Package: primirTSS
Title: Prediction of pri-miRNA Transcription Start Site 
Version: 1.21.0
Author: Pumin Li [aut, cre], Qi Xu [aut], Jie Li [aut], Jin Wang [aut]
Maintainer: Pumin Li <ipumin@163.com>
Description: A fast, convenient tool to identify the TSSs of miRNAs by 
    integrating the data of H3K4me3 and Pol II as well as combining the 
    conservation level and sequence feature, provided within both command-line 
    and graphical interfaces, which achieves a better performance than the 
    previous non-cell-specific methods on miRNA TSSs.
License: GPL-2
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
Depends: R (>= 3.5.0)
Imports:
    GenomicRanges (>= 1.32.2),
    S4Vectors (>= 0.18.2),
    rtracklayer (>= 1.40.3),
    dplyr (>= 0.7.6),
    stringr (>= 1.3.1),
    tidyr (>= 0.8.1),
    Biostrings (>= 2.48.0),
    purrr (>= 0.2.5),
    BSgenome.Hsapiens.UCSC.hg38 (>= 1.4.1),
    phastCons100way.UCSC.hg38 (>= 3.7.1),
    GenomicScores (>= 1.4.1),
    shiny (>= 1.0.5),
    Gviz (>= 1.24.0),
    BiocGenerics (>= 0.26.0),
    IRanges (>= 2.14.10),
    TFBSTools (>= 1.18.0),
    JASPAR2018 (>= 1.1.1),
    tibble (>= 1.4.2),
    R.utils (>= 2.6.0),
    stats,
    utils
Suggests: knitr,
    rmarkdown
VignetteBuilder: knitr
biocViews: ImmunoOncology, Sequencing, RNASeq, Genetics, Preprocessing, Transcription, GeneRegulation
URL: https://github.com/ipumin/primirTSS
BugReports: http://github.com/ipumin/primirTSS/issues