Name Mode Size
..
DefaultReaderList.cpp 100644 13 kb
DefaultReaderList.hpp 100644 1 kb
DelimReader.cpp 100644 18 kb
DelimReader.hpp 100644 2 kb
DelimWriter.cpp 100644 5 kb
DelimWriter.hpp 100644 2 kb
Diff.cpp 100644 34 kb
Diff.hpp 100644 11 kb
DiffTest.cpp 100644 39 kb
ExtendedReadTest.cpp 100644 2 kb
IO.cpp 100644 147 kb
IO.hpp 100644 10 kb
IOTest.cpp 100644 20 kb
IdentData.cpp 100644 35 kb
IdentData.hpp 100644 30 kb
IdentDataFile.cpp 100644 6 kb
IdentDataFile.hpp 100644 3 kb
IdentDataTest.cpp 100644 21 kb
Jamfile.jam 100644 6 kb
KwCVMap.cpp 100644 7 kb
KwCVMap.hpp 100644 4 kb
KwCVMapTest.cpp 100644 5 kb
MascotReader.cpp 100644 49 kb
MascotReader.hpp 100644 2 kb
MascotReaderTest.cpp 100644 2 kb
MzidPredicates.hpp 100644 3 kb
Pep2MzIdent.cpp 100644 63 kb
Pep2MzIdent.hpp 100644 3 kb
Pep2MzIdentTest.cpp 100644 4 kb
Reader.cpp 100644 5 kb
Reader.hpp 100644 8 kb
ReaderTest.cpp 100644 5 kb
References.cpp 100644 15 kb
References.hpp 100644 2 kb
ReferencesTest.cpp 100644 8 kb
Serializer_Text.cpp 100644 16 kb
Serializer_Text.hpp 100644 2 kb
Serializer_Text_Test.cpp 100644 2 kb
Serializer_mzid.cpp 100644 2 kb
Serializer_mzid.hpp 100644 2 kb
Serializer_mzid_Test.cpp 100644 2 kb
Serializer_pepXML.cpp 100644 97 kb
Serializer_pepXML.hpp 100644 3 kb
Serializer_pepXML_Test.cpp 100644 17 kb
Serializer_protXML.cpp 100644 22 kb
Serializer_protXML.hpp 100644 2 kb
Serializer_protXML_Test.cpp 100644 4 kb
TextWriter.hpp 100644 29 kb
Version.cpp 100644 1 kb
Version.hpp 100644 1 kb
examples.cpp 100644 41 kb
examples.hpp 100644 1 kb
README.md
# Continuous integration The mzR project master branch is subjected to CI using travis: [![Build Status](https://travis-ci.org/sneumann/mzR.svg?branch=master)](https://travis-ci.org/sneumann/mzR) The devel branch is tested on multiple architectures by the BioC build farm: http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/ # Installation ## Installation on macOS If you install from source, you first need to install the netCDF headers and libraries: `brew install netcdf`, and then instal mzR the BioC way via: ``` if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("mzR", suppressUpdates = TRUE) ``` ## Installation on Linux We are not shipping the full set of boost headers due to size restrictions. This *might* cause compilation failure due to missing files. We have tested several OS and compiler build environments successfully, please report any compilation failures at https://github.com/sneumann/mzR/issues and we'll add the missing files. mzR-2.9.1 with boost-1.59.0 has been tested on the following compilers: On the BioC build farm (http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/) * malbec2 (Ubuntu 16.04.1, gcc-5.4.0) * tokay2 (Windows Server 2012 R2, MinGW-W64-4.9.3) * Failling oaxaca (Apple clang 3.5svn / 600.0.57) Also on: * Debian stretch/sid (gcc-5.4.0) * Ubuntu 16.04 (clang 3.8.0) * Ubuntu 16.04 (gcc-5.4.0) * Ubuntu 14.04 (gcc-4.8.2) * Ubuntu 12.04 (gcc-4.6.3) # Contributions Please read the [contributions guide and code of conduct](./CONTRIBUTIONS.md).