Bioconductor Code: phenopath

Graph of phenopath

4c9737a (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:58:06 -0400;
2f83790 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:58:06 -0400;
84e038c bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:55:00 -0400;
cc930bb (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:55:00 -0400;
bd532b7 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:55 -0400;
8124a22 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:55 -0400;
3d69f99 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:41:41 +0000;
7642e47 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:41:41 +0000;
62c00b5 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:36:17 +0000;
2e3261b (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:36:17 +0000;
7b40dc9 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:28:40 +0000;
de82be6 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:28:40 +0000;
b608861 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:25:22 -0400;
1a99e25 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:25:22 -0400;
dffcb63 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:08:37 +0000;
74c96db (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:08:37 +0000;
3697c7a bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:21 -0400;
0ff6e18 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:31 -0400;
5ea0ad4 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:14:56 -0400;
eab52de (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:07 -0400;
181cbf9 (origin/RELEASE_3_8, RELEASE_3_8) Bump version number to 1.6.7 by Kieran Campbell <kieranrcampbell@gmail.com> 2019-03-21 10:24:03 -0700;
013728a Bump version number to 1.7.3 by Kieran Campbell <kieranrcampbell@gmail.com> 2019-03-21 10:20:41 -0700;
fe2d9a6 Bump version number to trigger bioc rebuild by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:38:22 -0800;
2104f1b Change to as_tibble by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:37:24 -0800;
d4ed1d7 Update vignette to fix bioconductor build error by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:14:26 -0800;
e88a0e1 Update description by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:38:22 -0800;
de6847c Bump version number to trigger bioc rebuild by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:38:22 -0800;
d1729d0 Change to as_tibble by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:37:24 -0800;
c1dc873 Merge remote-tracking branch 'upstream/master' by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:32:18 -0800;
e749b5c Update vignette to fix bioconductor build error by Kieran Campbell <kieranrcampbell@gmail.com> 2019-01-18 10:14:26 -0800;
aad906d Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:44:01 -0500;
5ed556c Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:43:59 -0500;
0fd98ff bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:37 -0400;
f960e87 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:05 -0400;
c583177 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
cc57f18 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:47 -0400;
5120478 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:31 -0400;
3e38a3b (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:32 -0400;
ff5bd63 Move to SummarizedExperiment by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 23:58:51 +0100;
283ee83 Remove any reference to scater by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 23:03:17 +0100;
fe97844 Now compatable with singlecellexperiment by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 22:31:47 +0100;
0e21797 Merge remote-tracking branch 'upstream/master' by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-24 21:58:08 +0100;
001fe02 Updated vignette pathway score -> pathway loading by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-03 15:50:27 +0100;
4c9e3df Pathway score -> pathway loading by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-03 15:45:38 +0100;
c24c487 Updated README by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-03 15:07:25 +0100;
41502a8 Final update to vignette by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-03 14:36:57 +0100;
98bd23b Added interactions function; updated documentation by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-03 14:21:41 +0100;
99febdc Bug fix; now works with x as factor by Kieran Campbell <kieranrcampbell@gmail.com> 2017-10-02 17:43:48 +0100;
5bcfc63 add ClusterJudge, OPWeight, phenopath, scmap by Martin Morgan <mtmorgan@fhcrc.org> 2017-07-14 16:36:55 +0000;
a236813 Removed boost linking dependency by Kieran Campbell <kieranrcampbell@gmail.com> 2017-07-09 11:13:05 +0100;
7d458aa Removed boost dependency; changed licence; bumped version number by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-29 14:51:07 +0100;
d1a01d1 Webhook setup wrong by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 20:33:55 +0100;
eb19c42 Removed latex from Rd and bumped version no by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 20:30:20 +0100;
ffa3d03 Add travis build status by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 19:20:31 +0100;
c4a4344 stupid formatting error in description by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 18:21:39 +0100;
3cb4c4d Added biocstyle and updated description by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 18:15:15 +0100;
404112b Added bioconductor support for travis by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 17:09:52 +0100;
9869a2c Changed version number by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 17:03:30 +0100;
76fac67 Vignette added. Fixes <a href="#2">#2</a> by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 16:55:24 +0100;
c278dd6 Passes BiocCheck() with only notes. Fixes <a href="#6">#6</a> by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 16:13:20 +0100;
ae349c2 Passes R CMD check with only 2 (easily fixable) notes by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 16:03:26 +0100;
83d3f62 phenopath() now accepts a formula for x. Added basic unit testing. Fixes <a href="#5">#5</a> by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 15:47:31 +0100;
8eb49a0 Added basic unit tests by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-28 15:16:37 +0100;
b23c936 Began work on vignette by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-27 11:03:39 +0100;
05bed16 Various updates to vignette; moved library away from boost so no more assert errors by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-23 15:03:51 +0100;
8fa9acf Made various changes to make more compatible with bioc by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-07 21:30:24 +0100;
d8b5883 Fixes <a href="#3">#3</a> by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-07 15:21:58 +0100;
7c0b348 check() without errors by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-07 12:29:48 +0100;
5755b3a Updated documentation by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-07 12:21:26 +0100;
0934abb Additional readme updates by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 18:52:35 +0100;
434d27b Updated readme by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 18:44:07 +0100;
9d52671 Added phenopath main function by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 18:30:55 +0100;
408b902 Changed t -> z and c -> lambda by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 17:21:57 +0100;
528eb96 About to rename t -> z and c -> lambda by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 17:12:33 +0100;
7b05ec8 Changed name to PhenoPath by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 16:44:11 +0100;
9b2f0c4 Fix errors by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 16:39:54 +0100;
d3be7ce Final update before forking to phenopath by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-06 16:25:53 +0100;
3069588 ELBO now monitonically increases - fixed by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-04 17:01:00 +0100;
534ffa7 Added pis to the mix by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-04 10:32:34 +0100;
684209a moved fg to separate function by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-03 17:50:45 +0100;
d615af5 ELBO now implemented correctly by Kieran Campbell <kieranrcampbell@gmail.com> 2017-06-01 16:18:54 +0100;
c77e0b2 Sped up computation of greek_sum; checked computation of fg by Kieran Campbell <kieranrcampbell@gmail.com> 2017-05-30 14:15:05 +0100;
c7a9b62 Everything working before I drunkenly destroy it on a train by Kieran Campbell <kieranrcampbell@gmail.com> 2017-05-19 20:01:29 +0100;
f195ecc minor mod to clvm by Kieran Campbell <kieranrcampbell@gmail.com> 2017-03-28 11:51:34 +0100;
d493c69 specifiy pc to initialise by Kieran Campbell <kieranrcampbell@gmail.com> 2017-03-09 12:35:05 +0000;
f6731ad changed get_sig -> significant_interations by Kieran Campbell <kieranrcampbell@gmail.com> 2017-02-22 13:20:42 +0000;
6494fa6 updated hyperpars and doc by Kieran Campbell <kieranrcampbell@gmail.com> 2017-02-22 11:57:52 +0000;
cd5c89e Added documentation; package runs by Kieran Campbell <kieranrcampbell@gmail.com> 2016-12-30 16:16:53 +0000;
a1336fa initial commit by Kieran Campbell <kieranrcampbell@gmail.com> 2016-12-30 15:28:42 +0000;