Package: r3Cseq
Version: 1.49.0
Title: Analysis of Chromosome Conformation Capture and Next-generation
        Sequencing (3C-seq)
Author: Supat Thongjuea, MRC WIMM Centre for Computational Biology, Weatherall
        Institute of Molecular Medicine, University of Oxford, UK
Maintainer: Supat Thongjuea <> or <>
Depends: GenomicRanges, Rsamtools, rtracklayer, VGAM, qvalue
Imports: methods, GenomeInfoDb, IRanges, Biostrings, data.table,
	sqldf, RColorBrewer
Suggests: BSgenome.Mmusculus.UCSC.mm9.masked, BSgenome.Mmusculus.UCSC.mm10.masked, BSgenome.Hsapiens.UCSC.hg18.masked,
	BSgenome.Hsapiens.UCSC.hg19.masked, BSgenome.Rnorvegicus.UCSC.rn5.masked
Description: This package is used for the analysis of long-range chromatin interactions from 3C-seq assay.
License: GPL-3
Collate: AllClasses.R AllGenerics.R Export.R FunctionInCommon.R
        FunctionsForBatchAnalysis.R RestrictionEnzymeFunctions.R
        FunctionsForNoReplicationAnalysis.R Report.R Visualize3Cseq.R
biocViews: Preprocessing, Sequencing