1. ontoProc
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Name Mode Size
..
CLfeats.Rd 100755 1 kb
PROSYM.Rd 100755 1 kb
TermSet-class.Rd 100755 1 kb
allGOterms.Rd 100755 0 kb
ancestors.Rd 100644 0 kb
ancestors_names.Rd 100644 1 kb
bind_formal_tags.Rd 100755 1 kb
c-TermSet-method.Rd 100755 0 kb
cellTypeToGO.Rd 100755 1 kb
children_names.Rd 100644 1 kb
cleanCLOnames.Rd 100755 0 kb
common_classes.Rd 100755 1 kb
connect_classes.Rd 100755 1 kb
ctmarks.Rd 100755 1 kb
cyclicSigset.Rd 100755 1 kb
demoApp.Rd 100755 0 kb
dropStop.Rd 100755 1 kb
fastGrep.Rd 100755 1 kb
findCommonAncestors.Rd 100755 3 kb
getCellOnto.Rd 100644 1 kb
getLeavesFromTerm.Rd 100755 1 kb
getOnto.Rd 100644 1 kb
get_classes.Rd 100644 0 kb
get_ordo_owl_path.Rd 100644 0 kb
humrna.Rd 100755 0 kb
improveNodes.Rd 100755 0 kb
labels.owlents.Rd 100644 0 kb
ldfToTerms.Rd 100755 2 kb
liberalMap.Rd 100755 1 kb
makeSelectInput.Rd 100755 1 kb
make_graphNEL_from_ontology_plot.Rd 100755 1 kb
map2prose.Rd 100755 0 kb
mapOneNaive.Rd 100755 1 kb
minicorpus.Rd 100755 1 kb
nomenCheckup.Rd 100755 1 kb
onto_plot2.Rd 100755 1 kb
onto_roots.Rd 100755 0 kb
owl2cache.Rd 100644 1 kb
packDesc2019.Rd 100755 0 kb
packDesc2021.Rd 100644 1 kb
packDesc2022.Rd 100644 1 kb
packDesc2023.Rd 100644 1 kb
parents.Rd 100644 0 kb
plot.owlents.Rd 100644 1 kb
print.owlents.Rd 100644 0 kb
recognizedPredicates.Rd 100755 0 kb
secLevGen.Rd 100755 1 kb
selectFromMap.Rd 100755 1 kb
setup_entities.Rd 100644 1 kb
seur3kTab.Rd 100755 0 kb
siblings_TAG.Rd 100755 1 kb
stopWords.Rd 100755 1 kb
sub-.owlents.Rd 100644 0 kb
subclasses.Rd 100644 0 kb
subset_descendants.Rd 100755 1 kb
sym2CellOnto.Rd 100755 1 kb
url_ok.Rd 100644 0 kb
valid_ontonames.Rd 100644 0 kb
README.md
ontoProc -- an R package for working with multiple biomedical ontologies Includes the ctmarks app for examining cell types through ontological characterization ![](https://github.com/vjcitn/ontoProc/raw/main/ctmarks.png) We also consider how to produce OBO stanzas for expanding existing ontologies ![](https://github.com/vjcitn/ontoProc/raw/main/ldfToTerm.png) With this we can formally describe novel cell types (CL:X01 is an 'extended CL tag') ![](https://github.com/vjcitn/ontoProc/raw/main/GRIK3table.png)