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Bump version to trigger rebuild and propagation of new Mac binary

Fix the dynamic links to libgfortran.5.dylib and libquadmath.0.dylib

J Wokaty authored on 02/05/2023 13:47:52
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                                      Package: preprocessCore
                                     -Version: 1.63.0
                                     +Version: 1.63.1
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y following creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 13:38:39
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                                      Package: preprocessCore
                                     -Version: 1.62.0
                                     +Version: 1.63.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 13:38:39
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                                      Package: preprocessCore
                                     -Version: 1.61.0
                                     +Version: 1.62.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 14:35:18
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                                      Package: preprocessCore
                                     -Version: 1.60.0
                                     +Version: 1.61.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 14:35:18
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                                      Package: preprocessCore
                                     -Version: 1.59.0
                                     +Version: 1.60.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 14:54:40
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                                      Package: preprocessCore
                                     -Version: 1.58.0
                                     +Version: 1.59.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 14:54:40
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                                      Package: preprocessCore
                                     -Version: 1.57.1
                                     +Version: 1.58.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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define DOUBLE_EPS to handle removal of that macro from R_ext/Constants.h

Ben Bolstad authored on 05/04/2022 21:37:44
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                                      Package: preprocessCore
                                     -Version: 1.57.0
                                     +Version: 1.57.1
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 15:45:45
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                                      Package: preprocessCore
                                     -Version: 1.56.0
                                     +Version: 1.57.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 15:45:45
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                                      Package: preprocessCore
                                     -Version: 1.55.2
                                     +Version: 1.56.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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Version number bump

Ben Bolstad authored on 02/07/2021 17:25:58
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                                      Package: preprocessCore
                                     -Version: 1.55.1
                                     +Version: 1.55.2
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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documentation fix for new keep.names option and version update

Ben Bolstad authored on 29/06/2021 23:25:17
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                                      Package: preprocessCore
                                     -Version: 1.55.0
                                     +Version: 1.55.1
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:32:55
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                                      Package: preprocessCore
                                     -Version: 1.54.0
                                     +Version: 1.55.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 15:32:55
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                                      Package: preprocessCore
                                     -Version: 1.53.2
                                     +Version: 1.54.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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Disable threading when flexiblas is found

Ben Bolstad authored on 25/02/2021 00:52:20
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                                      Package: preprocessCore
                                     -Version: 1.53.1
                                     +Version: 1.53.2
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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disable use of __pthread_get_minstack which is non public symbol (this may be a temporary fix)

Ben Bolstad authored on 24/11/2020 16:02:23
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                                      Package: preprocessCore
                                     -Version: 1.53.0
                                     +Version: 1.53.1
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:22:07
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                                      Package: preprocessCore
                                     -Version: 1.52.0
                                     +Version: 1.53.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 14:22:07
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                                      Package: preprocessCore
                                     -Version: 1.51.0
                                     +Version: 1.52.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:08:06
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                                      Package: preprocessCore
                                     -Version: 1.50.0
                                     +Version: 1.51.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 18:08:06
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                                      Package: preprocessCore
                                     -Version: 1.49.2
                                     +Version: 1.50.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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Bump version number

Ben Bolstad authored on 01/02/2020 18:10:55
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                                      Package: preprocessCore
                                     -Version: 1.49.1
                                     +Version: 1.49.2
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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Updated version number

Ben Bolstad authored on 01/02/2020 17:47:23
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                                      Package: preprocessCore
                                     -Version: 1.49.0
                                     +Version: 1.49.1
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to odd y after creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:34:30
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                                      Package: preprocessCore
                                     -Version: 1.48.0
                                     +Version: 1.49.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:07:22
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                                      Package: preprocessCore
                                     -Version: 1.47.1
                                     +Version: 1.48.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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(1.47.1) Configure script checks to see if R is using openblas. If it is then it disables the internal preprocessCore threading code.

Ben Bolstad authored on 12/05/2019 15:32:40
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                                      Package: preprocessCore
                                     -Version: 1.47.0
                                     +Version: 1.47.1
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 16:10:29
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                                      Package: preprocessCore
                                     -Version: 1.46.0
                                     +Version: 1.47.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 15:53:01
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                                      Package: preprocessCore
                                     -Version: 1.45.0
                                     +Version: 1.46.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to odd y after creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:54:26
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                                      Package: preprocessCore
                                     -Version: 1.44.0
                                     +Version: 1.45.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:41:40
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                                      Package: preprocessCore
                                     -Version: 1.43.0
                                     +Version: 1.44.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:41:36
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                                      Package: preprocessCore
                                     -Version: 1.42.0
                                     +Version: 1.43.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:34:55
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                                      Package: preprocessCore
                                     -Version: 1.41.0
                                     +Version: 1.42.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to odd y after creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:52:04
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                                      Package: preprocessCore
                                     -Version: 1.40.0
                                     +Version: 1.41.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:38:20
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                                      Package: preprocessCore
                                     -Version: 1.39.3
                                     +Version: 1.40.0
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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fix various R CMD check warnings

Ben Bolstad authored on 04/09/2017 16:33:49
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                                      Package: preprocessCore
                                     -Version: 1.39.2
                                     +Version: 1.39.3
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>
                                      Imports: stats
                                     -Description: A library of core preprocessing routines
                                     +Description: A library of core preprocessing routines.
                                      License: LGPL (>= 2)
                                      URL: https://github.com/bmbolstad/preprocessCore
                                      Collate:  normalize.quantiles.R quantile_extensions.R rma.background.correct.R rcModel.R colSummarize.R subColSummarize.R plmr.R plmd.R

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small configure script message cleanup

Ben Bolstad authored on 02/09/2017 16:48:33
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                                      Package: preprocessCore
                                     -Version: 1.39.1
                                     +Version: 1.39.2
                                      Title: A collection of pre-processing functions
                                      Author: Ben Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Ben Bolstad <bmb@bmbolstad.com>

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Standardize Author name

Ben Bolstad authored on 02/09/2017 03:44:58
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                                      Package: preprocessCore
                                      Version: 1.39.1
                                      Title: A collection of pre-processing functions
                                     -Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                     -Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                     +Author: Ben Bolstad <bmb@bmbolstad.com>
                                     +Maintainer: Ben Bolstad <bmb@bmbolstad.com>
                                      Imports: stats
                                      Description: A library of core preprocessing routines
                                      License: LGPL (>= 2)

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Bump version number up

(1.31.1) Updated configure script

Ben Bolstad authored on 02/09/2017 03:43:33
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                                      Package: preprocessCore
                                     -Version: 1.39.0
                                     +Version: 1.39.1
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to odd y after creation of 3_5 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@129129 bc3139a8-67e5-0310-9ffc-ced21a209358

hpages@fhcrc.org authored on 24/04/2017 19:50:57
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                                      Package: preprocessCore
                                     -Version: 1.38.0
                                     +Version: 1.39.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to even y prior to creation of 3_5 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@129126 bc3139a8-67e5-0310-9ffc-ced21a209358

hpages@fhcrc.org authored on 24/04/2017 19:25:24
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                                      Package: preprocessCore
                                     -Version: 1.37.0
                                     +Version: 1.38.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to odd 'y' after creation of 3_4 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@122712 bc3139a8-67e5-0310-9ffc-ced21a209358

hpages@fhcrc.org authored on 17/10/2016 19:10:43
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                                      Package: preprocessCore
                                     -Version: 1.36.0
                                     +Version: 1.37.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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bump x.y.z versions to even 'y' prior to creation of 3_4 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@122710 bc3139a8-67e5-0310-9ffc-ced21a209358

hpages@fhcrc.org authored on 17/10/2016 18:45:06
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                                      Package: preprocessCore
                                     -Version: 1.35.0
                                     +Version: 1.36.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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bump version after creating 3.3 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@117081 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 03/05/2016 21:30:44
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                                      Package: preprocessCore
                                     -Version: 1.34.0
                                     +Version: 1.35.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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Bump versions prior to creation of 3.3 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@117079 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 03/05/2016 21:20:18
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                                      Package: preprocessCore
                                     -Version: 1.33.0
                                     +Version: 1.34.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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add URL

From: Ben Bolstad <bmb@bmbolstad.com>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@113072 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 29/01/2016 15:47:08
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@@ -6,6 +6,7 @@ Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Imports: stats
                                      Description: A library of core preprocessing routines
                                      License: LGPL (>= 2)
                                     +URL: https://github.com/bmbolstad/preprocessCore
                                      Collate:  normalize.quantiles.R quantile_extensions.R rma.background.correct.R rcModel.R colSummarize.R subColSummarize.R plmr.R plmd.R
                                      LazyLoad: yes
                                      biocViews: Infrastructure

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Bumped version number of all packages after creation of 3.2 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@109592 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 13/10/2015 19:59:53
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                                      Package: preprocessCore
                                     -Version: 1.32.0
                                     +Version: 1.33.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped versions of all packages prior to creating 3.2 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@109589 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 13/10/2015 19:36:05
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                                      Package: preprocessCore
                                     -Version: 1.31.0
                                     +Version: 1.32.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bump versions in trunk after creation of 3.1 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@102594 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 16/04/2015 20:02:44
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                                      Package: preprocessCore
                                     -Version: 1.30.0
                                     +Version: 1.31.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bump versions prior to creating 3.1 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@102591 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 16/04/2015 19:42:01
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                                      Package: preprocessCore
                                     -Version: 1.29.0
                                     +Version: 1.30.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumping versions after creating 3.0 release branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@95443 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 13/10/2014 21:47:41
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                                      Package: preprocessCore
                                     -Version: 1.28.0
                                     +Version: 1.29.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bump package versions prior to creating the 3.0 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@95439 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 13/10/2014 21:38:33
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                                      Package: preprocessCore
                                     -Version: 1.27.9
                                     +Version: 1.28.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit.

Commit information:

Commit id: 340895e9278ddab0693e734a9ed34a65e34d1196

Properly register some additional .Call() functions

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-08 18:20:24 -0700
Author date: 2014-09-08 18:20:24 -0700

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@93929 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 09/09/2014 01:21:13
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                                      Package: preprocessCore
                                     -Version: 1.27.8
                                     +Version: 1.27.9
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit.

Commit information:

Commit id: 54b187b0e1ac6cd005ca4db2eac1cfc736ca07a0

fixMakevars issue for windows

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-07 09:46:41 -0700
Author date: 2014-09-07 09:46:41 -0700

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@93898 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 07/09/2014 16:47:48
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                                      Package: preprocessCore
                                     -Version: 1.27.7
                                     +Version: 1.27.8
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 3 commits.

Commit information:

Commit id: 285a731a280125b1ac46a811da37189b02ae629f

fix missing seealso in Rd files

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-05 19:17:51 -0700
Author date: 2014-09-05 19:17:51 -0700

Commit id: 193c6f8f1cc678d8e2c89260bc49af23d5d2f6b9

Remove Depends: methods (not needed)

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-05 19:01:16 -0700
Author date: 2014-09-05 19:01:16 -0700

Commit id: 046edd2b6a073a4546ef574657194ff644dd2b93

fix various c compiler warnings

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-05 18:58:17 -0700
Author date: 2014-09-05 18:58:17 -0700

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@93882 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 06/09/2014 02:18:32
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                                      Package: preprocessCore
                                     -Version: 1.27.4
                                     +Version: 1.27.7
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                     -Depends: methods
                                      Imports: stats
                                      Description: A library of core preprocessing routines
                                      License: LGPL (>= 2)

Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit.

Commit information:

Commit id: 7ba54494c889478fd85072a3eb478fb1dc54f6a4

fix some warnings on R CMD check

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-05 18:44:12 -0700
Author date: 2014-09-05 18:44:12 -0700

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@93881 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 06/09/2014 01:44:57
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                                      Package: preprocessCore
                                     -Version: 1.27.3
                                     +Version: 1.27.4
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit.

Commit information:

Commit id: dc6a4fb0d2f235494ba7c90fce88f63c80dd496a

fiz an issue with log_average.

Shows up in affyPLM. this manifests as a breakage on some platforms, and on others it resulted in extremely long runtimes

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-04 20:14:53 -0700
Author date: 2014-09-04 20:14:53 -0700

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@93843 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 05/09/2014 03:16:32
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                                      Package: preprocessCore
                                     -Version: 1.27.2
                                     +Version: 1.27.3
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Commit made by the Bioconductor Git-SVN bridge. Consists of 3 commits.

Commit information:

Commit id: cdc1110d5ba0195ad1c817dac88ee20ed65fd06d

update version number to reflect that a number of changes have occured in the C level API. Mostly only affyPLM uses this API.

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-03 19:15:52 -0700
Author date: 2014-09-03 19:15:52 -0700

Commit id: 4ce27cd0581d5340757258539cfc33552595254e

change kernel density estimation function interface

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-03 19:15:20 -0700
Author date: 2014-09-03 19:15:20 -0700

Commit id: 6fcb1768abd96e097c8ebe60177d4896c304b2e7

Documentation updates and cleanup

Committed by: Ben Bolstad
Author Name: Ben Bolstad
Commit date: 2014-09-01 18:50:59 -0700
Author date: 2014-09-01 18:50:59 -0700

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@93789 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 04/09/2014 02:17:14
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                                      Package: preprocessCore
                                     -Version: 1.27.1
                                     +Version: 1.27.2
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.27.1) Change tolerance on sum row.effects test

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@92139 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 03/07/2014 14:06:55
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                                      Package: preprocessCore
                                     -Version: 1.27.0
                                     +Version: 1.27.1
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Second version bump after creating 2.14 release branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@88840 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 11/04/2014 21:21:21
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                                      Package: preprocessCore
                                     -Version: 1.26.0
                                     +Version: 1.27.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

First version bump prior to creating 2.14 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@88838 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 11/04/2014 21:07:21
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                                      Package: preprocessCore
                                     -Version: 1.25.5
                                     +Version: 1.26.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.25.5) Fix issue with normalize.quantiles.use.target when there are NA in matrix for non-pthread builds (notably windows)

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@86028 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 04/02/2014 04:34:08
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                                      Package: preprocessCore
                                     -Version: 1.25.4
                                     +Version: 1.25.5
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

add some tests to detect potential differences in quantile normalization results across platforms

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@85741 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 23/01/2014 15:25:56
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                                      Package: preprocessCore
                                     -Version: 1.25.3
                                     +Version: 1.25.4
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.25.3) Fix compilation issue for windows build

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@83562 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 23/11/2013 03:24:12
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                                      Package: preprocessCore
                                     -Version: 1.25.2
                                     +Version: 1.25.3
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.25.2) - Additional fixes to c level interface for pre-processing routines

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@83483 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 21/11/2013 03:19:25
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                                      Package: preprocessCore
                                     -Version: 1.25.1
                                     +Version: 1.25.2
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.25.1) Refactoring of c-level interfaces for RMA background, quantile normalization and median polish implementations

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@83401 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 19/11/2013 06:38:22
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                                      Package: preprocessCore
                                     -Version: 1.25.0
                                     +Version: 1.25.1
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

bump version after release branch has been created

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@81644 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 14/10/2013 21:47:19
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                                      Package: preprocessCore
                                     -Version: 1.24.0
                                     +Version: 1.25.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

bump versions prior to creating BioC 2.13 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@81642 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 14/10/2013 21:29:21
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                                      Package: preprocessCore
                                     -Version: 1.23.0
                                     +Version: 1.24.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bump y in version x.y.z to odd number in devel

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@75270 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 03/04/2013 22:06:11
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                                      Package: preprocessCore
                                     -Version: 1.22.0
                                     +Version: 1.23.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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bump y of x.y.z version number for BioC 2.12 release

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@75263 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 03/04/2013 21:32:27
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                                      Package: preprocessCore
                                     -Version: 1.21.1
                                     +Version: 1.22.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

remove dependence on RConverters.h

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@72257 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 03/01/2013 07:10:19
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                                      Package: preprocessCore
                                     -Version: 1.21.0
                                     +Version: 1.21.1
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

bump package versions after creating 2.11 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@70052 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 01/10/2012 22:43:56
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                                      Package: preprocessCore
                                     -Version: 1.20.0
                                     +Version: 1.21.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bump all packages before creating 2.11 branch.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@70050 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 01/10/2012 22:16:24
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                                      Package: preprocessCore
                                     -Version: 1.19.0
                                     +Version: 1.20.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

bumped version numbers after creating 2.10 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@64680 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 30/03/2012 22:15:56
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                                      Package: preprocessCore
                                     -Version: 1.18.0
                                     +Version: 1.19.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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first version bump prior to creating 2.10 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@64678 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 30/03/2012 22:05:02
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                                      Package: preprocessCore
                                     -Version: 1.17.7
                                     +Version: 1.18.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.17.7) small change in density estimation c code

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@64007 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 16/03/2012 03:19:07
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                                      Package: preprocessCore
                                     -Version: 1.17.6
                                     +Version: 1.17.7
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.7.6) Fix issues with non- pthreads builds for subrcModel*

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@63795 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 13/03/2012 04:36:51
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                                      Package: preprocessCore
                                     -Version: 1.17.5
                                     +Version: 1.17.6
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.17.5) fix some pthreads issues in subrcModelPLM

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@63684 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 09/03/2012 15:54:19
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                                      Package: preprocessCore
                                     -Version: 1.17.4
                                     +Version: 1.17.5
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.17.4) Fix some issues with non re-entrant functions

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@63621 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 08/03/2012 19:17:58
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                                      Package: preprocessCore
                                     -Version: 1.17.3
                                     +Version: 1.17.4
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.17.3) More implementation of subrcColModel routines

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@63619 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 08/03/2012 17:22:34
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                                      Package: preprocessCore
                                     -Version: 1.17.2
                                     +Version: 1.17.3
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.17.2) Beginning of extra rcModel functionality

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@63611 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 08/03/2012 04:59:36
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                                      Package: preprocessCore
                                     -Version: 1.17.1
                                     +Version: 1.17.2
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.17.1) made the KernelDensity C code interface available

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@60064 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 04/11/2011 03:02:03
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                                      Package: preprocessCore
                                     -Version: 1.17.0
                                     +Version: 1.17.1
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

version bump for start of 2.10 development cycle

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@59924 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 31/10/2011 23:12:28
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                                      Package: preprocessCore
                                     -Version: 1.16.0
                                     +Version: 1.17.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

bumped package version numbers prior to creating 2.9 branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@59920 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 31/10/2011 22:59:03
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                                      Package: preprocessCore
                                     -Version: 1.15.0
                                     +Version: 1.16.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped version numbers again for new BioC 2.9 devel cycle.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@54802 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 13/04/2011 22:36:43
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                                      Package: preprocessCore
                                     -Version: 1.14.0
                                     +Version: 1.15.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped version numbers for BioC 2.8 release.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@54800 bc3139a8-67e5-0310-9ffc-ced21a209358

d.tenenbaum authored on 13/04/2011 22:27:35
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                                      Package: preprocessCore
                                     -Version: 1.13.6
                                     +Version: 1.14.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Added preprocessCore_*_stubs.h

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@54042 bc3139a8-67e5-0310-9ffc-ced21a209358

bcarvalh@jhsph.edu authored on 25/03/2011 14:42:31
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                                      Package: preprocessCore
                                     -Version: 1.13.5
                                     +Version: 1.13.6
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>
@@ -10,4 +10,3 @@ License: LGPL (>= 2)
                                      Collate:  normalize.quantiles.R quantile_extensions.R rma.background.correct.R rcModel.R colSummarize.R subColSummarize.R plmr.R plmd.R
                                      LazyLoad: yes
                                      biocViews: Infrastructure
+                                    -

Browse code

Adding rlm_compute_se_R() at the C-level

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@51995 bc3139a8-67e5-0310-9ffc-ced21a209358

bcarvalh@jhsph.edu authored on 20/01/2011 18:45:34
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                                      Package: preprocessCore
                                     -Version: 1.13.4
                                     +Version: 1.13.5
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.13.4) fix issues with normalize.quantiles.use.target when subset argument supplied and when target distribution length != nrow(x)

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@51771 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 06/01/2011 03:43:01
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                                      Package: preprocessCore
                                     -Version: 1.13.3
                                     +Version: 1.13.4
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.13.3) Some changes to how PTHREAD_STACK_MIN is handled

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@51176 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 02/12/2010 01:55:07
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                                      Package: preprocessCore
                                     -Version: 1.13.2
                                     +Version: 1.13.3
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.13.2) Minor modification to log2 usage

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@51158 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 01/12/2010 04:10:43
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                                      Package: preprocessCore
                                     -Version: 1.13.1
                                     +Version: 1.13.2
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.13.1) reorder library dependencies

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@50841 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 12/11/2010 14:46:27
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                                      Package: preprocessCore
                                     -Version: 1.13.0
                                     +Version: 1.13.1
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped version numbers again for new BioC 2.8 devel cycle. ERRATA: Previous bump was for BioC 2.7 release (of course), not 2.6!

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@50295 bc3139a8-67e5-0310-9ffc-ced21a209358

hpages@fhcrc.org authored on 18/10/2010 05:57:44
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.12.0
                                     +Version: 1.13.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped version numbers for BioC 2.6 release

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@50293 bc3139a8-67e5-0310-9ffc-ced21a209358

hpages@fhcrc.org authored on 18/10/2010 05:34:23
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                                      Package: preprocessCore
                                     -Version: 1.11.0
                                     +Version: 1.12.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Removed unneeded .First.lib function.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@46456 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 23/04/2010 07:25:40
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@@ -4,9 +4,10 @@ Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Depends: methods
                                     +Imports: stats
                                      Description: A library of core preprocessing routines
                                      License: LGPL (>= 2)
                                     -Collate:  normalize.quantiles.R quantile_extensions.R rma.background.correct.R rcModel.R colSummarize.R subColSummarize.R plmr.R plmd.R init.R
                                     +Collate:  normalize.quantiles.R quantile_extensions.R rma.background.correct.R rcModel.R colSummarize.R subColSummarize.R plmr.R plmd.R
                                      LazyLoad: yes
                                      biocViews: Infrastructure

Browse code

Bumped version numbers for BioC 2.7 trunk

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@46405 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 22/04/2010 18:45:15
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                                      Package: preprocessCore
                                     -Version: 1.10.0
                                     +Version: 1.11.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped version numbers for BioC 2.6 release

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@46401 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 22/04/2010 18:21:23
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                                      Package: preprocessCore
                                     -Version: 1.9.0
                                     +Version: 1.10.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Package version bump for BioC 2.6 devel.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@42686 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 27/10/2009 23:45:24
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.8.0
                                     +Version: 1.9.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Package version bump for BioC 2.5 release.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@42684 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 27/10/2009 23:33:29
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.7.9
                                     +Version: 1.8.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.7.9) Additional #include for pthreads builds

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@41615 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 10/09/2009 17:44:14
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.7.8
                                     +Version: 1.7.9
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.7.8) Attempt to check if PTHREAD_STACK_MIN is defined

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@41610 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 10/09/2009 03:36:32
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.7.7
                                     +Version: 1.7.8
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.7.7) Include <limits.h> on pthreads builds

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@41586 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 09/09/2009 13:19:27
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                                      Package: preprocessCore
                                     -Version: 1.7.6
                                     +Version: 1.7.7
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

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Reformatted the Licence information in DESCRIPTION files to bring them into compliance.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@41539 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 06/09/2009 03:06:55
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@@ -1,11 +1,11 @@
                                      Package: preprocessCore
                                     -Version: 1.7.5
                                     +Version: 1.7.6
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Depends: methods
                                      Description: A library of core preprocessing routines
                                     -License: LGPL version 2 or newer
                                     +License: LGPL (>= 2)
                                      Collate:  normalize.quantiles.R quantile_extensions.R rma.background.correct.R rcModel.R colSummarize.R subColSummarize.R plmr.R plmd.R init.R
                                      LazyLoad: yes
                                      biocViews: Infrastructure

Browse code

(1.7.5) Fix bug when scale estimate provided to rcModelPLM()

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@41298 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 22/08/2009 14:31:04
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.7.4
                                     +Version: 1.7.5
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.7.4) Fix bug with floating point argument provided where integer expected. Use of non intialized value.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@39240 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 30/04/2009 14:41:02
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.7.2
                                     +Version: 1.7.4
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.7.2) Returned scale estimates are computed using residuals at last iteration rather than n-1 iteration

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@39235 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 30/04/2009 00:31:32
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.7.1
                                     +Version: 1.7.2
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

(1.7.1)

rcModelPLM, rcModelWPLM now accept an "input.scale" argument (and also return scale value)

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@39206 bc3139a8-67e5-0310-9ffc-ced21a209358

bolstad authored on 29/04/2009 03:18:37
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.7.0
                                     +Version: 1.7.1
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped pkg versions for BioC 2.5 devel line.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@39015 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 20/04/2009 23:44:07
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.6.0
                                     +Version: 1.7.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
                                      Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>

Browse code

Bumped pkg versions for BioC 2.4 release.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@39013 bc3139a8-67e5-0310-9ffc-ced21a209358

p.aboyoun authored on 20/04/2009 23:24:12
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@@ -1,5 +1,5 @@
                                      Package: preprocessCore
                                     -Version: 1.5.3
                                     +Version: 1.6.0
                                      Title: A collection of pre-processing functions
                                      Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>