Name Mode Size
..
Base64.cpp 100644 3 kb
Base64.hpp 100644 2 kb
Base64Test.cpp 100644 4 kb
BinaryData.cpp 100644 14 kb
BinaryData.hpp 100644 12 kb
BinaryDataTest.cpp 100644 11 kb
COMInitializer.cpp 100644 2 kb
COMInitializer.hpp 100644 2 kb
COMInitializerTest.cpp 100644 2 kb
CharIndexedVector.hpp 100644 6 kb
ClickwrapPrompter.cpp 100644 5 kb
ClickwrapPrompter.hpp 100644 1 kb
ClickwrapPrompterTest.cpp 100644 1 kb
Container.hpp 100644 4 kb
DateTime.hpp 100755 5 kb
DateTimeTest.cpp 100644 10 kb
Environment.hpp 100644 2 kb
Exception.hpp 100644 4 kb
ExceptionTest.cpp 100644 1 kb
Export.hpp 100644 1 kb
FailTest.cpp 100644 1 kb
Filesystem.cpp 100644 23 kb
Filesystem.hpp 100644 5 kb
FilesystemTest.cpp 100644 11 kb
Image.cpp 100644 8 kb
Image.hpp 100644 3 kb
IntegerSet.cpp 100644 8 kb
IntegerSet.hpp 100644 5 kb
IntegerSetTest.cpp 100644 6 kb
IterationListener.cpp 100644 5 kb
IterationListener.hpp 100644 3 kb
IterationListenerTest.cpp 100644 7 kb
Jamfile.jam 100644 5 kb
MSIHandler.cpp 100644 3 kb
MSIHandler.hpp 100644 2 kb
Once.hpp 100644 1 kb
SHA1.cpp 100644 9 kb
SHA1.h 100644 7 kb
SHA1Calculator.cpp 100644 4 kb
SHA1Calculator.hpp 100644 2 kb
SHA1CalculatorTest.cpp 100644 4 kb
SHA1_ostream.hpp 100644 3 kb
SHA1_ostream_test.cpp 100644 3 kb
Singleton.hpp 100644 1 kb
Std.hpp 100644 2 kb
Stream.hpp 100644 2 kb
String.cpp 100644 5 kb
String.hpp 100644 6 kb
TabReader.cpp 100644 7 kb
TabReader.hpp 100644 3 kb
TabReaderTest.cpp 100644 3 kb
Timer.hpp 100644 1 kb
VendorReaderTestHarness.cpp 100644 37 kb
VendorReaderTestHarness.hpp 100644 4 kb
almost_equal.hpp 100644 1 kb
almost_equal_test.cpp 100644 2 kb
automation_vector.cpp 100644 5 kb
automation_vector.h 100644 26 kb
automation_vector_test.cpp 100644 6 kb
cpp_cli_utilities.hpp 100644 9 kb
endian.hpp 100644 3 kb
endian_test.cpp 100644 2 kb
mru_list.hpp 100644 4 kb
mru_list_test.cpp 100644 2 kb
optimized_lexical_cast.hpp 100644 10 kb
pinned_gcroot.h 100644 5 kb
random_access_compressed_ifstream.cpp 100644 48 kb
random_access_compressed_ifstream.hpp 100644 4 kb
sha1calc.cpp 100644 1 kb
shared_map.hpp 100644 11 kb
sort_together.hpp 100644 3 kb
unit.hpp 100644 9 kb
virtual_map.hpp 100644 11 kb
README.md
# Continuous integration The mzR project master branch is subjected to CI using travis: [![Build Status](https://travis-ci.org/sneumann/mzR.svg?branch=master)](https://travis-ci.org/sneumann/mzR) The devel branch is tested on multiple architectures by the BioC build farm: http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/ # Installation ## Installation on macOS If you install from source, you first need to install the netCDF headers and libraries: `brew install netcdf`, and then instal mzR the BioC way via: ``` if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("mzR", suppressUpdates = TRUE) ``` ## Installation on Linux We are not shipping the full set of boost headers due to size restrictions. This *might* cause compilation failure due to missing files. We have tested several OS and compiler build environments successfully, please report any compilation failures at https://github.com/sneumann/mzR/issues and we'll add the missing files. mzR-2.9.1 with boost-1.59.0 has been tested on the following compilers: On the BioC build farm (http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/) * malbec2 (Ubuntu 16.04.1, gcc-5.4.0) * tokay2 (Windows Server 2012 R2, MinGW-W64-4.9.3) * Failling oaxaca (Apple clang 3.5svn / 600.0.57) Also on: * Debian stretch/sid (gcc-5.4.0) * Ubuntu 16.04 (clang 3.8.0) * Ubuntu 16.04 (gcc-5.4.0) * Ubuntu 14.04 (gcc-4.8.2) * Ubuntu 12.04 (gcc-4.6.3) # Contributions Please read the [contributions guide and code of conduct](./CONTRIBUTIONS.md).