Bioconductor Code: mzR

Graph of mzR

40004fe59 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:47:39 -0400;
1764563bf (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:47:39 -0400;
cbc98f1c4 (origin/RELEASE_3_17, RELEASE_3_17) Bump version and NEWS. Thanks to Christian Iseli for the PR! Closes <a href="#282">#282</a> by Steffen Neumann <sneumann@ipb-halle.de> 2023-06-19 13:52:27 +0200;
edf636b12 Fix build on Fedora 38 / R-4.3.0 by Christian Iseli <christian.iseli@epfl.ch> 2023-04-25 23:08:12 +0200;
a9788d43f Bump version and NEWS. Thanks to Christian Iseli for the PR! Closes <a href="#282">#282</a> by Steffen Neumann <sneumann@ipb-halle.de> 2023-04-28 11:13:03 +0200;
fc15a3c7c Merge pull request <a href="#283">#283</a> from c4chris/devel by Steffen Neumann <sneumann@ipb-halle.de> 2023-04-28 11:10:25 +0200;
65feb5f28 Update github action r-lib by Steffen Neumann <sneumann@ipb-halle.de> 2023-04-27 16:22:45 +0200;
127ddca1c Bump bioc for CI by Steffen Neumann <sneumann@ipb-halle.de> 2023-04-27 16:19:18 +0200;
30f975859 Fix build on Fedora 38 / R-4.3.0 by Christian Iseli <christian.iseli@epfl.ch> 2023-04-25 23:08:12 +0200;
e1deaeb8c bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:20:39 -0400;
14ccc37ab bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:20:39 -0400;
038f68d6c Merge pull request <a href="#279">#279</a> from sneumann/fix/issue278 by Steffen Neumann <sneumann@ipb-halle.de> 2023-04-06 09:36:29 +0200;
12513b6cf Update to newer pwiz CV handling code by Steffen Neumann <sneumann@ipb-halle.de> 2023-04-06 08:55:37 +0200;
78fc419e8 Updating the CV by Steffen Neumann <sneumann@ipb-halle.de> 2023-04-05 14:44:04 +0200;
f2439b3d9 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:10 -0400;
ef57d5920 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:10 -0400;
48029f236 bump version by Steffen Neumann <sneumann@ipb-halle.de> 2022-05-24 10:45:03 +0200;
24f51a7d9 Merge branch 'master' of git.bioconductor.org:packages/mzR by Steffen Neumann <sneumann@ipb-halle.de> 2022-05-24 10:43:38 +0200;
cfc7d73e4 Merge pull request <a href="#270">#270</a> from jorainer/issue_269 by Steffen Neumann <sneumann@ipb-halle.de> 2022-05-24 10:42:57 +0200;
a0a9a8ea6 fix: read full spectra data in get3DMap (issue #269) by jorainer <johannes.rainer@gmail.com> 2022-05-24 09:28:04 +0200;
0b19fcb4f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:08:40 +0000;
563ae755c (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:08:40 +0000;
4745773a6 Merge pull request <a href="#267">#267</a> from jorainer/master by Steffen Neumann <sneumann@ipb-halle.de> 2022-04-25 10:18:26 +0200;
3b091f3a3 fix: mzML export by jorainer <johannes.rainer@gmail.com> 2022-04-22 15:50:18 +0200;
88b1c19b0 Merge pull request <a href="#265">#265</a> from jorainer/master by Steffen Neumann <sneumann@ipb-halle.de> 2022-03-20 19:20:40 +0100;
0e6e52065 merge by jorainer <johannes.rainer@gmail.com> 2022-03-18 14:47:56 +0100;
c2ab2b8c6 feat: pwiz returns peak matrices with column names by jorainer <johannes.rainer@gmail.com> 2022-03-18 11:38:45 +0100;
68e17202e re-apply clang compile fix after pwiz upgrade, closes <a href="#263">#263</a> by Steffen Neumann <sneumann@ipb-halle.de> 2022-03-14 11:47:04 +0100;
34f92398d Add minimum R version: Versioned LinkingTo is only usable in R >= 3.0.2 by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-26 21:20:10 +0100;
45834cf05 Fix Warning from Wparentheses by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-26 21:17:58 +0100;
71c792d7c Remove stray file also removed from boost upstream by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-26 21:11:13 +0100;
458704d68 Merge pull request <a href="#253">#253</a> from sneumann/feature/updatePwiz_3_0_21263 by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-25 17:51:47 +0100;
f9a442387 Merge branch 'master' into feature/updatePwiz_3_0_21263 by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-25 17:30:31 +0100;
e43067df3 Cleanup ZLIB from Makevars, enable other arches and disable error on warning in GitHub action, update DESCRIPTION and NEWS by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-25 10:42:19 +0100;
9b60d7720 Fix compile errors by win_check() by uly55e5 <uly55e5@web.de> 2022-01-24 18:18:46 +0100;
d51b66898 fixed iostream.cpp by uly55e5 <uly55e5@web.de> 2022-01-19 01:30:42 +0100;
d2f5476d8 Add iostream.cpp by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-18 12:59:27 +0100;
d49b824da Add winthreads, adopt to changed location of iostream.cpp by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-18 12:27:30 +0100;
54422cf97 Adding algo by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-18 11:55:21 +0100;
d8aa09b2f Add more headers for unordered by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-18 11:29:09 +0100;
3cb3c128c Add more headers by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-18 10:43:12 +0100;
11faef7a9 Adding IPC detail on windows by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-18 09:33:38 +0100;
828c534b8 Adding stream on windows by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-17 14:33:38 +0100;
3e92e8122 Add spinlock on windows by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-17 14:07:22 +0100;
e07abc799 Fix path of windows includes by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-17 13:28:34 +0100;
a4600bb32 Add IPB on windows by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-17 13:00:22 +0100;
bdfb826b0 Move disabling INSTALL patches by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-14 10:04:24 +0100;
4c7968712 Fix env var against install time patches again by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-14 09:22:15 +0100;
60306fb03 Fix Avoid install time patching in github actions by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-14 08:05:56 +0100;
8af49c07d Avoid install time patching in github actions by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-14 07:34:11 +0100;
0132be366 avoid use of find in Makevars, breaking windows builds by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-13 22:44:30 +0100;
9daef8f9e Cleanup in build files by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-13 21:21:45 +0100;
3d7449c09 Merge remote-tracking branch 'drauh/feature/updatePwiz_3_0_21263' into feature/updatePwiz_3_0_21263 by Steffen Neumann <sneumann@ipb-halle.de> 2022-01-13 09:17:12 +0100;
942bd2aea Fix problems with Filesystem.cpp from pwiz <a href="#253">#253</a> by uly55e5 <uly55e5@web.de> 2021-12-09 08:53:32 +0100;
87322ebb0 Change DESCRIPTION to work with devtools::check_win() by uly55e5 <uly55e5@web.de> 2021-12-09 08:51:46 +0100;
fbfaeb1a1 don't install dependencies originally added for xcms github action by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 19:51:13 +0100;
a3475bfd5 Revert d76a1fe3601ffdcf4b8a30a535a1e2a442f894e2 and change preprocessor check instead by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 18:52:21 +0100;
86b5dcddc Add some mac stuff by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 18:37:38 +0100;
f8316567b Adding more win stuff by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 17:17:55 +0100;
a0ee32b05 Adding more win stuff by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 14:24:19 +0100;
d76a1fe36 Explicitly and manually define _MSC_VER on Windows by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 13:35:29 +0100;
1aeecc648 Adding more win stuff by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 12:11:29 +0100;
17ebe8ec2 Adding more win stuff by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-27 11:23:50 +0100;
d9219a9ac Adding winapi by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-26 23:31:46 +0100;
cfe0e67aa Add github actions by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-26 22:38:42 +0100;
6f8ec1746 Merge pull request <a href="#254">#254</a> from jorainer/feature/updatePwiz_3_0_21263 by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-26 18:00:54 +0100;
ee9c964e8 refactor: header always returns a `data.frame` (PR #253) by jorainer <johannes.rainer@gmail.com> 2021-11-25 09:27:02 +0100;
f95a952bc Merge branch 'master' into feature/updatePwiz_3_0_21263 by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-24 17:31:22 +0100;
3271d295a Fix DESCRIPTION by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-23 23:15:45 +0100;
899e9e0c6 Add News by Steffen Neumann <sneumann@ipb-halle.de> 2021-11-20 12:19:02 +0100;
cf900d05a Fix version number after release by Steffen Neumann <sneumann@ipb-halle.de> 2021-10-27 14:39:10 +0200;
5b6d251ad Fix merge conflict on Versions after BioC release by Steffen Neumann <sneumann@ipb-halle.de> 2021-10-27 14:28:00 +0200;
4c03c4870 Use pwiz to extract acquisitionNum from scanId by jorainer <johannes.rainer@gmail.com> 2021-10-27 07:52:05 +0200;
93b51a7b9 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:59 +0000;
bee7d6fb5 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 15:59:59 +0000;
2aed7135f refactor: patially rewrite code to exctract header info by jorainer <johannes.rainer@gmail.com> 2021-10-25 10:58:52 +0200;
7ff9196cd remove (hopefully) unused directories by Steffen Neumann <sneumann@ipb-halle.de> 2021-09-23 17:21:20 +0200;
72fef926d Updating pwiz to 3_0_21263 by Steffen Neumann <sneumann@ipb-halle.de> 2021-09-23 14:34:25 +0200;
d6c9b8db0 Removed old pwiz code by Steffen Neumann <sneumann@ipb-halle.de> 2021-09-22 12:40:31 +0200;
5fbb9facf Merge pull request <a href="#251">#251</a> from jorainer/without_ramp by Steffen Neumann <sneumann@ipb-halle.de> 2021-09-20 20:55:47 +0200;
e3f79ff5f Remove Ramp backend with dependencies by jorainer <johannes.rainer@gmail.com> 2021-09-20 14:19:56 +0200;
5a5c15c5e (origin/RELEASE_3_13, RELEASE_3_13) add missing atomic_count_sync.hpp for M1 by Laurent Gatto <laurent.gatto@uclouvain.be> 2021-06-19 06:09:16 +0200;
60bf78693 misc + version update by Laurent Gatto <laurent.gatto@uclouvain.be> 2021-06-18 18:37:31 +0200;
d1bfdcc6d Merge pull request <a href="#248">#248</a> from vjcitn/vince_M1_file by Laurent Gatto <laurent.gatto@uclouvain.be> 2021-06-18 17:35:44 +0200;
dbc53ee30 needed on M1 mac by Vince Carey <stvjc@channing.harvard.edu> 2021-06-18 09:41:18 -0400;
b1b203ad6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:49:34 +0000;
537e62479 bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:49:34 +0000;
b73baad17 Merge pull request <a href="#246">#246</a> from sneumann/fix/issue244 by Steffen Neumann <sneumann@ipb-halle.de> 2021-05-08 16:11:28 +0200;
4c81caf25 Bump version after previous commit & fix, closes <a href="#244">#244</a> by Steffen Neumann <sneumann@ipb-halle.de> 2021-05-08 16:06:08 +0200;
d028ffbe3 Fix for clang-11 compile error courtesy Kurt Hornik by Steffen Neumann <sneumann@ipb-halle.de> 2021-05-08 09:43:30 +0200;
e29444888 Add rmarkdown dependency to fix build error by Steffen Neumann <sneumann@ipb-halle.de> 2021-04-17 16:44:00 +0200;
022ea5553 Merge pull request <a href="#240">#240</a> from jorainer/master by Steffen Neumann <sneumann@ipb-halle.de> 2021-02-08 14:27:25 +0100;
6ac854dd0 fix another column by jorainer <johannes.rainer@gmail.com> 2021-02-08 13:29:16 +0100;
cc0f816e1 fix: ensure columns are returned in correct data type by jorainer <johannes.rainer@gmail.com> 2021-02-08 13:19:25 +0100;
373a390e2 Merge pull request <a href="#239">#239</a> from jorainer/master by Laurent Gatto <laurent.gatto@uclouvain.be> 2021-02-03 14:13:32 +0100;
184825745 Fix polarity being a `integer` for CDF by jorainer <johannes.rainer@gmail.com> 2021-02-03 13:08:52 +0100;
f56e0c92a fix: ensure header returns the same columns for all backends by jorainer <johannes.rainer@gmail.com> 2021-02-02 19:46:29 +0100;
09d5907da Bump version to trigger new build and use latest Rcpp by Laurent Gatto <laurent.gatto@uclouvain.be> 2020-11-18 14:41:52 +0100;
e1d4de876 (origin/RELEASE_3_12, RELEASE_3_12) Bump version to trigger new build and use latest Rcpp by Laurent Gatto <laurent.gatto@uclouvain.be> 2020-11-18 14:39:00 +0100;
19d69eb0e bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:42:32 -0400;