Package: nempi
Type: Package
Title: Inferring unobserved perturbations from gene expression data
Version: 1.7.0
Authors@R: person("Martin", "Pirkl", 
    email = "martinpirkl@yahoo.de",
    role = c("aut", "cre"))
Depends: R (>= 4.1), mnem
Description: Takes as input an incomplete perturbation 
    profile and differential gene expression in log odds and 
    infers unobserved perturbations and augments observed 
    ones. The inference is done by iteratively inferring a 
    network from the perturbations and inferring perturbations 
    from the network. The network inference is done by 
    Nested Effects Models.
License: GPL-3
Encoding: UTF-8
LazyData: true
biocViews: Software, GeneExpression, DifferentialExpression, 
    DifferentialMethylation, GeneSignaling, Pathways, Network, 
    Classification, NeuralNetwork, NetworkInference, ATACSeq,
    DNASeq, RNASeq, PooledScreens, CRISPR, SingleCell,
    SystemsBiology
Imports: e1071, nnet, randomForest, naturalsort, 
    graphics, stats, utils, matrixStats, epiNEM
VignetteBuilder: knitr
Suggests: knitr, BiocGenerics, rmarkdown, RUnit
BugReports: https://github.com/cbg-ethz/nempi/issues
URL: https://github.com/cbg-ethz/nempi/
RoxygenNote: 7.1.1