1. ontoProc
  2. Graph
Graph of ontoProc
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  • f24d2eb (HEAD -> devel, origin/master, origin/devel, origin/HEAD) new owlents vignette by vjcitn <stvjc@channing.harvard.edu> 2023-11-17 08:18:47 -0500;
  • dd060d2 update plot method, add unit tests by vjcitn <stvjc@channing.harvard.edu> 2023-11-08 09:09:47 -0500;
  • dbc3d0d cache tool by vjcitn <stvjc@channing.harvard.edu> 2023-11-05 15:10:08 -0500;
  • a34909d passes check with plotting script by vjcitn <stvjc@channing.harvard.edu> 2023-11-05 13:08:37 -0500;
  • 711721b saving script by vjcitn <stvjc@channing.harvard.edu> 2023-11-05 07:39:35 -0500;
  • ef0e7ee more ancestor handling by vjcitn <stvjc@channing.harvard.edu> 2023-11-04 20:30:15 -0400;
  • 9156c7a more owl_ops, including subclasses by vjcitn <stvjc@channing.harvard.edu> 2023-11-04 07:15:29 -0400;
  • b086025 parents added by vjcitn <stvjc@channing.harvard.edu> 2023-10-30 19:28:10 -0400;
  • 7d3d2e0 some new ops by vjcitn <stvjc@channing.harvard.edu> 2023-10-30 19:02:01 -0400;
  • 6117521 some new owl-oriented tools by vjcitn <stvjc@channing.harvard.edu> 2023-10-30 16:06:56 -0400;
  • 8ad1c1b bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:00:55 -0400;
  • 5718db1 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:00:55 -0400;
  • 46124ea bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:57:39 -0400;
  • ad47230 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:57:39 -0400;
  • 1a7a6bf bumping version to sync vers num with main that has GHA by vjcitn <stvjc@channing.harvard.edu> 2023-04-19 15:54:59 -0400;
  • f17419e passing check in main by vjcitn <stvjc@channing.harvard.edu> 2023-04-18 22:52:29 -0400;
  • 2427eb1 major updates by vjcitn <stvjc@channing.harvard.edu> 2023-04-18 13:30:09 -0400;
  • 9d840b9 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:39 -0400;
  • c0d8166 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:39 -0400;
  • e910e69 figure of use by vjcitn <stvjc@channing.harvard.edu> 2022-10-20 10:10:53 -0400;
  • d092392 various updates to vignette by vjcitn <stvjc@channing.harvard.edu> 2022-10-20 10:10:00 -0400;
  • f4a4c3c Merge branch 'master' of https://github.com/vjcitn/ontoProc by vjcitn <stvjc@channing.harvard.edu> 2022-10-20 00:29:38 -0400;
  • 6b947ac Merge branch 'main' of https://github.com/vjcitn/ontoProc by vjcitn <stvjc@channing.harvard.edu> 2022-10-20 00:29:19 -0400;
  • e699546 README by vjcitn <stvjc@channing.harvard.edu> 2022-10-20 00:28:24 -0400;
  • d6f2f56 Merge pull request <a href="#7">#7</a> from vjcitn/main by Vince Carey <stvjc@channing.harvard.edu> 2022-10-19 23:58:26 -0400;
  • 48eb4ca Merge pull request <a href="#6">#6</a> from vjcitn/master by Vince Carey <stvjc@channing.harvard.edu> 2022-10-19 23:56:41 -0400;
  • d593126 Merge branch 'main' of https://github.com/vjcitn/ontoProc by vjcitn <stvjc@channing.harvard.edu> 2022-10-19 23:55:03 -0400;
  • d0b2f68 Merge pull request <a href="#4">#4</a> from vjcitn/master by Vince Carey <stvjc@channing.harvard.edu> 2022-10-19 23:16:29 -0400;
  • 48a6e06 Merge pull request <a href="#3">#3</a> from vjcitn/main by Vince Carey <stvjc@channing.harvard.edu> 2022-10-19 23:16:03 -0400;
  • 0248f23 taking advantage of new getOnto function by vjcitn <stvjc@channing.harvard.edu> 2022-10-19 23:10:30 -0400;
  • 724cbd2 take advantage of new AnnotationHub entries by vjcitn <stvjc@channing.harvard.edu> 2022-10-19 16:43:18 -0400;
  • 3495146 Merge pull request <a href="#1">#1</a> from vjcitn/master by Vince Carey <stvjc@channing.harvard.edu> 2022-10-19 15:13:45 -0400;
  • 8538dd5 introduce getOnto by stvjc <stvjc@channing.harvard.edu> 2022-10-19 15:09:30 -0400;
  • 21c93f1 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:44:47 +0000;
  • 6a28f6f (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:44:47 +0000;
  • 7e9e5f0 fix test error by vjcitn <stvjc@channing.harvard.edu> 2022-04-15 15:13:46 -0400;
  • 3735374 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:39:25 +0000;
  • 45a31ef (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:39:25 +0000;
  • b19b568 pruning all but cell ontology, which has a complicated 'get' by vjcitn <stvjc@channing.harvard.edu> 2021-10-21 15:41:52 -0400;
  • ad76af3 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:31:28 +0000;
  • 2ba1033 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:31:28 +0000;
  • b3e5a7a revise test condition by vjcitn <stvjc@channing.harvard.edu> 2021-05-17 13:28:14 -0400;
  • 6716f87 modified code, passing check by vjcitn <stvjc@channing.harvard.edu> 2021-05-15 20:30:01 -0400;
  • 42a9152 export getMondoOnto by Vince Carey <stvjc@channing.harvard.edu> 2021-04-22 17:58:51 -0400;
  • 3132b93 introduce mondo ontology by Vince Carey <stvjc@channing.harvard.edu> 2021-04-22 17:56:09 -0400;
  • 12e61ec repair tests to work with revised cellOntology by Vince Carey <stvjc@channing.harvard.edu> 2021-04-04 15:10:22 -0400;
  • ca16fa5 update the cellOnto.rda with all tags so that CLfeats works by Vince Carey <stvjc@channing.harvard.edu> 2021-03-15 22:04:43 -0400;
  • 4618c7f bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:29:13 -0400;
  • fc0996a (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:29:13 -0400;
  • a151850 add Aaron's findCommonAncestors by Vince Carey <stvjc@channing.harvard.edu> 2020-09-02 08:29:36 -0400;
  • 2c91e8e (origin/RELEASE_3_11, RELEASE_3_11) make vignette better for AnVILPublish by Vince Carey <stvjc@channing.harvard.edu> 2020-08-18 23:10:00 -0400;
  • de7edd4 remove eval/echo=FALSE clauses by Vince Carey <stvjc@channing.harvard.edu> 2020-08-18 22:01:54 -0400;
  • 50dbecd bump version by Vince Carey <stvjc@channing.harvard.edu> 2020-08-18 21:43:16 -0400;
  • f7d7519 remove SingleR place celldex by Vince Carey <stvjc@channing.harvard.edu> 2020-08-18 21:40:44 -0400;
  • fcd3c51 adding cache discipline for getCellOnto by Vince Carey <stvjc@channing.harvard.edu> 2020-05-24 06:38:31 -0400;
  • 3d358e5 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:11:43 +0000;
  • ced8ae1 bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:11:43 +0000;
  • bc1a1bc return graphNEL invisibly from onto_plot2 by Vince Carey <stvjc@channing.harvard.edu> 2020-03-10 13:49:45 -0400;
  • 5447ef6 (origin/RELEASE_3_10, RELEASE_3_10) fix cex binding error in graphNEL.R by Vince Carey <stvjc@channing.harvard.edu> 2020-03-08 08:07:59 -0400;
  • 8bb74f8 fix cex binding by Vince Carey <stvjc@channing.harvard.edu> 2020-03-08 08:06:46 -0400;
  • 916f549 bad cex binding in graphNEL.R fixed by Vince Carey <stvjc@channing.harvard.edu> 2020-03-08 08:00:59 -0400;
  • e412ae5 add common_classes by Vince Carey <stvjc@channing.harvard.edu> 2020-02-03 08:42:18 -0500;
  • 4f3dbc2 minor updates by Vince Carey <stvjc@channing.harvard.edu> 2020-02-02 10:03:14 -0500;
  • df082c4 turn off novel code dealing with label.ont type stuff in SingleR by Vince Carey <stvjc@channing.harvard.edu> 2020-02-02 08:43:06 -0500;
  • 85a8a20 add connect_classes by Vince Carey <stvjc@channing.harvard.edu> 2020-02-02 08:35:07 -0500;
  • 5b91fc3 use label.ont in colData by Vince Carey <stvjc@channing.harvard.edu> 2020-01-31 15:03:50 -0500;
  • 6f23107 don't specialize bind_formal_tags and subset_descendants to SCE, simplify to SE by Vince Carey <stvjc@channing.harvard.edu> 2020-01-31 14:58:54 -0500;
  • ded205d scotching a warning in CLfeat so that ctmarks is a little quieter by Vince Carey <stvjc@channing.harvard.edu> 2020-01-27 05:58:47 -0500;
  • eab129c respond to more rigorous logic check in recent R, for getLeavesFromTerm by Vince Carey <stvjc@channing.harvard.edu> 2020-01-23 06:36:31 -0500;
  • 297ff21 added subset_descendants and support by Vince Carey <stvjc@channing.harvard.edu> 2020-01-23 06:06:22 -0500;
  • 342dc75 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:33 -0400;
  • 673a227 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:52 -0400;
  • c2e9177 adding tree processing functionality by Vince Carey <stvjc@channing.harvard.edu> 2019-06-04 07:52:54 -0400;
  • 95f7841 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:15:19 -0400;
  • 9cb53f1 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:09 -0400;
  • 49e60ad annotation update affected tests, resolved by Vince Carey <stvjc@channing.harvard.edu> 2019-04-29 13:57:33 -0400;
  • 10191f4 annotation evolution necessitates change to test condition by Vince Carey <stvjc@channing.harvard.edu> 2019-04-22 14:36:17 -0400;
  • 34a1b81 adding app sketch; shinyapps.io not taking R 3.6 by Vince Carey <stvjc@channing.harvard.edu> 2019-02-17 06:19:33 -0500;
  • a6abaf4 updating README.md resources by Vince Carey <stvjc@channing.harvard.edu> 2019-02-17 04:51:01 -0500;
  • 331d0fe finishing vignette by Vince Carey <stvjc@channing.harvard.edu> 2019-02-16 17:16:07 -0500;
  • 125eda1 minor changes by Vince Carey <stvjc@channing.harvard.edu> 2019-02-16 11:59:53 -0500;
  • 5305600 new material for extending an ontology, updated vignette by Vince Carey <stvjc@channing.harvard.edu> 2019-02-16 11:24:45 -0500;
  • 222f4ce commented on substr and added sym2CellOnto in vignette by Vince Carey <stvjc@channing.harvard.edu> 2019-02-12 08:30:21 -0500;
  • 6d50c6d added sym2CellOnto function by Vince Carey <stvjc@channing.harvard.edu> 2019-02-12 08:24:56 -0500;
  • 4b5d024 updated vignette by Vince Carey <stvjc@channing.harvard.edu> 2019-02-11 22:03:50 -0500;
  • dbc1ba8 ctmarks app seems stable now by Vince Carey <stvjc@channing.harvard.edu> 2019-02-11 18:22:45 -0500;
  • 4f04a8c revised ctmarks app with helpText by Vince Carey <stvjc@channing.harvard.edu> 2019-02-11 15:20:09 -0500;
  • c74ecd2 reduced size of PROonto.rda by Vince Carey <stvjc@channing.harvard.edu> 2019-02-10 22:04:54 -0500;
  • d28d927 update with graphNEL support by Vince Carey <stvjc@channing.harvard.edu> 2019-02-10 16:37:50 -0500;
  • d0e8dbb updating with more current Cell Ontology by Vince Carey <stvjc@channing.harvard.edu> 2018-11-21 07:20:00 -0500;
  • 0c7232d bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:38 -0400;
  • 1ae33ab (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:06 -0400;
  • 2f53fb3 adding in HCA ontology by Vince Carey <stvjc@channing.harvard.edu> 2018-08-15 16:48:14 -0400;
  • 515de52 added infrastructure for liberalMap by Vince Carey <stvjc@channing.harvard.edu> 2018-07-19 08:47:41 -0400;
  • 4162d1e (origin/RELEASE_3_7, RELEASE_3_7) responding to issue with NEWS by Vince Carey <stvjc@channing.harvard.edu> 2018-05-11 16:17:31 -0400;
  • 2d744df responding to issue with NEWS by Vince Carey <stvjc@channing.harvard.edu> 2018-05-11 16:16:08 -0400;
  • 0eae811 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
  • 7a7765b bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:48 -0400;
  • 1671c06 add in vignette update by Vince Carey <stvjc@channing.harvard.edu> 2018-03-01 10:57:26 -0500;
  • 4a47985 adding minicorpus for SRA annotation by Vince Carey <stvjc@channing.harvard.edu> 2018-03-01 10:40:10 -0500;