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Updating pwiz to 3_0_21263

Steffen Neumann authored on 23/09/2021 12:34:25
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+//
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+// $Id$
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+//
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+//
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+// Original author: Matt Chambers <matt.chambers .@. vanderbilt.edu>
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+//
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+// Copyright 2009 Vanderbilt University - Nashville, TN 37232
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+//
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+// Licensed under the Apache License, Version 2.0 (the "License"); 
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+// you may not use this file except in compliance with the License. 
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+// You may obtain a copy of the License at 
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+//
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+// http://www.apache.org/licenses/LICENSE-2.0
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+//
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+// Unless required by applicable law or agreed to in writing, software 
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+// distributed under the License is distributed on an "AS IS" BASIS, 
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+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
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+// See the License for the specific language governing permissions and 
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+// limitations under the License.
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+//
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+
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+#ifndef _BINARYINDEX_HPP_
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+#define _BINARYINDEX_HPP_
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+
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+
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+#include "Index.hpp"
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+#include <iostream>
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+
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+
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+namespace pwiz {
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+namespace data {
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+
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+
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+/// index implementation in a stream (intended for fstreams but any iostream works);
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+/// find(string id) is O(logN);
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+/// find(ordinal index) is O(1);
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+/// memory footprint is negligible
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+class PWIZ_API_DECL BinaryIndexStream : public Index
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+{
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+    public:
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+
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+    BinaryIndexStream(boost::shared_ptr<std::iostream> indexStreamPtr);
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+
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+    virtual void create(std::vector<Entry>& entries);
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+    virtual size_t size() const;
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+    virtual EntryPtr find(const std::string& id) const;
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+    virtual EntryPtr find(size_t index) const;
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+
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+    private:
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+    class Impl;
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+    boost::shared_ptr<Impl> impl_;
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+};
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+
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+
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+} // namespace data
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+} // namespace pwiz
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+
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+
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+#endif // _BINARYINDEX_HPP_
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Removed old pwiz code

Steffen Neumann authored on 22/09/2021 10:40:31
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-//
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-// $Id: BinaryIndexStream.hpp 1621 2009-12-15 17:43:15Z chambm $
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-//
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-//
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-// Original author: Matt Chambers <matt.chambers .@. vanderbilt.edu>
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-//
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-// Copyright 2009 Vanderbilt University - Nashville, TN 37232
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-//
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-// Licensed under the Apache License, Version 2.0 (the "License"); 
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-// you may not use this file except in compliance with the License. 
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-// You may obtain a copy of the License at 
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-//
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-// http://www.apache.org/licenses/LICENSE-2.0
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-//
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-// Unless required by applicable law or agreed to in writing, software 
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-// distributed under the License is distributed on an "AS IS" BASIS, 
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-// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
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-// See the License for the specific language governing permissions and 
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-// limitations under the License.
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-//
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-
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-#ifndef _BINARYINDEX_HPP_
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-#define _BINARYINDEX_HPP_
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-
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-
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-#include "Index.hpp"
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-#include <iostream>
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-
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-
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-namespace pwiz {
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-namespace data {
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-
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-
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-/// index implementation in a stream (intended for fstreams but any iostream works);
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-/// find(string id) is O(logN);
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-/// find(ordinal index) is O(1);
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-/// memory footprint is negligible
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-class PWIZ_API_DECL BinaryIndexStream : public Index
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-{
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-    public:
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-
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-    BinaryIndexStream(boost::shared_ptr<std::iostream> indexStreamPtr);
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-
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-    virtual void create(std::vector<Entry>& entries);
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-    virtual size_t size() const;
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-    virtual EntryPtr find(const std::string& id) const;
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-    virtual EntryPtr find(size_t index) const;
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-
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-    private:
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-    class Impl;
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-    boost::shared_ptr<Impl> impl_;
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-};
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-
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-
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-} // namespace data
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-} // namespace pwiz
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-
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-
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-#endif // _BINARYINDEX_HPP_
Browse code

Added the mzR package to the repository.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/mzR@57456 bc3139a8-67e5-0310-9ffc-ced21a209358

c.wong authored on 15/08/2011 19:53:29
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+//
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+// $Id: BinaryIndexStream.hpp 1621 2009-12-15 17:43:15Z chambm $
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+//
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+//
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+// Original author: Matt Chambers <matt.chambers .@. vanderbilt.edu>
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+//
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+// Copyright 2009 Vanderbilt University - Nashville, TN 37232
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+//
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+// Licensed under the Apache License, Version 2.0 (the "License"); 
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+// you may not use this file except in compliance with the License. 
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+// You may obtain a copy of the License at 
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+//
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+// http://www.apache.org/licenses/LICENSE-2.0
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+//
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+// Unless required by applicable law or agreed to in writing, software 
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+// distributed under the License is distributed on an "AS IS" BASIS, 
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+// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 
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+// See the License for the specific language governing permissions and 
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+// limitations under the License.
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+//
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+
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+#ifndef _BINARYINDEX_HPP_
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+#define _BINARYINDEX_HPP_
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+
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+
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+#include "Index.hpp"
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+#include <iostream>
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+
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+
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+namespace pwiz {
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+namespace data {
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+
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+
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+/// index implementation in a stream (intended for fstreams but any iostream works);
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+/// find(string id) is O(logN);
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+/// find(ordinal index) is O(1);
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+/// memory footprint is negligible
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+class PWIZ_API_DECL BinaryIndexStream : public Index
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+{
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+    public:
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+
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+    BinaryIndexStream(boost::shared_ptr<std::iostream> indexStreamPtr);
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+
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+    virtual void create(std::vector<Entry>& entries);
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+    virtual size_t size() const;
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+    virtual EntryPtr find(const std::string& id) const;
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+    virtual EntryPtr find(size_t index) const;
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+
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+    private:
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+    class Impl;
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+    boost::shared_ptr<Impl> impl_;
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+};
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+
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+
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+} // namespace data
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+} // namespace pwiz
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+
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+
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+#endif // _BINARYINDEX_HPP_