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  • 6f9e686 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:11:44 -0400;
  • 75db306 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:11:44 -0400;
  • 9dc2845 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:08:29 -0400;
  • b641349 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:08:29 -0400;
  • 00f64b5 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:24 -0400;
  • 5eb27f7 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:24 -0400;
  • f725b0c version bump by Peng Liu <pliu55@wisc.edu> 2022-10-09 08:09:40 -0500;
  • e48018a build vignettes in html instead of PDF by Peng Liu <pliu55@wisc.edu> 2022-10-09 08:02:44 -0500;
  • fdb6327 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:53:41 +0000;
  • 181f95b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:53:41 +0000;
  • c9e5f4a bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:50:01 +0000;
  • 65986cf (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:50:01 +0000;
  • 4240e6a bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:41:41 +0000;
  • 3e967c2 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:41:41 +0000;
  • dea356a bump to 1.7.1 by Peng Liu <pliu55@wisc.edu> 2020-11-11 22:51:09 -0600;
  • c99b79b add more biocViews by Peng Liu <pliu55@wisc.edu> 2020-11-11 22:41:19 -0600;
  • 3d4d850 add Genome Research citation by Peng Liu <pliu55@wisc.edu> 2020-11-11 22:33:57 -0600;
  • e31b345 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:43:36 -0400;
  • 2a91c54 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:43:36 -0400;
  • e304976 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:24:23 +0000;
  • c9e8265 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:24:23 +0000;
  • 2e8432e bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:31 -0400;
  • cc8b027 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:31 -0400;
  • de2c577 bump version to 1.1.2 by Peng Liu <pliu55@wisc.edu> 2019-05-13 21:28:27 -0500;
  • 27d09d2 make printed message more specific by Peng Liu <pliu55@wisc.edu> 2019-05-13 21:27:47 -0500;
  • 186ce5b bump version to 1.1.1 by Peng Liu <pliu55@wisc.edu> 2019-05-13 16:32:51 -0500;
  • f02d2dd Merge branch 'master' of git.bioconductor.org:packages/pram by Peng Liu <pliu55@wisc.edu> 2019-05-13 16:30:33 -0500;
  • fedbda4 Merge branch 'RELEASE_3_9' of git.bioconductor.org:packages/pram by Peng Liu <pliu55@wisc.edu> 2019-05-13 16:26:10 -0500;
  • bf04cc2 bump version to 1.0.1 by Peng Liu <pliu55@wisc.edu> 2019-05-13 16:05:45 -0500;
  • f6ec38f add citation by Peng Liu <pliu55@wisc.edu> 2019-05-13 16:05:30 -0500;
  • 57ca7b9 Update README.md by Peng Liu <pliu55@users.noreply.github.com> 2019-05-13 15:44:10 -0500;
  • ecfe707 Update README.md by Peng Liu <pliu55@users.noreply.github.com> 2019-05-13 15:41:22 -0500;
  • 98f7f12 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:16:27 -0400;
  • 7c603a1 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:14 -0400;
  • bf7a6c8 bump version to 0.99.18 by Peng Liu <pliu55@wisc.edu> 2019-03-28 22:14:37 -0500;
  • b74f031 add bug report url by Peng Liu <pliu55@wisc.edu> 2019-03-27 09:43:00 -0500;
  • 7e84c99 add github url by Peng Liu <pliu55@wisc.edu> 2019-03-26 21:43:49 -0500;
  • c768141 update email address by Peng Liu <pliu55@wisc.edu> 2019-03-25 09:53:09 -0500;
  • 459a329 update email address by Peng Liu <pliu55@wisc.edu> 2019-03-25 09:40:31 -0500;
  • 5aa74e2 update by Peng Liu <pliu55@wisc.edu> 2019-03-24 16:51:52 -0500;
  • d22c356 bump to 0.99.17 by Peng Liu <pliu55@wisc.edu> 2019-03-19 20:46:05 -0500;
  • aacb050 bump to 0.99.16 by Peng Liu <pliu55@wisc.edu> 2019-03-19 19:47:53 -0500;
  • e05cfdf remove commented out lines by Peng Liu <pliu55@wisc.edu> 2019-03-19 19:45:50 -0500;
  • e090258 bump version to 0.99.15 by Peng Liu <pliu55@wisc.edu> 2019-03-05 21:12:16 -0600;
  • 2e04601 shorten def2StepManager() to < 50 lines by Peng Liu <pliu55@wisc.edu> 2019-03-05 21:11:15 -0600;
  • 527a7f8 bump version to 0.99.14 by Peng Liu <pliu55@wisc.edu> 2019-03-05 16:49:18 -0600;
  • 011191b remove parallel from Imports by Peng Liu <pliu55@wisc.edu> 2019-03-05 16:37:56 -0600;
  • 20b54e9 stop importing mclapply or mcmapply by Peng Liu <pliu55@wisc.edu> 2019-03-05 16:35:28 -0600;
  • b50d16a remove man for GTF by Peng Liu <pliu55@wisc.edu> 2019-03-05 16:34:57 -0600;
  • 7d06dda correct a typo by Peng Liu <pliu55@wisc.edu> 2019-03-05 16:34:24 -0600;
  • 6cd1d49 remove GTF class by Peng Liu <pliu55@wisc.edu> 2019-03-05 16:26:37 -0600;
  • 5a1c6d7 replace mclapply and mcmapply by bplapply and bpmapply by Peng Liu <pliu55@wisc.edu> 2019-03-04 13:49:04 -0600;
  • 34a9d2c bump version to 0.99.13 by Peng Liu <pliu55@wisc.edu> 2019-01-19 10:28:55 -0600;
  • 876af23 bump version to 0.99.12 by Peng Liu <pliu55@wisc.edu> 2019-01-17 21:28:49 -0600;
  • 565382c bump version to 0.99.11 by Peng Liu <pliu55@wisc.edu> 2019-01-17 21:05:04 -0600;
  • 41af525 bump version to 0.99.10 by Peng Liu <pliu55@wisc.edu> 2019-01-17 20:25:25 -0600;
  • ef121c6 remove unused test files by Peng Liu <pliu55@wisc.edu> 2019-01-17 20:24:22 -0600;
  • 3fca7ee remove unused ModelGTF.R by Peng Liu <pliu55@wisc.edu> 2019-01-17 20:23:52 -0600;
  • c995ccf remove unused test lines by Peng Liu <pliu55@wisc.edu> 2019-01-17 20:23:09 -0600;
  • 753fae0 bump version to 0.99.9 by Peng Liu <pliu55@wisc.edu> 2019-01-17 13:35:23 -0600;
  • b63e95f bump version to 0.99.8 by Peng Liu <pliu55@wisc.edu> 2019-01-17 11:52:19 -0600;
  • 03cb5ef bump version to 0.99.7 by Peng Liu <pliu55@wisc.edu> 2019-01-17 11:03:12 -0600;
  • 80c0563 bump version to 0.99.6 by Peng Liu <pliu55@wisc.edu> 2019-01-17 10:40:35 -0600;
  • 150901d add BiocManager to travis by Peng Liu <pliu55@wisc.edu> 2019-01-17 09:26:36 -0600;
  • 47a53c7 version bump by Peng Liu <pliu55@wisc.edu> 2019-01-17 09:17:17 -0600;
  • 29fd620 update NEWS by Peng Liu <pliu55@wisc.edu> 2019-01-17 09:16:54 -0600;
  • c08e58e update vignette by Peng Liu <pliu55@wisc.edu> 2019-01-17 09:16:31 -0600;
  • 351c727 use unzipped files to speed up check() by Peng Liu <pliu55@wisc.edu> 2019-01-17 09:14:33 -0600;
  • 0f047e4 shorten test tasks to speed up check() by Peng Liu <pliu55@wisc.edu> 2019-01-17 09:12:23 -0600;
  • 86ec9c1 do not test examples to speed up check(). all examples are in vignette, no need to run twice by Peng Liu <pliu55@wisc.edu> 2019-01-17 09:09:28 -0600;
  • 9ed106e bump version by Peng Liu <pliu55@wisc.edu> 2019-01-16 21:16:25 -0600;
  • 449e61e set sudo to true by Peng Liu <pliu55@wisc.edu> 2019-01-16 20:40:52 -0600;
  • 0c6f5f5 define slot for MAX_CHROM_LEN by Peng Liu <pliu55@wisc.edu> 2019-01-16 20:40:08 -0600;
  • e08e182 update document by Peng Liu <pliu55@wisc.edu> 2019-01-16 20:17:12 -0600;
  • 11075a4 test with locally installed external software by Peng Liu <pliu55@wisc.edu> 2019-01-16 20:15:51 -0600;
  • d04a085 correct R-chunk tag; update/add content by Peng Liu <pliu55@wisc.edu> 2019-01-16 20:14:53 -0600;
  • 71fd35d print msg for output file by Peng Liu <pliu55@wisc.edu> 2019-01-16 20:13:43 -0600;
  • 6b61e7a stop downloading external software by Peng Liu <pliu55@wisc.edu> 2019-01-16 20:13:06 -0600;
  • a7354b5 update by Peng Liu <pliu55@wisc.edu> 2019-01-14 21:35:43 -0600;
  • 461e45a add SystemsRequirements by Peng Liu <pliu55@wisc.edu> 2019-01-14 21:35:32 -0600;
  • 98ab2bf rename isFileExisted() to fileExists() by Peng Liu <pliu55@wisc.edu> 2019-01-14 17:06:48 -0600;
  • d88200d remove unused workflow figure by Peng Liu <pliu55@wisc.edu> 2019-01-14 16:01:13 -0600;
  • 905ba13 add initial content by Peng Liu <pliu55@wisc.edu> 2019-01-14 15:54:46 -0600;
  • 990e011 elaborate Description by Peng Liu <pliu55@wisc.edu> 2019-01-14 15:50:57 -0600;
  • 031b708 not testing for r-release by Peng Liu <pliu55@wisc.edu> 2018-12-10 16:50:33 -0600;
  • 81aeb2b bump version by Peng Liu <pliu55@wisc.edu> 2018-12-10 15:12:29 -0600;
  • b71f264 make R version requirement to >= 3.6 by Peng Liu <pliu55@wisc.edu> 2018-12-10 15:11:43 -0600;
  • c4fd1ac bump version by Peng Liu <pliu55@wisc.edu> 2018-12-10 14:59:37 -0600;
  • e3bd593 add travis tag by Peng Liu <pliu55@wisc.edu> 2018-12-10 14:21:08 -0600;
  • 391e224 let travis check on r-devel and bioc-devel by Peng Liu <pliu55@wisc.edu> 2018-12-10 14:20:23 -0600;
  • 8e34b2d index bam file by Peng Liu <pliu55@wisc.edu> 2018-12-10 14:01:13 -0600;
  • e472869 remove yieldSize from BamFile() by Peng Liu <pliu55@wisc.edu> 2018-12-10 14:00:49 -0600;
  • 4e73331 add R version requirement by Peng Liu <pliu55@wisc.edu> 2018-12-10 09:00:47 -0600;
  • 2d129d0 remove R version requirement by Peng Liu <pliu55@wisc.edu> 2018-12-10 08:58:40 -0600;
  • 84fc304 version bump by Peng Liu <pliu55@wisc.edu> 2018-12-10 08:38:41 -0600;
  • 8ddb2e4 change sudo by Peng Liu <pliu55@wisc.edu> 2018-12-09 22:07:32 -0600;
  • 39c9878 build only on my machine by Peng Liu <pliu55@wisc.edu> 2018-12-09 19:47:27 -0600;
  • bff466c run in single-thread & build only on my machine by Peng Liu <pliu55@wisc.edu> 2018-12-09 19:47:05 -0600;
  • 706e662 shorten commnets by Peng Liu <pliu55@wisc.edu> 2018-12-09 19:46:29 -0600;
  • 0a0ffff remove commented lines & test on my own machine by Peng Liu <pliu55@wisc.edu> 2018-12-09 18:07:16 -0600;