.gitignore
README.md
vignettes/polyester.md
vignettes/chr22_small.fa
vignettes/empirical_reads
vignettes/simulated_reads
vignettes/timecourse_reads
vignettes/polyester.html
make_error_models.R
ErrorModels.md
build_error_models.py
make_fraglen_model.R
insert_sizes.sh
rnaf_pos_bias.csv
cdna_pos_bias.csv
^\.travis\.yml$
make_positional_bias_model.R
make_gc_bias.R
GC_effects.pdf
illumina4_error.pdf
illumina4_mate1.pdf
illumina4_mate2.pdf
illumina5_mate1.pdf
illumina5_mate2.pdf
illumina5_single.pdf
illumina4_single.pdf
GC_effects.png