1. r3Cseq
  2. Graph
Graph of r3Cseq
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  • d9b6929 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:26 -0400;
  • d9ef32a (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:48:26 -0400;
  • b249bbb bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:25 -0400;
  • 8f392a0 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:21:25 -0400;
  • c39e8b0 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:25 -0400;
  • d21d569 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:25 -0400;
  • ff62ef0 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:26 +0000;
  • c9c2f38 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:09:26 +0000;
  • ad5aeec bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:54 +0000;
  • 4ade9b7 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:00:54 +0000;
  • 805ee68 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:26 +0000;
  • f159c04 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:50:26 +0000;
  • 0970b59 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:30 -0400;
  • 5903521 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:43:30 -0400;
  • ace99c4 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:26 +0000;
  • ab02c37 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:27:26 +0000;
  • f4e5b4d bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:35:57 -0400;
  • 7a896ef (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:23 -0400;
  • 224c8f0 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:07 -0400;
  • dff8c27 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:32 -0400;
  • e4ca6f0 update the version to 1.29.1 by supat thongjuea <supat.thongjuea@gmail.com> 2018-12-20 10:21:23 +0000;
  • 2697bb9 update the package's description by supat thongjuea <supat.thongjuea@gmail.com> 2018-12-14 22:17:09 +0000;
  • a51b995 update the reference by supat thongjuea <supat.thongjuea@gmail.com> 2018-12-14 22:09:42 +0000;
  • 3f1cd43 vignettes/r3Cseq.Rmd by supat thongjuea <supat.thongjuea@gmail.com> 2018-12-14 22:08:19 +0000;
  • cdb2f87 - migrated all codes to support the BioC3.9! This is because the BioC3.9 will not anymore support the 'RangedData' which is mainly used by r3Cseq in the previous versions. by supat thongjuea <supat.thongjuea@gmail.com> 2018-12-14 21:58:23 +0000;
  • 5d186e8 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
  • 321df82 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:48 -0400;
  • d95db9d bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 4e2fbaa (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:22 -0400;
  • 503622c bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:13 -0400;
  • 6fd4d84 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:36 -0400;
  • 4e5dd75 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • 57124e4 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • 22877a4 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 64dafd9 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • d10c6f5 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • de7cbad bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • d501e26 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • a24a0a9 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 796e3e9 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 68503f4 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • eeb7da9 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • 53c2bd5 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • 8ef3f8a Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • 997e294 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 97383b7 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • 13ede60 fixed the bugs in function "export3Cseq2bedGraph" by Supat Thongjuea <unknown> 2015-02-22 15:59:51 +0000;
  • 14f8388 - Fixed the bug in the function "getViewpoint" - Modified the Description and NEWS - added mm10reGene.rd and rn5refGene.rd by Supat Thongjuea <unknown> 2015-02-03 13:47:23 +0000;
  • d8ca183 - added mm10 and rn5 genomes - fixed the error of export3CseqRawReads2bedGraph by Supat Thongjuea <unknown> 2015-01-26 15:34:26 +0000;
  • ac2b9e0 (origin/RELEASE_3_0, RELEASE_3_0) port -c97462 by Martin Morgan <mtmorgan@fhcrc.org> 2014-12-07 23:30:30 +0000;
  • 26c9063 code clean up by Martin Morgan <mtmorgan@fhcrc.org> 2014-12-07 23:25:24 +0000;
  • 8fc058c avoid creating data.frame with duplicate columns by Martin Morgan <mtmorgan@fhcrc.org> 2014-12-07 23:23:35 +0000;
  • 92f3b51 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:47:41 +0000;
  • 5936635 Creating branch for BioC 3.0 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:46:02 +0000;
  • e1a842e Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-10-13 21:38:33 +0000;
  • 222e182 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:21:21 +0000;
  • 5cc79e1 (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:17:46 +0000;
  • 8882fce First version bump prior to creating 2.14 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2014-04-11 21:07:21 +0000;
  • b575261 Modify biocViews to remove duplicate biocViews by Sonali Arora <sarora@fhcrc.org> 2014-03-05 00:04:56 +0000;
  • e2a1edc modify to new biocViews to DESCRIPTION file by Sonali Arora <sarora@fhcrc.org> 2014-03-04 22:12:21 +0000;
  • 985d812 Make sure the *masked* mm9, hg18, and hg19 genomes are used in every place. by Herve Pages <hpages@fhcrc.org> 2014-02-20 08:53:08 +0000;
  • 86e63b2 Need to use *masked* BSgenome data packages for mm9, hg18, and hg19, so matchPattern(..., fixed=FALSE) skips the assembly gaps. This avoids the "The position of your input primers are not unique" error that was caused by the removal of the masks in version 1.3.99 of BSgenome.Mmusculus.UCSC.mm9, BSgenome.Hsapiens.UCSC.hg18, and BSgenome.Hsapiens.UCSC.hg19. by Herve Pages <hpages@fhcrc.org> 2014-02-20 07:53:36 +0000;
  • 0d0e242 Fix the bugs in function getFragmentsPerWindow by Supat Thongjuea <unknown> 2013-11-11 15:02:04 +0000;
  • a9b0cac Changed ints/doc to vignettes and change the version to 1.9.1 by Supat Thongjuea <unknown> 2013-10-31 13:24:44 +0000;
  • e5fef19 Update the description of the author by Supat Thongjuea <unknown> 2013-10-22 10:27:29 +0000;
  • f155939 Fixed bugs and added parameters for the plot functions (see news) by Supat Thongjuea <unknown> 2013-10-22 10:21:17 +0000;
  • 33c2e34 bump version after release branch has been created by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:47:19 +0000;
  • d8f5e7a (origin/RELEASE_2_13, RELEASE_2_13) Creating branch for BioC 2.13 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:43:43 +0000;
  • 76a7420 bump versions prior to creating BioC 2.13 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-10-14 21:29:21 +0000;
  • 4b290f5 Bump y in version x.y.z to odd number in devel by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 22:06:11 +0000;
  • 8398342 (origin/RELEASE_2_12, RELEASE_2_12) Creating branch for BioC 2.12 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:56:22 +0000;
  • ea581b5 bump y of x.y.z version number for BioC 2.12 release by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-04-03 21:32:27 +0000;
  • 11d3f21 The the warnings for unstated dependencies in R code by Supat Thongjuea <unknown> 2013-03-23 07:32:02 +0000;
  • 5850ced Fix the WARNINGS by Supat Thongjuea <unknown> 2013-03-23 07:26:00 +0000;
  • 37a56be We have changed the formula for cis and trans interaction detection. by Supat Thongjuea <unknown> 2013-02-17 23:36:56 +0000;
  • e3ac605 version bump..... by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-02-13 23:08:26 +0000;
  • c7e45a8 fix trailing comma by Dan Tenenbaum <dtenenba@fhcrc.org> 2013-02-13 23:07:12 +0000;
  • 7f402d3 Delete getViewpoint.Rd.svntmp and plot3Cecdf.Rd.svntmp files. by Supat Thongjuea <unknown> 2012-12-10 12:16:58 +0000;
  • d059853 This is r3Cseq version 1.5.0. This updated version provides more functionality to facilitate the analysis of 3C-seq data. For more details see the NEWS file. by Supat Thongjuea <unknown> 2012-12-10 11:42:24 +0000;
  • 64a0624 bump package versions after creating 2.11 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:43:56 +0000;
  • 0811e48 (origin/RELEASE_2_11, RELEASE_2_11) Creating branch for BioC 2.11 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:37:11 +0000;
  • 1c35a7d Bump all packages before creating 2.11 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-10-01 22:16:24 +0000;
  • 92a6ade per maintainer's request, replaced package with BioC 2.10 version, bumpped version to 1.3.1 by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-09-20 20:50:06 +0000;
  • a8705e8 preparing to replace package by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-09-20 20:47:07 +0000;
  • f2cbbe8 add Test.R to Collate field, bump version by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-09-19 18:43:27 +0000;
  • 08865aa Adding the class "r3CseqWithReplicates" for working on the r3Cseq data with have replicates by Supat Thongjuea <unknown> 2012-09-18 11:45:30 +0000;
  • e7a42ae bumped version numbers after creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:15:56 +0000;
  • 3f6fd6d (origin/RELEASE_2_10, RELEASE_2_10) Creating branch for BioC 2.10 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:10:45 +0000;
  • 247bd36 first version bump prior to creating 2.10 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2012-03-30 22:05:02 +0000;
  • 9c1e8dc version bump for start of 2.10 development cycle by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:12:28 +0000;
  • 6c3e3d0 (origin/RELEASE_2_9, RELEASE_2_9) Creating branch for BioC 2.9 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 23:05:58 +0000;
  • 574f489 bumped package version numbers prior to creating 2.9 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2011-10-31 22:59:03 +0000;
  • 6480b74 remove unwanted .Rhistory files by Martin Morgan <mtmorgan@fhcrc.org> 2011-10-21 13:27:42 +0000;
  • 6483657 Adds r3Cseq to the repos. by Marc Carlson <mcarlson@fhcrc.org> 2011-10-19 16:32:03 +0000;