[](https://travis-ci.org/antagomir/netresponse)
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netresponse
===========
Tools for functional network analysis (follow links for references):
* [netresponse](http://bioinformatics.oxfordjournals.org/content/26/21/2713)
discover context-specific activation patterns in interaction
networks
* [Interaction Component Model
ICMg](http://www.biomedcentral.com/1752-0509/4/4) to discover
network modules. Can be supervised by functional information of the
network.
For installation and usage, check the [tutorial page](vignettes/NetResponse.md).
<!--_Bioinformatics_ 2011. {[Abstract](http://bioinformatics.oxfordjournals.org/content/26/21/2713) | [Preprint pdf](http://www.roihu.info/publications/preprints/Lahti10bioinf-preprint.pdf)}-->
### Support
You are welcome to:
* [submit suggestions and bug reports](https://github.com/antagomir/netresponse/issues)
* [send a pull request](https://github.com/antagomir/netresponse/)
* ping antagomir at IRCnet or FreeNode
### Authors
Maintainer: [Leo Lahti](http://www.iki.fi/Leo.Lahti)
Contributors: Olli-Pekka Huovilainen, Antonio Gusmao, Juuso Parkkinen
Acknowledgements: This program is partially based on the
[AIVGA](http://www.cis.hut.fi/projects/ivga/) Agglomerative
Independent Variable Group Analysis source code (v. 1.0) Copyright (C)
2001-2007 Esa Alhoniemi, Antti Honkela, Krista Lagus, Jeremias Seppa,
Harri Valpola, and Paul Wagner.
[Matlab
implementation](http://www.cis.hut.fi/projects/mi/software/NetResponse)
is also available but not supported.
