Bioconductor Code: omicRexposome

Graph of omicRexposome

8e15ee9 (origin/RELEASE_3_18, RELEASE_3_18) remove dependency by Xavier Escribà-Montagut <xavier.escriba@isglobal.org> 2023-11-04 12:09:08 +0100;
ae563bc bump version by Xavier Escribà-Montagut <xavier.escriba@isglobal.org> 2023-11-02 15:39:47 +0100;
327166f update dependencies by Xavier Escribà-Montagut <xavier.escriba@isglobal.org> 2023-11-02 15:39:36 +0100;
e6d1894 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:00:12 -0400;
aa041fa bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:00:12 -0400;
1554875 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:57:01 -0400;
1f75c6b (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:57:01 -0400;
c36ffc1 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:28 -0400;
351df06 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:28 -0400;
4144bfd bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:43:52 +0000;
2694d60 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:43:52 +0000;
92561ba Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-21 00:39:38 -0500;
11f1930 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:38:39 +0000;
9b3cd50 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:38:39 +0000;
8e929bc bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:30:50 +0000;
f490520 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:30:50 +0000;
6c628e8 maintainer by Xavier Escribà Montagut <xavier.escriba@isglobal.org> 2021-01-22 17:22:43 +0100;
8fef5d9 (origin/RELEASE_3_12, RELEASE_3_12) new maintainer by Xavier Escribà Montagut <xavier.escriba@isglobal.org> 2021-01-22 17:15:14 +0100;
e95b0d3 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:28:15 -0400;
3f9ad44 bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:28:15 -0400;
97c9e52 Undeprecate by Lori Shepherd <lori.shepherd@roswellpark.org> 2020-09-04 12:00:25 -0400;
a2b03c3 Deprecate by lshep <lori.shepherd@roswellpark.org> 2020-06-08 10:27:12 -0400;
68666af bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:10:57 +0000;
de60bda (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:10:57 +0000;
fba4293 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:29 -0400;
b57ede7 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:49 -0400;
b8842d6 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:15:13 -0400;
a6d6666 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:09 -0400;
57fcb11 (origin/RELEASE_3_8, RELEASE_3_8) Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:42:09 -0500;
816cb8a Add ImmunoOncology biocViews term by Kayla-Morrell <kayla.morrell@roswellpark.org> 2019-01-04 13:42:00 -0500;
3221d39 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:38 -0400;
fca410b bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:06 -0400;
9d4b244 replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:53:26 -0400;
bc89fd7 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
c1ec477 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:48 -0400;
730013a (origin/RELEASE_3_6, RELEASE_3_6) use brgedata rather than BRGEdata by Martin Morgan <martin.morgan@roswellpark.org> 2017-12-22 08:41:41 -0500;
e880845 use brgedata rather than BRGEdata by Martin Morgan <martin.morgan@roswellpark.org> 2017-12-22 08:41:41 -0500;
5a6ec4c bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:33 -0400;
a37b4bf bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:58 -0400;
ba75623 Updated SVA by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-09-28 14:22:39 +0200;
fab7171 Updated `association` to also include SVA pipeline by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-09-27 11:53:27 +0200;
ce17dbd solved bug when null model selected for association. by carleshf <carles.hernandez@isglobal.org> 2017-08-19 23:40:49 +0200;
7dbb85f Version bump. by carleshf <carles.hernandez@isglobal.org> 2017-07-17 15:52:39 +0200;
8f7f675 Updated omicRexposome - documentation, examples and checking. by carleshf <carles.hernandez@isglobal.org> 2017-07-17 14:43:58 +0200;
86bd1e9 Updated plotIntegration + vignette by carleshf <carles.hernandez@isglobal.org> 2017-07-13 16:00:34 +0200;
51c9b17 Solved type in crossomics. by carleshf <carles.hernandez@isglobal.org> 2017-07-11 19:01:29 +0200;
9c166cd Solved bug in plotAssociation. Updated vignette. Solved problems in corssomics. Readjusted tableHits, table Lambda, plotHits and plotLambda. by carleshf <carles.hernandez@isglobal.org> 2017-07-11 18:48:33 +0200;
b0d8567 Updated 'crossomics'. by carleshf <carles.hernandez@isglobal.org> 2017-07-11 17:12:40 +0200;
c5ce65b Update helps. Updated vignette. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-06-21 14:00:50 +0200;
079c1ec ResultSet moved to MultiDataSet. Updated from sva to SmartSVA. MEthylation pipeline needs test. by carleshf <carles.hernandez@gmail.com> 2017-06-21 10:00:33 +0200;
4ef8eca General update of 'omicRexposome', included 'MultiDataSet'. Created 'association'. 'crossomics' needs upate and validation. by kuragari <kuragari@localhost.localdomain> 2017-06-16 17:52:39 +0200;
96aa526 Added 'association' with the aim to substitute 'assocES'. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-06-14 23:16:03 +0200;
4346034 Updated 'exp_r' data. Moved 'volcano_plot' to 'rexposome'. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-06-14 12:59:24 +0200;
c058ce7 Added 'association' method for 'MultiDataSet' objects. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-06-14 12:58:27 +0200;
cc3fa22 Moved volcano plot from omicRexposome to rexposome. by carleshf <carles.hernandez@isglobal.org> 2017-06-04 10:51:03 +0200;
dd20a9e Added 'show.effect'. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-05-15 19:45:23 +0200;
4ef2ed4 Full update of NAMESPACE by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 21:23:19 +0200;
0e92ac3 Validated warnings. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 20:51:42 +0200;
30cd270 Improved example in 'assocES' by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 20:29:18 +0200;
8e5467b Update examples by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 20:22:53 +0200;
92c55e1 Updated doc. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 17:58:09 +0200;
b2bca28 Test BioC issue by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 15:38:06 +0200;
0f30793 Update DESCRIPTION by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 14:09:46 +0200;
2608d1c Revert "Updated R version + version bump" by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 14:06:58 +0200;
d831651 Updated R version + version bump by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-04-19 14:07:39 +0200;
a8ef323 Updated plotIntegration by carleshf <carles.hernandez@isglobal.org> 2017-04-03 10:34:09 +0200;
8595211 Added HTML. by carleshf <carles.hernandez@isglobal.org> 2017-03-31 21:40:23 +0200;
80eb99c Updated documentation. Re-implementation of one of the plots from 'plotIntegration'. Updated vignette. by carleshf <chernandez@ISGLOBAL.LAN> 2017-03-31 21:24:28 +0200;
60f5190 Updated documentation - added examples. Updated vignette. by carleshf <chernandez@ISGLOBAL.LAN> 2017-03-31 16:49:44 +0200;
bbffa4b Reorder. by carleshf <carles.hernandez@isglobal.org> 2017-03-31 12:53:46 +0200;
6384630 Updated aestetics by carleshf <carles.hernandez@isglobal.org> 2017-03-30 10:31:04 +0200;
ac3dafa Updated R version to be used in ISGlobal by carleshf <carles.hernandez@isglobal.org> 2017-03-29 16:27:42 +0200;
d6d5744 Removed 'MultiDataSet' methods. Updated 'crossomics' with 'MultiCCA' from 'PMA'. Updated 'plotIntegration'. by carleshf <carles.hernandez@isglobal.org> 2017-03-29 01:30:19 +0200;
a135a43 'crossomics' function using 'MultiCCA' method from 'PMA' is working. by carleshf <carles.hernandez@isglobal.org> 2017-03-28 23:12:28 +0200;
bcaff11 Created 'assocES' by carleshf <carles.hernandez@isglobal.org> 2017-03-26 23:11:03 +0200;
026c7b9 Updated 'corssomics'. by carleshf <carles.hernandez@isglobal.org> 2017-03-26 19:06:17 +0200;
eb5af5f Updated 'assosGE' and 'assocME', added 'crossomics' by carleshf <carles.hernandez@isglobal.org> 2017-03-26 15:40:32 +0200;
5a04e7c Updated vignette + assocGE + assocME by carleshf <carles.hernandez@isglobal.org> 2017-03-24 17:56:35 +0100;
d2a7f42 Added methods to 'MultiDataSet' by carleshf <carles.hernandez@isglobal.org> 2017-03-24 15:13:35 +0100;
17742ba Added 'assocPRT' and upated to new codign by carleshf <carles.hernandez@isglobal.org> 2017-03-23 12:25:54 +0100;
7d15966 Updated way to sabe the results. by carleshf <carles.hernandez@isglobal.org> 2017-03-20 23:02:37 +0100;
030a0a8 Added 'plotAssociation' for methy by carleshf <carles.hernandez@isglobal.org> 2017-03-20 22:16:41 +0100;
6270778 .. by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-03-20 18:22:16 +0100;
54c92b5 Updated import methods by carleshf <carles.hernandez@isglobal.org> 2017-03-19 17:14:28 +0100;
33dd09f Export 'topTable'. by carleshf <carles.hernandez@isglobal.org> 2017-03-19 16:37:14 +0100;
2909c47 Export 'topTable'. by carleshf <carles.hernandez@isglobal.org> 2017-03-19 16:36:31 +0100;
e854ad1 Changed from 'extrat' to 'topTable'. by carleshf <carles.hernandez@isglobal.org> 2017-03-19 16:34:26 +0100;
5b3cb6b Added 'extract' method for 'ResultSet'. by carleshf <carles.hernandez@isglobal.org> 2017-03-19 16:24:52 +0100;
8ba0ee6 Added QQ plot for GE results by carleshf <carles.hernandez@isglobal.org> 2017-03-19 14:07:13 +0100;
1b17820 Added 'show' for 'ResultSet'. by carleshf <carles.hernandez@isglobal.org> 2017-03-19 13:57:17 +0100;
e37bb7f Added internal .create_p by carleshf <carles.hernandez@isglobal.org> 2017-03-19 12:50:05 +0100;
004d3ba reorganization - needs more work by Carles Hernandez-Ferrer <kuragari.ch@gmail.com> 2017-03-17 18:16:34 +0100;
50422aa First commit after restructuration. by carleshf <carles.hernandez@isglobal.org> 2017-03-09 18:17:22 +0100;
5ff3755 Initial commit by Bioinformatic Research Group in Epidemiology (BRGE) <juanr.gonzalez@isglobal.org> 2017-03-07 10:18:46 +0100;