Encoding: UTF-8
Type: Package
Package: peco
Version: 1.15.0
Title: A Supervised Approach for **P**r**e**dicting **c**ell Cycle
    Pr**o**gression using scRNA-seq data
Authors@R: c(
        person("Chiaowen Joyce","Hsiao", email="joyce.hsiao1@gmail.com", 
                    role=c("aut","cre")),
        person("Matthew", "Stephens", email="stephens999@gmail.com", role="aut"),
        person("John", "Blischak", email = "jdblischak@gmail.com", role="ctb"),
        person("Peter", "Carbonetto", email = "peter.carbonetto@gmail.com",
                role="ctb"))
Description: Our approach provides a way to assign continuous cell cycle phase 
    using scRNA-seq data, and consequently, allows to identify cyclic trend 
    of gene expression levels along the cell cycle. This package provides method
    and training data, which includes scRNA-seq data collected from 6 individual 
    cell lines of induced pluripotent stem cells (iPSCs), and also continuous cell 
    cycle phase derived from FUCCI fluorescence imaging data. 
URL: https://github.com/jhsiao999/peco
BugReports: https://github.com/jhsiao999/peco/issues
License: GPL (>= 3)
Depends: R (>= 2.10)
Imports:
    assertthat,
    circular,
    conicfit,
    doParallel,
    foreach,
    genlasso (>= 1.4),
    graphics,
    methods,
    parallel,
    scater,
    SingleCellExperiment,
    SummarizedExperiment,
    stats,
    utils
Suggests: 
    knitr,
    rmarkdown
biocViews:
    Sequencing, RNASeq, GeneExpression, Transcriptomics, SingleCell,
    Software, StatisticalMethod, Classification, Visualization
VignetteBuilder: knitr
RoxygenNote: 6.1.1