Name Mode Size
..
CubicHermiteSpline.cpp 100644 2 kb
CubicHermiteSpline.hpp 100644 3 kb
CubicHermiteSplineTest.cpp 100644 7 kb
DemuxDataProcessingStrings.hpp 100644 1 kb
DemuxDebugReadWriteTest.cpp 100644 4 kb
DemuxDebugReader.cpp 100644 3 kb
DemuxDebugReader.hpp 100644 4 kb
DemuxDebugWriter.cpp 100644 3 kb
DemuxDebugWriter.hpp 100644 3 kb
DemuxHelpers.cpp 100644 7 kb
DemuxHelpers.hpp 100644 9 kb
DemuxHelpersTest.cpp 100644 15 kb
DemuxSolver.cpp 100644 1 kb
DemuxSolver.hpp 100644 3 kb
DemuxSolverTest.cpp 100644 4 kb
DemuxTestData.cpp 100644 21 kb
DemuxTestData.hpp 100644 9 kb
DemuxTypes.hpp 100644 1 kb
EnumConstantNotPresentException.hpp 100644 1 kb
FSDemux.cpp 100644 9 kb
IDemultiplexer.hpp 100644 4 kb
IInterpolation.hpp 100644 2 kb
IPrecursorMaskCodec.hpp 100644 9 kb
Jamfile.jam 100644 3 kb
MSXDemultiplexer.cpp 100644 5 kb
MSXDemultiplexer.hpp 100644 3 kb
MatrixIO.cpp 100644 3 kb
MatrixIO.hpp 100644 3 kb
MatrixIOTest.cpp 100644 4 kb
OverlapDemultiplexer.cpp 100644 12 kb
OverlapDemultiplexer.hpp 100644 5 kb
PrecursorMaskCodec.cpp 100644 14 kb
PrecursorMaskCodec.hpp 100644 7 kb
PrecursorMaskCodecTest.cpp 100644 10 kb
SpectrumPeakExtractor.cpp 100644 4 kb
SpectrumPeakExtractor.hpp 100644 3 kb
SpectrumPeakExtractorTest.cpp 100644 5 kb
README.md
# Continuous integration The mzR project master branch is subjected to CI using travis: [![Build Status](https://travis-ci.org/sneumann/mzR.svg?branch=master)](https://travis-ci.org/sneumann/mzR) The devel branch is tested on multiple architectures by the BioC build farm: http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/ # Installation ## Installation on macOS If you install from source, you first need to install the netCDF headers and libraries: `brew install netcdf`, and then instal mzR the BioC way via: ``` if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("mzR", suppressUpdates = TRUE) ``` ## Installation on Linux We are not shipping the full set of boost headers due to size restrictions. This *might* cause compilation failure due to missing files. We have tested several OS and compiler build environments successfully, please report any compilation failures at https://github.com/sneumann/mzR/issues and we'll add the missing files. mzR-2.9.1 with boost-1.59.0 has been tested on the following compilers: On the BioC build farm (http://bioconductor.org/checkResults/devel/bioc-LATEST/mzR/) * malbec2 (Ubuntu 16.04.1, gcc-5.4.0) * tokay2 (Windows Server 2012 R2, MinGW-W64-4.9.3) * Failling oaxaca (Apple clang 3.5svn / 600.0.57) Also on: * Debian stretch/sid (gcc-5.4.0) * Ubuntu 16.04 (clang 3.8.0) * Ubuntu 16.04 (gcc-5.4.0) * Ubuntu 14.04 (gcc-4.8.2) * Ubuntu 12.04 (gcc-4.6.3) # Contributions Please read the [contributions guide and code of conduct](./CONTRIBUTIONS.md).