fbe9 Merge branch 'master' of https://github.com/Matteo-Ciciani/rScudo by cantorethomas <cantorethomas@gmail.com> 2018-11-07 17:39:45 +0100;
  • bf75472 empty commit by cantorethomas <cantorethomas@gmail.com> 2018-11-07 17:39:36 +0100;
  • af11c89 Try Travis again by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-06 18:26:22 +0100;
  • e50a14d Changed Travis setup trying to solve requireNamespace error by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-06 18:11:18 +0100;
  • d189846 Fixed eval error in vignette by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-06 17:44:49 +0100;
  • a2a9e0e Added biocViews and updated vignette by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-11-06 15:57:56 +0100;
  • 7dcd264 Cross validation for nTop nBottom by cantorethomas <cantorethomas@gmail.com> 2018-11-06 11:34:04 +0100;
  • e03c363 Vignette by cantorethomas <cantorethomas@gmail.com> 2018-11-01 10:40:38 +0100;
  • 6ccba06 Update vignette by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-31 16:56:46 +0100;
  • 27988a2 Updated package description by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-29 23:11:31 +0100;
  • b651e67 Fixed error in scudoClassify: if complete = TRUE, scores are computed using the similarity matrix, not the distance matrix by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-29 22:36:41 +0100;
  • 3b01e0c Renamed params -> scudoParams to avoid overlap with S4Vectors by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-29 21:29:14 +0100;
  • af7a3b1 Added .computeCompleteScores utility and relative tests by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-29 14:31:15 +0100;
  • 82576ee Added e1071 to Suggested packages by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-26 17:19:01 +0200;
  • 4dcd51a Setup Travis-CI by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-26 16:13:56 +0200;
  • 530e5bb Solved bioC warning about namespace consistency by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-26 15:50:54 +0200;
  • 06df43f Solved issues with scudoPLot and scudoClassify by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-26 15:08:05 +0200;
  • 74a6eda Solved issue in vignette index entry by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-25 12:32:34 +0200;
  • 082bd13 Written package Rd entry by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-25 12:24:13 +0200;
  • 5e35db4 Added skeleton of package Rd file by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-25 12:14:52 +0200;
  • 1ffaeb0 Updated vignette by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-23 19:17:42 +0200;
  • d97e700 Renamed package rScudo by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-23 12:02:40 +0200;
  • 28a1061 Renamed scudoResults -> ScudoResults by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-22 16:38:51 +0200;
  • 0a654aa Merge branch 'master' of github.com:Matteo-Ciciani/scudo by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-19 12:38:45 +0200;
  • 86eea25 Updated show and vignette by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-19 12:38:38 +0200;
  • ff32177 Doc by cantorethomas <cantorethomas@gmail.com> 2018-10-17 11:17:50 +0200;
  • ec5ec6d Improved class doc by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-17 10:36:57 +0200;
  • d46f0b2 Solved bad line in scudoNetwork doc by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-16 11:34:22 +0200;
  • bf502ff Added Thomas as autor in doc by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-16 09:35:15 +0200;
  • dbd6f10 Update doc of scudoClassify by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-16 09:31:56 +0200;
  • d3b3e1f Completed documentation of scudoClassify by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-15 18:57:59 +0200;
  • 1e0d3f4 Fixed issue with bfs in .visitEdges by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-15 18:44:22 +0200;
  • 9ccaf85 Fixed issues with bad lines in doc by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-15 14:48:14 +0200;
  • 7d90e36 Update doc of scudoTest by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-15 14:13:09 +0200;
  • a4e4c5f Add logTransformed parameter and update domumentation by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-15 10:43:42 +0200;
  • e26aa56 Renamed file scudo.R to scudoTrain.R by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-14 17:59:56 +0200;
  • 1b37c74 Renamed scudo -> scudoTrain by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-14 17:56:30 +0200;
  • d4f6201 Renamed normalization by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-14 17:30:14 +0200;
  • a0af948 Modified normalization by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-14 17:10:22 +0200;
  • d024433 Merge branch 'master' of github.com:Matteo-Ciciani/scudo by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-14 14:11:54 +0200;
  • 8e1f7cd Merge branch 'master' of https://github.com/Matteo-Ciciani/scudo by cantorethomas <cantorethomas@gmail.com> 2018-10-12 16:31:29 +0200;
  • 4786998 Normalization fixed for log transformed by cantorethomas <cantorethomas@gmail.com> 2018-10-12 16:23:20 +0200;
  • e3d7d71 Modified documentation to make biocCheck complain less by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-12 13:08:06 +0200;
  • 8cc956d Reordered utilities by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-12 12:20:48 +0200;
  • 50bf45b Replaced normalization with fold-chnage in documentation by Matteo Ciciani <matteo.ciciani@gmail.com> 2018-10-12 12:04:53 +0200;