- Fix header for pwiz backend to always return a `data.frame`.
- Update documentation.
jorainer authored on 25/11/2021 08:27:02
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@@ -2,6 +2,7 @@ CHANGES IN VERSION 2.29.2 |
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o Update to Proteowizard 3_0_21263 |
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o Removed RAMP backend, dropping ability to read mzData |
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+ o header always returns a data.frame even for a single scan. |
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CHANGES IN VERSION 2.29.1 |
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------------------------- |
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@@ -51,10 +51,6 @@ setMethod("detector", "mzRpwiz",
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setMethod("header", c("mzRpwiz", "missing"),
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function(object) {
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scans <- seq_len(object@backend$getLastScan()) |
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- ## res <- object@backend$getAllScanHeaderInfo() |
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- ## res$filterString <- as.character(res$filterString) |
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- ## res$spectrumId <- as.character(res$spectrumId) |
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- ## res |
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header(object, scans) |
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}) |
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@@ -63,10 +59,6 @@ setMethod("header", c("mzRpwiz", "numeric"),
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res <- object@backend$getScanHeaderInfo(scans) |
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res$filterString <- as.character(res$filterString) |
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res$spectrumId <- as.character(res$spectrumId) |
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- if (length(scans) == 1) {
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- ## Convert data.frame to list to be conform with old code |
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- res <- as.list(res) |
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- } |
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res |
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}) |
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@@ -98,7 +98,7 @@ |
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provided (i.e all spectra in the oject are retured). \code{peaksCount}
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will return a numeric of length \code{n}.
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- The \code{\link{header}} function returns a list containing
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+ The \code{\link{header}} function returns a \code{data.frame} containing
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\code{seqNum}, \code{acquisitionNum}, \code{msLevel},
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\code{peaksCount}, \code{totIonCurrent}, \code{retentionTime} (in
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seconds), \code{basePeakMZ}, \code{basePeakIntensity},
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