1. preprocessCore
  2. Commit 9cd7982f6596dadaeaf32ebae9475f25963d9959
Browse code

add additional shared include files

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/preprocessCore@26950 bc3139a8-67e5-0310-9ffc-ced21a209358

Ben Bolstad authored on 08/09/2007 05:05:18
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DESCRIPTION
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 Package: preprocessCore
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-Version: 0.99.12
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+Version: 0.99.13
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 Title: A collection of pre-processing functions
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 Author: Benjamin Milo Bolstad <bmb@bmbolstad.com>
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 Maintainer: Benjamin Milo Bolstad <bmb@bmbolstad.com>
inst/include/avg_log.h
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+#ifndef AVG_LOG_H
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+#define AVG_LOG_H
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+
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+void AverageLog(double *data, int rows, int cols, int *cur_rows, double *results, int nprobes, double *resultsSE);
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+void AverageLog_noSE(double *data, int rows, int cols, int *cur_rows, double *results, int nprobes);
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+
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+void averagelog_no_copy(double *data, int rows, int cols, double *results, double *resultsSE);
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+void averagelog(double *data, int rows, int cols, double *results, double *resultsSE);
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+
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+#endif
inst/include/biweight.h
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+#ifndef BIWEIGHT_H
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+#define BIWEIGHT_H 1
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+
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+void tukeybiweight(double *data, int rows, int cols, double *results, double *resultsSE);
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+void TukeyBiweight(double *data, int rows, int cols, int *cur_rows, double *results, int nprobes, double *resultsSE);
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+double Tukey_Biweight(double *x, int length);
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+
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+#endif
inst/include/log_avg.h
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+#ifndef LOG_AVG_H
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+#define LOG_AVG_H 1
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+
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+void logaverage(double *data, int rows, int cols, double *results, double *resultsSE);
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+void LogAverage(double *data, int rows, int cols, int *cur_rows, double *results, int nprobes, double *resultsSE);
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+
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+#endif
inst/include/rlm.h
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+#ifndef RLM_H
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+#define RLM_H 1
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+
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+void rlm_fit(double *x, double *y, int rows, int cols, double *out_beta, double *out_resids, double *out_weights, double (* PsiFn)(double, double, int), double psi_k, int max_iter,int initialized);
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+
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+void rlm_wfit(double *x, double *y, double *w, int rows, int cols, double *out_beta, double *out_resids, double *out_weights, double (* PsiFn)(double, double, int), double psi_k, int max_iter,int initialized);
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+
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+
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+
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+double med_abs(double *x, int length);
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+double irls_delta(double *old, double *new, int length);
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+
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+void rlm_fit_anova(double *y, int y_rows, int y_cols,double *out_beta, double *out_resids, double *out_weights,double (* PsiFn)(double, double, int), double psi_k,int max_iter, int initialized);
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+
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+void rlm_wfit_anova(double *y, int y_rows, int y_cols, double *w, double *out_beta, double *out_resids, double *out_weights,double (* PsiFn)(double, double, int), double psi_k,int max_iter, int initialized);
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+
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+#endif