1. ontoProc
  2. R
    3. Clone ZIP TAR
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Name Mode Size
..
CLextend.R 100755 6 kb
CLfeats.R 100755 8 kb
bind_formal_tags.R 100755 1 kb
clfixer.R 100755 2 kb
common_classes.R 100755 1 kb
connect_classes.R 100755 2 kb
countClasses.R 100755 1 kb
ctmarks.R 100755 5 kb
data.R 100755 3 kb
dropStop.R 100755 1 kb
fastGrep.R 100755 1 kb
findCommonAncestors.R 100755 4 kb
getOntos.R 100755 6 kb
get_ordo_owl_path.R 100644 0 kb
graphNEL.R 100755 2 kb
mapNaive.R 100755 3 kb
owl2cache.R 100644 1 kb
owl_ops.R 100644 7 kb
plot.owlents.R 100644 1 kb
roots.R 100755 0 kb
seurTab.R 100755 0 kb
shiny.R 100755 3 kb
subset_descendants.R 100755 1 kb
sym2CellOnto.R 100755 3 kb
termProc.R 100755 5 kb
treeproc.R 100755 1 kb
zzz.R 100644 1 kb
README.md
ontoProc -- an R package for working with multiple biomedical ontologies Includes the ctmarks app for examining cell types through ontological characterization ![](https://github.com/vjcitn/ontoProc/raw/main/ctmarks.png) We also consider how to produce OBO stanzas for expanding existing ontologies ![](https://github.com/vjcitn/ontoProc/raw/main/ldfToTerm.png) With this we can formally describe novel cell types (CL:X01 is an 'extended CL tag') ![](https://github.com/vjcitn/ontoProc/raw/main/GRIK3table.png)