[](https://travis-ci.org/antagomir/netresponse) <!--[](http://waffle.io/antagomir/netresponse)--> <!--[](https://github.com/rOpenGov/sorvi)--> netresponse =========== Tools for functional network analysis (follow links for references): * [netresponse](http://bioinformatics.oxfordjournals.org/content/26/21/2713) discover context-specific activation patterns in interaction networks * [Interaction Component Model ICMg](http://www.biomedcentral.com/1752-0509/4/4) to discover network modules. Can be supervised by functional information of the network. For installation and usage, check the [tutorial page](vignettes/NetResponse.md). <!--_Bioinformatics_ 2011. {[Abstract](http://bioinformatics.oxfordjournals.org/content/26/21/2713) | [Preprint pdf](http://www.roihu.info/publications/preprints/Lahti10bioinf-preprint.pdf)}--> ### Support You are welcome to: * [submit suggestions and bug reports](https://github.com/antagomir/netresponse/issues) * [send a pull request](https://github.com/antagomir/netresponse/) * ping antagomir at IRCnet or FreeNode ### Authors Maintainer: [Leo Lahti](http://www.iki.fi/Leo.Lahti) Contributors: Olli-Pekka Huovilainen, Antonio Gusmao, Juuso Parkkinen Acknowledgements: This program is partially based on the [AIVGA](http://www.cis.hut.fi/projects/ivga/) Agglomerative Independent Variable Group Analysis source code (v. 1.0) Copyright (C) 2001-2007 Esa Alhoniemi, Antti Honkela, Krista Lagus, Jeremias Seppa, Harri Valpola, and Paul Wagner. [Matlab implementation](http://www.cis.hut.fi/projects/mi/software/NetResponse) is also available but not supported.