CHANGELOG
43a20ace
 1.3.6
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 Fix issue with non double arguements to normalize.quantiles.use.target()
 
 
 
dcdb89b5
 1.3.4
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 Fix memory leak in determine_target
 Set pthread stack size where appropriate
 
 
ea662521
 1.3.3
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 Fix memory leak in use_target
 
 
13d37da9
 1.3.2
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 R_subColSummary functions are now exposed at the C level
 
35246053
 1.3.1
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 rma.background.correct() was not correctly returning value when copy ==TRUE
 
740f9911
 1.1.9
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 Commit missing c source files
 
 
b2bdffd3
 1.1.8
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 Commit missing header files 
 
 
740814b4
 1.1.7
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 Fix background function bindings (for use by other packages). The implementation themselves is unchanged.
 
 
3dc33f44
 1.1.6
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 Addition of PLM-r and PLM-d
 Adjust rcModelPLM so that it takes optional row-effect estimates
 quantile normalization functions normalize.quantiles(), normalization.quantiles.determine.target(),normalize.quantiles.use.target() all now have multi-threaded support, user controlled using the R_THREADS environment variable 
 Move weightedkerneldensity.c from affyPLM to preprocessCore
 subColSummarize* functions all now have basic multi-threaded support, user controlled using the R_THREADS
 rma background correction method (also multi-threaded)
 
 
 
 1.1.5
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  The subColSummarize* functions now return a matrix with rownames. Now it is clear which rows of the resulting summary matrix correspond to which values of the group.labels variable. This helps clarify the previous situation where it done alphabetically.
 
 
 
93fa42aa
 1.1.3
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 Fix broken Makevars.in
 
 
5512327e
 1.1.2
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 Add missing Makevars.in
 
 
50fb702a
 1.1.1
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 Add experimental support for pthreads based multi-threaded quantile normalization via code contributed by Paul Gordon <gordonp@ucalgary.ca>
 
 This is only implemented for the RMA quantile normalization (ie accessible via calling the rma() function.
 
3dc33f44
 The number of threads is user controlled by setting the R_THREADS environment variable