Bioconductor Code: peco

Graph of peco

38e1192 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:20:48 -0400;
52a5c2d (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:20:48 -0400;
1fbd6b0 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:16:46 -0400;
f39ad77 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:16:46 -0400;
9972336 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:21:43 -0400;
b4c1a1b (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:21:43 -0400;
7126287 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:03:56 +0000;
4f0d7d2 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:03:56 +0000;
4ee9c2a Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:41:45 -0500;
15c7dfb bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:58:29 +0000;
bbd7e91 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:58:28 +0000;
536dd19 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:50:58 +0000;
32214ef (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:50:58 +0000;
201fc65 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:55:13 -0400;
c468fc5 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:55:13 -0400;
7617ee5 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:35:20 +0000;
3c16ee0 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:35:20 +0000;
6546e62 Merge pull request <a href="#38">#38</a> from jdblischak/rcmdcheck by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2020-04-10 11:07:11 -0400;
785e474 Bump to version 0.99.16. by John Blischak <jdblischak@gmail.com> 2020-04-10 10:43:31 -0400;
63c3941 Use R release on Travis. [skip appveyor] by John Blischak <jdblischak@gmail.com> 2020-04-10 10:58:57 -0400;
1bd76cb Avoid NOTE about non-standard files. by John Blischak <jdblischak@gmail.com> 2020-04-10 10:38:57 -0400;
776947f Avoid R CMD check WARNING about minimum R version dependency. by John Blischak <jdblischak@gmail.com> 2020-04-10 10:36:34 -0400;
9f1a5ab Update AppVeyor build. [skip travis] by John Blischak <jdblischak@gmail.com> 2020-04-09 17:14:54 -0400;
2291b36 Merge pull request <a href="#36">#36</a> from jdblischak/dependencies by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2020-04-09 10:22:16 -0400;
8b32a0b Relax minimum versions for dependencies. Close <a href="#35">#35</a> by John Blischak <jdblischak@gmail.com> 2020-04-08 12:54:50 -0400;
1e79324 version bump to 0.99.14 and fixes to Travis-CI and AppVeyor by jhsiao999 <joyce.hsiao1@gmail.com> 2020-03-23 14:16:52 -0500;
7f38529 version bump to 0.99.13 and bug fixes by jhsiao999 <joyce.hsiao1@gmail.com> 2020-03-23 13:47:40 -0500;
2afba13 version bump and README.md update by jhsiao999 <joyce.hsiao1@gmail.com> 2020-03-23 13:23:04 -0500;
1c2b1fd fixed some bugs in vignette.Rmd by jhsiao999 <joyce.hsiao1@gmail.com> 2020-03-23 13:10:27 -0500;
c5fae46 rename fit_trendfilter_generic to fit_trendfilter by jhsiao999 <joyce.hsiao1@gmail.com> 2020-03-23 12:50:59 -0500;
53ff5eb debugging by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-26 14:13:57 -0600;
c04a276 add matrix input option by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-26 13:44:44 -0600;
9da591d support for matrix input by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-25 12:30:48 -0600;
ee94ff4 change dependency to R4.0 by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-03 14:18:04 -0600;
45dad56 bump to v0.99.9 by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-03 12:08:43 -0600;
fe40432 Delete peco.Rproj by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2020-01-03 19:06:12 +0100;
38e78ec trigger bioconductor build by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-03 11:30:40 -0600;
15b0779 vignettes edits by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-03 10:45:02 -0600;
da0b872 bump to v0.99.7 \n add cell cycle gnee rda by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-03 10:23:25 -0600;
01df6b5 bump to v0.99.6 by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 16:20:14 -0600;
31fc4a2 appveyor check R3.5.0 by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 14:01:15 -0600;
5115637 update readme by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 13:30:05 -0600;
d94177c update README by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 13:13:17 -0600;
a972eb5 update readme by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 12:09:36 -0600;
d0ab63e add foreach to import field by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 11:49:29 -0600;
04a6b23 stop R3.5 build option by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 11:49:10 -0600;
04bce9a edit build option R3.5 to use 3.5.0 by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 11:02:59 -0600;
60fa937 add vignettes by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 11:02:35 -0600;
b3c7453 edit build options by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 10:40:55 -0600;
2e61abc Merge pull request <a href="#33">#33</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2020-01-02 16:39:16 +0100;
ff084df update NEWS and README by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 09:38:21 -0600;
f3366d0 issue #31: is(Y_test, SingleCellExperiment) by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 08:02:39 -0600;
3c21ec3 Merge pull request <a href="#32">#32</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2020-01-02 14:57:30 +0100;
c45c7f6 add special case by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 07:55:45 -0600;
b80d962 Merge branch 'master' of https://github.com/jhsiao999/peco into dev by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 07:51:12 -0600;
c21a26a add special case when no zero count by jhsiao999 <joyce.hsiao1@gmail.com> 2020-01-02 07:46:42 -0600;
e0f8604 Merge pull request <a href="#30">#30</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-10-28 23:25:53 -0400;
f8e7a53 fix vignette by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-28 19:46:39 -0500;
0df296a fix vignette by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-28 07:38:41 -0500;
a6897cc update to 0.99.5 by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-27 23:59:20 -0500;
30ac483 ignore notes by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-27 13:32:21 -0500;
89649a6 change to use scater to do cpm and return SingleCellExperiment object by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-19 17:47:21 -0500;
0f3aa39 minor update by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-19 17:46:57 -0500;
9cd84aa change assay name from expr to counts by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-19 17:29:29 -0500;
e033320 minor typos by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 20:45:25 -0500;
d6e45f2 minor typos by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 20:23:50 -0500;
9606bb8 Merge pull request <a href="#29">#29</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-10-12 21:01:39 -0400;
3226cb3 change output of data_transform_quantile to SingleCellExperiment \n and make changes in examples and vignettes accordingly by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 20:00:13 -0500;
695d9f6 use seq_along instead of seq_len(length(...)) by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 17:48:52 -0500;
175d9bc if (plot.it == TRUE) to if (plot.it) by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 17:45:38 -0500;
2feb1ba change data names to new ones by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 17:41:42 -0500;
c84fc71 update documentation by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 17:37:14 -0500;
f4151b6 change data object names in examples by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 17:36:50 -0500;
feb93f4 do not commit code for making package data by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 17:35:11 -0500;
31a98e5 use desciptive names for data by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 17:34:20 -0500;
2e14b8c update documentation by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 16:47:49 -0500;
f157626 use lapply instead of sapply by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 16:47:03 -0500;
f7af57e change doParallel default to 2 cores by jhsiao999 <joyce.hsiao1@gmail.com> 2019-10-12 15:48:56 -0500;
953441a Merge pull request <a href="#28">#28</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-23 10:32:19 -0400;
9e42c98 bump to v0.99.4 by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-23 09:31:50 -0500;
5257226 Merge pull request <a href="#27">#27</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-20 21:42:03 -0400;
78b9695 try R3.6.1 by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-20 20:41:26 -0500;
3971dae Merge pull request <a href="#26">#26</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-20 21:21:43 -0400;
19aa852 minor fixes in examples by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-20 20:21:02 -0500;
0ae7470 Merge pull request <a href="#25">#25</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-19 08:30:39 -0400;
0314ef6 minor fixes by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-19 07:29:50 -0500;
4c40940 Merge pull request <a href="#24">#24</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-19 07:49:03 -0400;
418c24f change from eset to sce by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-19 06:48:38 -0500;
d3d5b66 Merge pull request <a href="#23">#23</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-19 01:27:36 -0400;
8f5917e bump to v0.99.3 by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-19 00:26:30 -0500;
3db4bef Merge pull request <a href="#22">#22</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-19 01:24:20 -0400;
fdf5549 changed to use SingleCellExperiment class by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-19 00:23:14 -0500;
9509566 Merge pull request <a href="#21">#21</a> from jhsiao999/master by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-16 12:40:45 -0400;
f240bb9 Update .travis.yml by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-16 12:39:24 -0400;
6e10318 Merge pull request <a href="#20">#20</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-16 08:21:45 -0400;
ce01ea9 bump version to 0.99.1 \n add changes to news \n do not run repeated examples \n add @seealso and @family tags by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-16 07:20:58 -0500;
055f4e8 Update R version dependency from 3.5 to 3.6 by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-16 06:21:07 -0500;
2a2b1ad add peco.Rproj to .gitignore by jhsiao999 <joyce.hsiao1@gmail.com> 2019-09-16 06:18:15 -0500;
53b0aea Merge pull request <a href="#19">#19</a> from jhsiao999/dev by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-13 13:37:50 -0400;
aa2a3b0 Merge pull request <a href="#18">#18</a> from jdblischak/rcmdcheck by Chiaowen Joyce Hsiao <joyce.hsiao1@gmail.com> 2019-09-13 12:07:14 -0400;