Name Mode Size
..
Jamfile.jam 100644 9 kb
MS2Deisotoper.cpp 100644 13 kb
MS2Deisotoper.hpp 100644 2 kb
MS2DeisotoperTest.cpp 100644 5 kb
MS2NoiseFilter.cpp 100644 8 kb
MS2NoiseFilter.hpp 100644 2 kb
PrecursorMassFilter.cpp 100644 9 kb
PrecursorMassFilter.hpp 100644 5 kb
PrecursorRecalculator.hpp 100644 2 kb
PrecursorRecalculatorDefault.cpp 100644 4 kb
PrecursorRecalculatorDefault.hpp 100644 2 kb
PrecursorRecalculatorDefaultTest.cpp 100644 20 kb
SpectrumListFactory.cpp 100644 83 kb
SpectrumListFactory.hpp 100644 2 kb
SpectrumListFactoryTest.cpp 100644 27 kb
SpectrumList_3D.cpp 100644 3 kb
SpectrumList_3D.hpp 100644 2 kb
SpectrumList_3D_Test.cpp 100644 13 kb
SpectrumList_ChargeFromIsotope.cpp 100644 48 kb
SpectrumList_ChargeFromIsotope.hpp 100644 4 kb
SpectrumList_ChargeFromIsotopeTest.cpp 100644 55 kb
SpectrumList_ChargeStateCalculator.cpp 100644 966 kb
SpectrumList_ChargeStateCalculator.hpp 100644 2 kb
SpectrumList_ChargeStateCalculatorTest.cpp 100644 163 kb
SpectrumList_Demux.cpp 100644 23 kb
SpectrumList_Demux.hpp 100644 5 kb
SpectrumList_DemuxTest.cpp 100644 17 kb
SpectrumList_DiaUmpire.cpp 100644 4 kb
SpectrumList_DiaUmpire.hpp 100644 2 kb
SpectrumList_DiaUmpireTest.cpp 100644 7 kb
SpectrumList_Filter.cpp 100644 22 kb
SpectrumList_Filter.hpp 100644 13 kb
SpectrumList_FilterTest.cpp 100644 25 kb
SpectrumList_IonMobility.cpp 100644 10 kb
SpectrumList_IonMobility.hpp 100644 3 kb
SpectrumList_IonMobility_Test.cpp 100644 8 kb
SpectrumList_LockmassRefiner.cpp 100644 3 kb
SpectrumList_LockmassRefiner.hpp 100644 2 kb
SpectrumList_LockmassRefinerTest.cpp 100644 3 kb
SpectrumList_MZRefiner.cpp 100644 105 kb
SpectrumList_MZRefiner.hpp 100644 4 kb
SpectrumList_MZRefinerTest.cpp 100644 8 kb
SpectrumList_MZWindow.cpp 100644 2 kb
SpectrumList_MZWindow.hpp 100644 2 kb
SpectrumList_MZWindowTest.cpp 100644 3 kb
SpectrumList_MetadataFixer.cpp 100644 3 kb
SpectrumList_MetadataFixer.hpp 100644 1 kb
SpectrumList_MetadataFixerTest.cpp 100644 4 kb
SpectrumList_PeakFilter.cpp 100644 6 kb
SpectrumList_PeakFilter.hpp 100644 2 kb
SpectrumList_PeakFilterTest.cpp 100644 114 kb
SpectrumList_PeakPicker.cpp 100644 12 kb
SpectrumList_PeakPicker.hpp 100644 3 kb
SpectrumList_PrecursorRecalculator.cpp 100644 8 kb
SpectrumList_PrecursorRecalculator.hpp 100644 2 kb
SpectrumList_PrecursorRecalculatorTest.cpp 100644 4 kb
SpectrumList_PrecursorRefine.cpp 100644 10 kb
SpectrumList_PrecursorRefine.hpp 100644 2 kb
SpectrumList_PrecursorRefineTest.cpp 100644 4 kb
SpectrumList_ScanSummer.cpp 100644 16 kb
SpectrumList_ScanSummer.hpp 100644 3 kb
SpectrumList_ScanSummerTest.cpp 100644 8 kb
SpectrumList_Smoother.cpp 100644 3 kb
SpectrumList_Smoother.hpp 100644 2 kb
SpectrumList_Sorter.cpp 100644 6 kb
SpectrumList_Sorter.hpp 100644 3 kb
SpectrumList_SorterTest.cpp 100644 10 kb
SpectrumList_TitleMaker.cpp 100644 11 kb
SpectrumList_TitleMaker.hpp 100644 3 kb
SpectrumList_ZeroSamplesFilter.cpp 100644 3 kb
SpectrumList_ZeroSamplesFilter.hpp 100644 2 kb
ThresholdFilter.cpp 100644 15 kb
ThresholdFilter.hpp 100644 4 kb
README.md
# Continuous integration The mzR project master branch is subjected to CI using travis: [![Build Status](https://travis-ci.org/sneumann/mzR.svg?branch=master)](https://travis-ci.org/sneumann/mzR) The devel branch is tested on multiple architectures by the BioC build farm: http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/ # Installation ## Installation on macOS If you install from source, you first need to install the netCDF headers and libraries: `brew install netcdf`, and then instal mzR the BioC way via: ``` if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("mzR", suppressUpdates = TRUE) ``` ## Installation on Linux We are not shipping the full set of boost headers due to size restrictions. This *might* cause compilation failure due to missing files. We have tested several OS and compiler build environments successfully, please report any compilation failures at https://github.com/sneumann/mzR/issues and we'll add the missing files. mzR-2.9.1 with boost-1.59.0 has been tested on the following compilers: On the BioC build farm (http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/) * malbec2 (Ubuntu 16.04.1, gcc-5.4.0) * tokay2 (Windows Server 2012 R2, MinGW-W64-4.9.3) * Failling oaxaca (Apple clang 3.5svn / 600.0.57) Also on: * Debian stretch/sid (gcc-5.4.0) * Ubuntu 16.04 (clang 3.8.0) * Ubuntu 16.04 (gcc-5.4.0) * Ubuntu 14.04 (gcc-4.8.2) * Ubuntu 12.04 (gcc-4.6.3) # Contributions Please read the [contributions guide and code of conduct](./CONTRIBUTIONS.md).