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format-version: 1.2
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-data-version: 4.0.1
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-date: 15:07:2016 14:16
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+data-version: 4.1.30
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+date: 30:08:2019 16:10
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saved-by: Gerhard Mayer
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-auto-generated-by: OBO-Edit 2.3
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-import: http://www.berkeleybop.org/ontologies/pato/pato.obo
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-import: http://www.berkeleybop.org/ontologies/uo/uo.obo
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+auto-generated-by: OBO-Edit 2.3.1
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+import: http://ontologies.berkeleybop.org/pato.obo
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+import: http://ontologies.berkeleybop.org/uo.obo
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default-namespace: MS
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namespace-id-rule: * MS:$sequence(7,0,9999999)$
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+namespace-id-rule: * PEFF:$sequence(7,0,9999999)$
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remark: namespace: MS
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-remark: version: 4.0.1
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-remark: release date: 2016-07-15
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+remark: namespace: PEFF
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remark: coverage: Mass spectrometer output files and spectra interpretation
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remark: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
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remark: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
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@@ -22,8 +22,8 @@ remark: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standa
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remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page
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remark: For any queries contact psidev-ms-vocab@lists.sourceforge.net
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remark: URL: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo
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-remark: This work is licensed under the Creative Commons Attribution 3.0 Unported License.
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-remark: To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
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+remark: This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license.
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+remark: To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
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ontology: ms
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29
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[Typedef]
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...
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@@ -930,7 +930,6 @@ is_a: MS:1000525 ! spectrum representation
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930
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930
|
id: MS:1000129
|
931
|
931
|
name: negative scan
|
932
|
932
|
def: "Polarity of the scan is negative." [PSI:MS]
|
933
|
|
-is_a: PATO:0002186 ! polarity
|
934
|
933
|
is_a: MS:1000465 ! scan polarity
|
935
|
934
|
is_a: MS:1000808 ! chromatogram attribute
|
936
|
935
|
|
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@@ -938,7 +937,6 @@ is_a: MS:1000808 ! chromatogram attribute
|
938
|
937
|
id: MS:1000130
|
939
|
938
|
name: positive scan
|
940
|
939
|
def: "Polarity of the scan is positive." [PSI:MS]
|
941
|
|
-is_a: PATO:0002186 ! polarity
|
942
|
940
|
is_a: MS:1000465 ! scan polarity
|
943
|
941
|
is_a: MS:1000808 ! chromatogram attribute
|
944
|
942
|
|
...
|
...
|
@@ -990,7 +988,6 @@ id: MS:1000137
|
990
|
988
|
name: electron volt
|
991
|
989
|
def: "OBSOLETE A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J." [PSI:MS]
|
992
|
990
|
comment: This term was made obsolete because it was redundant with the Unit Ontology term electron volt (UO:0000266).
|
993
|
|
-synonym: "eV" EXACT []
|
994
|
991
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is_obsolete: true
|
995
|
992
|
|
996
|
993
|
[Term]
|
...
|
...
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@@ -1070,7 +1067,7 @@ is_a: MS:1001534 ! Bruker Daltonics flex series
|
1070
|
1067
|
[Term]
|
1071
|
1068
|
id: MS:1000150
|
1072
|
1069
|
name: Auto Spec Ultima NT
|
1073
|
|
-def: "Waters AutoSpec Ultima NT MS." [PSI:MS]
|
|
1070
|
+def: "Waters magnetic sector based AutoSpec Ultima NT MS." [PSI:MS]
|
1074
|
1071
|
is_a: MS:1000126 ! Waters instrument model
|
1075
|
1072
|
|
1076
|
1073
|
[Term]
|
...
|
...
|
@@ -1304,7 +1301,7 @@ is_a: MS:1000126 ! Waters instrument model
|
1304
|
1301
|
|
1305
|
1302
|
[Term]
|
1306
|
1303
|
id: MS:1000189
|
1307
|
|
-name: Q-Tof ultima
|
|
1304
|
+name: Q-Tof Ultima
|
1308
|
1305
|
def: "Waters oa-ToF based Q-Tof Ultima." [PSI:MS]
|
1309
|
1306
|
is_a: MS:1000126 ! Waters instrument model
|
1310
|
1307
|
|
...
|
...
|
@@ -1317,13 +1314,13 @@ is_a: MS:1000121 ! SCIEX instrument model
|
1317
|
1314
|
[Term]
|
1318
|
1315
|
id: MS:1000191
|
1319
|
1316
|
name: quattro micro
|
1320
|
|
-def: "Waters oa-ToF based micro." [PSI:MS]
|
|
1317
|
+def: "Waters (triple) quadrupole based micro." [PSI:MS]
|
1321
|
1318
|
is_a: MS:1000126 ! Waters instrument model
|
1322
|
1319
|
|
1323
|
1320
|
[Term]
|
1324
|
1321
|
id: MS:1000192
|
1325
|
|
-name: Quattro UItima
|
1326
|
|
-def: "Waters oa-ToF based Ultima." [PSI:MS]
|
|
1322
|
+name: Quattro Ultima
|
|
1323
|
+def: "Waters (triple) quadrupole based Ultima." [PSI:MS]
|
1327
|
1324
|
is_a: MS:1000126 ! Waters instrument model
|
1328
|
1325
|
|
1329
|
1326
|
[Term]
|
...
|
...
|
@@ -1455,7 +1452,6 @@ is_a: MS:1000231 ! peak
|
1455
|
1452
|
id: MS:1000211
|
1456
|
1453
|
name: OBSOLETE charge number
|
1457
|
1454
|
def: "OBSOLETE The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state." [PSI:MS]
|
1458
|
|
-synonym: "z" EXACT []
|
1459
|
1455
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
1460
|
1456
|
is_obsolete: true
|
1461
|
1457
|
|
...
|
...
|
@@ -1464,7 +1460,6 @@ id: MS:1000212
|
1464
|
1460
|
name: dalton
|
1465
|
1461
|
def: "OBSOLETE A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg." [PSI:MS]
|
1466
|
1462
|
comment: This term was made obsolete because it was redundant with the Unit Ontology term dalton (UO:0000221).
|
1467
|
|
-synonym: "Da" EXACT []
|
1468
|
1463
|
is_obsolete: true
|
1469
|
1464
|
|
1470
|
1465
|
[Term]
|
...
|
...
|
@@ -1644,10 +1639,9 @@ is_obsolete: true
|
1644
|
1639
|
[Term]
|
1645
|
1640
|
id: MS:1000235
|
1646
|
1641
|
name: total ion current chromatogram
|
1647
|
|
-def: "Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time." [PSI:MS]
|
|
1642
|
+def: "Representation of the total ion current detected in each of a series of mass spectra versus time." [PSI:MS]
|
1648
|
1643
|
synonym: "TIC chromatogram" EXACT []
|
1649
|
|
-is_a: MS:1000524 ! data file content
|
1650
|
|
-is_a: MS:1000810 ! mass chromatogram
|
|
1644
|
+is_a: MS:1000810 ! ion current chromatogram
|
1651
|
1645
|
|
1652
|
1646
|
[Term]
|
1653
|
1647
|
id: MS:1000236
|
...
|
...
|
@@ -2274,7 +2268,6 @@ id: MS:1000322
|
2274
|
2268
|
name: charge inversion mass spectrum
|
2275
|
2269
|
def: "The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z." [PSI:MS]
|
2276
|
2270
|
is_a: MS:1000294 ! mass spectrum
|
2277
|
|
-is_a: MS:1000524 ! data file content
|
2278
|
2271
|
|
2279
|
2272
|
[Term]
|
2280
|
2273
|
id: MS:1000323
|
...
|
...
|
@@ -2299,7 +2292,6 @@ name: constant neutral gain spectrum
|
2299
|
2292
|
def: "A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell." [PSI:MS]
|
2300
|
2293
|
synonym: "constant neutral mass gain spectrum" EXACT []
|
2301
|
2294
|
is_a: MS:1000294 ! mass spectrum
|
2302
|
|
-is_a: MS:1000524 ! data file content
|
2303
|
2295
|
|
2304
|
2296
|
[Term]
|
2305
|
2297
|
id: MS:1000326
|
...
|
...
|
@@ -2307,7 +2299,6 @@ name: constant neutral loss spectrum
|
2307
|
2299
|
def: "A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum." [PSI:MS]
|
2308
|
2300
|
synonym: "constant neutral mass loss spectrum" EXACT []
|
2309
|
2301
|
is_a: MS:1000294 ! mass spectrum
|
2310
|
|
-is_a: MS:1000524 ! data file content
|
2311
|
2302
|
|
2312
|
2303
|
[Term]
|
2313
|
2304
|
id: MS:1000327
|
...
|
...
|
@@ -2413,7 +2404,6 @@ id: MS:1000341
|
2413
|
2404
|
name: precursor ion spectrum
|
2414
|
2405
|
def: "Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z." [PSI:MS]
|
2415
|
2406
|
is_a: MS:1000294 ! mass spectrum
|
2416
|
|
-is_a: MS:1000524 ! data file content
|
2417
|
2407
|
|
2418
|
2408
|
[Term]
|
2419
|
2409
|
id: MS:1000342
|
...
|
...
|
@@ -2429,7 +2419,6 @@ name: product ion spectrum
|
2429
|
2419
|
def: "OBSOLETE A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions." [PSI:MS]
|
2430
|
2420
|
comment: This term was made obsolete because it was merged with MSn spectrum (MS:1000580).
|
2431
|
2421
|
is_a: MS:1000294 ! mass spectrum
|
2432
|
|
-is_a: MS:1000524 ! data file content
|
2433
|
2422
|
is_obsolete: true
|
2434
|
2423
|
|
2435
|
2424
|
[Term]
|
...
|
...
|
@@ -2492,9 +2481,8 @@ is_obsolete: true
|
2492
|
2481
|
[Term]
|
2493
|
2482
|
id: MS:1000353
|
2494
|
2483
|
name: adduct ion
|
2495
|
|
-def: "OBSOLETE Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules." [PSI:MS]
|
2496
|
|
-comment: This child of the former purgatory term ion chemical type was made obsolete.
|
2497
|
|
-is_obsolete: true
|
|
2484
|
+def: "Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules." [PSI:MS]
|
|
2485
|
+is_a: MS:1002806 ! ion
|
2498
|
2486
|
|
2499
|
2487
|
[Term]
|
2500
|
2488
|
id: MS:1000354
|
...
|
...
|
@@ -3053,7 +3041,7 @@ is_obsolete: true
|
3053
|
3041
|
id: MS:1000437
|
3054
|
3042
|
name: ion reaction
|
3055
|
3043
|
def: "OBSOLETE Chemical transformation involving an ion." [PSI:MS]
|
3056
|
|
-comment: This child of the former purgatory term ion? was made obsolete.
|
|
3044
|
+comment: This child of the former purgatory term ion was made obsolete.
|
3057
|
3045
|
is_obsolete: true
|
3058
|
3046
|
|
3059
|
3047
|
[Term]
|
...
|
...
|
@@ -3238,7 +3226,7 @@ is_obsolete: true
|
3238
|
3226
|
[Term]
|
3239
|
3227
|
id: MS:1000465
|
3240
|
3228
|
name: scan polarity
|
3241
|
|
-def: "An acquisition mode to which specifies weather polarity is negative, positive or alternating." [PSI:MS]
|
|
3229
|
+def: "Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer." [PSI:MS]
|
3242
|
3230
|
relationship: part_of MS:1000441 ! scan
|
3243
|
3231
|
|
3244
|
3232
|
[Term]
|
...
|
...
|
@@ -3262,8 +3250,8 @@ is_a: MS:1000490 ! Agilent instrument model
|
3262
|
3250
|
|
3263
|
3251
|
[Term]
|
3264
|
3252
|
id: MS:1000469
|
3265
|
|
-name: 6120 Quadrupole LC/MS
|
3266
|
|
-def: "The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition." [PSI:MS]
|
|
3253
|
+name: 6120A Quadrupole LC/MS
|
|
3254
|
+def: "The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition." [PSI:MS]
|
3267
|
3255
|
is_a: MS:1000490 ! Agilent instrument model
|
3268
|
3256
|
|
3269
|
3257
|
[Term]
|
...
|
...
|
@@ -3515,21 +3503,21 @@ relationship: has_units UO:0000269 ! absorbance unit
|
3515
|
3503
|
id: MS:1000506
|
3516
|
3504
|
name: ion role
|
3517
|
3505
|
def: "OBSOLETE Ion Role." [PSI:MS]
|
3518
|
|
-comment: This child of the former purgatory term ion? was made obsolete.
|
|
3506
|
+comment: This child of the former purgatory term ion was made obsolete.
|
3519
|
3507
|
is_obsolete: true
|
3520
|
3508
|
|
3521
|
3509
|
[Term]
|
3522
|
3510
|
id: MS:1000507
|
3523
|
3511
|
name: ion attribute
|
3524
|
3512
|
def: "OBSOLETE Ion properties that are associated with a value." [PSI:MS]
|
3525
|
|
-comment: This child of the former purgatory term ion? was made obsolete.
|
|
3513
|
+comment: This child of the former purgatory term ion was made obsolete.
|
3526
|
3514
|
is_obsolete: true
|
3527
|
3515
|
|
3528
|
3516
|
[Term]
|
3529
|
3517
|
id: MS:1000508
|
3530
|
3518
|
name: ion chemical type
|
3531
|
3519
|
def: "OBSOLETE Ion Type." [PSI:MS]
|
3532
|
|
-comment: This child of the former purgatory term ion? was made obsolete.
|
|
3520
|
+comment: This child of the former purgatory term ion was made obsolete.
|
3533
|
3521
|
is_obsolete: true
|
3534
|
3522
|
|
3535
|
3523
|
[Term]
|
...
|
...
|
@@ -4021,7 +4009,6 @@ synonym: "Q1 spectrum" EXACT []
|
4021
|
4009
|
synonym: "Q3 spectrum" EXACT []
|
4022
|
4010
|
synonym: "Single-Stage Mass Spectrometry" EXACT []
|
4023
|
4011
|
is_a: MS:1000294 ! mass spectrum
|
4024
|
|
-is_a: MS:1000524 ! data file content
|
4025
|
4012
|
|
4026
|
4013
|
[Term]
|
4027
|
4014
|
id: MS:1000580
|
...
|
...
|
@@ -4031,14 +4018,12 @@ synonym: "multiple-stage mass spectrometry spectrum" EXACT []
|
4031
|
4018
|
synonym: "nth generation product ion spectrum" EXACT []
|
4032
|
4019
|
synonym: "product ion spectrum" EXACT []
|
4033
|
4020
|
is_a: MS:1000294 ! mass spectrum
|
4034
|
|
-is_a: MS:1000524 ! data file content
|
4035
|
4021
|
|
4036
|
4022
|
[Term]
|
4037
|
4023
|
id: MS:1000581
|
4038
|
4024
|
name: CRM spectrum
|
4039
|
4025
|
def: "Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored." [PSI:MS]
|
4040
|
4026
|
is_a: MS:1000294 ! mass spectrum
|
4041
|
|
-is_a: MS:1000524 ! data file content
|
4042
|
4027
|
|
4043
|
4028
|
[Term]
|
4044
|
4029
|
id: MS:1000582
|
...
|
...
|
@@ -4048,7 +4033,6 @@ synonym: "MIM spectrum" EXACT []
|
4048
|
4033
|
synonym: "multiple ion monitoring spectrum" EXACT []
|
4049
|
4034
|
synonym: "selected ion monitoring spectrum" EXACT []
|
4050
|
4035
|
is_a: MS:1000294 ! mass spectrum
|
4051
|
|
-is_a: MS:1000524 ! data file content
|
4052
|
4036
|
|
4053
|
4037
|
[Term]
|
4054
|
4038
|
id: MS:1000583
|
...
|
...
|
@@ -4058,7 +4042,6 @@ synonym: "MRM spectrum" EXACT []
|
4058
|
4042
|
synonym: "multiple reaction monitoring spectrum" EXACT []
|
4059
|
4043
|
synonym: "selected reaction monitoring spectrum" EXACT []
|
4060
|
4044
|
is_a: MS:1000294 ! mass spectrum
|
4061
|
|
-is_a: MS:1000524 ! data file content
|
4062
|
4045
|
|
4063
|
4046
|
[Term]
|
4064
|
4047
|
id: MS:1000584
|
...
|
...
|
@@ -4342,29 +4325,27 @@ is_a: MS:1000026 ! detector type
|
4342
|
4325
|
[Term]
|
4343
|
4326
|
id: MS:1000625
|
4344
|
4327
|
name: chromatogram
|
4345
|
|
-def: "The representation of detector response versus time." [PSI:MS]
|
|
4328
|
+def: "Representation of a chromatographic separation attribute measurement versus time." [PSI:MS]
|
4346
|
4329
|
relationship: part_of MS:1001458 ! spectrum generation information
|
4347
|
4330
|
|
4348
|
4331
|
[Term]
|
4349
|
4332
|
id: MS:1000626
|
4350
|
4333
|
name: chromatogram type
|
4351
|
|
-def: "Broad category or type of a chromatogram." [PSI:MS]
|
|
4334
|
+def: "Type of chromatogram measurement being represented." [PSI:MS]
|
4352
|
4335
|
relationship: part_of MS:1000625 ! chromatogram
|
4353
|
4336
|
|
4354
|
4337
|
[Term]
|
4355
|
4338
|
id: MS:1000627
|
4356
|
4339
|
name: selected ion current chromatogram
|
4357
|
|
-def: "Chromatogram created by creating an array of the measurements of a specific single ion current at each time point." [PSI:MS]
|
|
4340
|
+def: "Representation of an array of the measurements of a specific single ion current versus time." [PSI:MS]
|
4358
|
4341
|
synonym: "SIC chromatogram" EXACT []
|
4359
|
|
-is_a: MS:1000524 ! data file content
|
4360
|
|
-is_a: MS:1000810 ! mass chromatogram
|
|
4342
|
+is_a: MS:1000810 ! ion current chromatogram
|
4361
|
4343
|
|
4362
|
4344
|
[Term]
|
4363
|
4345
|
id: MS:1000628
|
4364
|
4346
|
name: basepeak chromatogram
|
4365
|
|
-def: "Chromatogram created by creating an array of the most intense peaks at each time point." [PSI:MS]
|
4366
|
|
-is_a: MS:1000524 ! data file content
|
4367
|
|
-is_a: MS:1000810 ! mass chromatogram
|
|
4347
|
+def: "Representation of an array of the most intense peaks versus time." [PSI:MS]
|
|
4348
|
+is_a: MS:1000810 ! ion current chromatogram
|
4368
|
4349
|
|
4369
|
4350
|
[Term]
|
4370
|
4351
|
id: MS:1000629
|
...
|
...
|
@@ -4693,8 +4674,8 @@ is_a: MS:1000490 ! Agilent instrument model
|
4693
|
4674
|
|
4694
|
4675
|
[Term]
|
4695
|
4676
|
id: MS:1000677
|
4696
|
|
-name: 6520 Quadrupole Time-of-Flight LC/MS
|
4697
|
|
-def: "The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources." [PSI:MS]
|
|
4677
|
+name: 6520A Quadrupole Time-of-Flight LC/MS
|
|
4678
|
+def: "The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources." [PSI:MS]
|
4698
|
4679
|
is_a: MS:1000490 ! Agilent instrument model
|
4699
|
4680
|
|
4700
|
4681
|
[Term]
|
...
|
...
|
@@ -5172,7 +5153,7 @@ is_a: MS:1001486 ! data filtering
|
5172
|
5153
|
id: MS:1000747
|
5173
|
5154
|
name: completion time
|
5174
|
5155
|
def: "The time that a data processing action was finished." [PSI:MS]
|
5175
|
|
-xref: value-type:xsd\:date "The allowed value-type for this CV term."
|
|
5156
|
+xref: value-type:xsd\:dateTime "The allowed value-type for this CV term."
|
5176
|
5157
|
is_a: MS:1000630 ! data processing parameter
|
5177
|
5158
|
|
5178
|
5159
|
[Term]
|
...
|
...
|
@@ -5463,14 +5444,12 @@ relationship: has_units UO:0000269 ! absorbance unit
|
5463
|
5444
|
id: MS:1000789
|
5464
|
5445
|
name: enhanced multiply charged spectrum
|
5465
|
5446
|
def: "MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions." [PSI:MS]
|
5466
|
|
-is_a: MS:1000524 ! data file content
|
5467
|
5447
|
is_a: MS:1000579 ! MS1 spectrum
|
5468
|
5448
|
|
5469
|
5449
|
[Term]
|
5470
|
5450
|
id: MS:1000790
|
5471
|
5451
|
name: time-delayed fragmentation spectrum
|
5472
|
5452
|
def: "MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation." [PSI:MS]
|
5473
|
|
-is_a: MS:1000524 ! data file content
|
5474
|
5453
|
is_a: MS:1000580 ! MSn spectrum
|
5475
|
5454
|
|
5476
|
5455
|
[Term]
|
...
|
...
|
@@ -5621,15 +5600,15 @@ is_a: MS:1000808 ! chromatogram attribute
|
5621
|
5600
|
|
5622
|
5601
|
[Term]
|
5623
|
5602
|
id: MS:1000810
|
5624
|
|
-name: mass chromatogram
|
5625
|
|
-def: "A plot of the relative abundance of a beam or other collection of ions as a function of the retention time." [PSI:MS]
|
|
5603
|
+name: ion current chromatogram
|
|
5604
|
+def: "Representation of the current of ions versus time." [PSI:MS]
|
5626
|
5605
|
is_a: MS:1000524 ! data file content
|
5627
|
5606
|
is_a: MS:1000626 ! chromatogram type
|
5628
|
5607
|
|
5629
|
5608
|
[Term]
|
5630
|
5609
|
id: MS:1000811
|
5631
|
5610
|
name: electromagnetic radiation chromatogram
|
5632
|
|
-def: "The measurement of electromagnetic properties as a function of the retention time." [PSI:MS]
|
|
5611
|
+def: "Representation of electromagnetic properties versus time." [PSI:MS]
|
5633
|
5612
|
synonym: "EMR radiation chromatogram" EXACT []
|
5634
|
5613
|
is_a: MS:1000524 ! data file content
|
5635
|
5614
|
is_a: MS:1000626 ! chromatogram type
|
...
|
...
|
@@ -5637,15 +5616,13 @@ is_a: MS:1000626 ! chromatogram type
|
5637
|
5616
|
[Term]
|
5638
|
5617
|
id: MS:1000812
|
5639
|
5618
|
name: absorption chromatogram
|
5640
|
|
-def: "The measurement of light absorbed by the sample as a function of the retention time." [PSI:MS]
|
5641
|
|
-is_a: MS:1000524 ! data file content
|
|
5619
|
+def: "Representation of light absorbed by the sample versus time." [PSI:MS]
|
5642
|
5620
|
is_a: MS:1000811 ! electromagnetic radiation chromatogram
|
5643
|
5621
|
|
5644
|
5622
|
[Term]
|
5645
|
5623
|
id: MS:1000813
|
5646
|
5624
|
name: emission chromatogram
|
5647
|
|
-def: "The measurement of light emitted by the sample as a function of the retention time." [PSI:MS]
|
5648
|
|
-is_a: MS:1000524 ! data file content
|
|
5625
|
+def: "Representation of light emitted by the sample versus time." [PSI:MS]
|
5649
|
5626
|
is_a: MS:1000811 ! electromagnetic radiation chromatogram
|
5650
|
5627
|
|
5651
|
5628
|
[Term]
|
...
|
...
|
@@ -5693,6 +5670,7 @@ def: "A data array of flow rate measurements." [PSI:MS]
|
5693
|
5670
|
xref: binary-data-type:MS\:1000521 "32-bit float"
|
5694
|
5671
|
xref: binary-data-type:MS\:1000523 "64-bit float"
|
5695
|
5672
|
is_a: MS:1000513 ! binary data array
|
|
5673
|
+relationship: has_units UO:0000271 ! microliters per minute
|
5696
|
5674
|
|
5697
|
5675
|
[Term]
|
5698
|
5676
|
id: MS:1000821
|
...
|
...
|
@@ -6089,7 +6067,7 @@ relationship: has_units UO:0000218 ! volt
|
6089
|
6067
|
id: MS:1000878
|
6090
|
6068
|
name: external reference identifier
|
6091
|
6069
|
def: "An identifier/accession number to an external reference database." [PSI:MS]
|
6092
|
|
-relationship: part_of MS:0000000 ! Proteomics Standards Initiative Mass Spectrometry Vocabularies
|
|
6070
|
+is_a: MS:1002840 ! external reference data
|
6093
|
6071
|
|
6094
|
6072
|
[Term]
|
6095
|
6073
|
id: MS:1000879
|
...
|
...
|
@@ -6548,9 +6526,9 @@ is_a: MS:1001011 ! search database details
|
6548
|
6526
|
[Term]
|
6549
|
6527
|
id: MS:1001016
|
6550
|
6528
|
name: database version
|
6551
|
|
-def: "OBSOLETE: Use attribute in mzIdentML instead. Version of the search database." [PSI:PI]
|
|
6529
|
+def: "Version of the search database. In mzIdentML use the attribute instead." [PSI:PI]
|
|
6530
|
+xref: value-type:xsd\:string "The allowed value-type for this CV term."
|
6552
|
6531
|
is_a: MS:1001011 ! search database details
|
6553
|
|
-is_obsolete: true
|
6554
|
6532
|
|
6555
|
6533
|
[Term]
|
6556
|
6534
|
id: MS:1001017
|
...
|
...
|
@@ -7116,8 +7094,7 @@ name: retention time(s)
|
7116
|
7094
|
def: "OBSOLETE Retention time of the spectrum from the source file." [PSI:PI]
|
7117
|
7095
|
comment: This term was made obsolete because scan start time (MS:1000016) should be used instead.
|
7118
|
7096
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7119
|
|
-is_a: MS:1001105 ! peptide result details
|
7120
|
|
-is_a: MS:1001405 ! spectrum identification result details
|
|
7097
|
+is_a: MS:1001105 ! peptide sequence-level identification attribute
|
7121
|
7098
|
relationship: has_units UO:0000010 ! second
|
7122
|
7099
|
relationship: has_units UO:0000031 ! minute
|
7123
|
7100
|
is_obsolete: true
|
...
|
...
|
@@ -7226,7 +7203,7 @@ name: peptide raw area
|
7226
|
7203
|
def: "OBSOLETE Peptide raw area." [PSI:PI]
|
7227
|
7204
|
comment: This term was made obsolete because it is replaced by 'MS1 feature area' (MS:1001844).
|
7228
|
7205
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7229
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
7206
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
7230
|
7207
|
is_obsolete: true
|
7231
|
7208
|
|
7232
|
7209
|
[Term]
|
...
|
...
|
@@ -7234,35 +7211,35 @@ id: MS:1001131
|
7234
|
7211
|
name: error on peptide area
|
7235
|
7212
|
def: "Error on peptide area." [PSI:PI]
|
7236
|
7213
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7237
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
7214
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
7238
|
7215
|
|
7239
|
7216
|
[Term]
|
7240
|
7217
|
id: MS:1001132
|
7241
|
7218
|
name: peptide ratio
|
7242
|
7219
|
def: "Peptide ratio." [PSI:PI]
|
7243
|
7220
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7244
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
7221
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
7245
|
7222
|
|
7246
|
7223
|
[Term]
|
7247
|
7224
|
id: MS:1001133
|
7248
|
7225
|
name: error on peptide ratio
|
7249
|
7226
|
def: "Error on peptide ratio." [PSI:PI]
|
7250
|
7227
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7251
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
7228
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
7252
|
7229
|
|
7253
|
7230
|
[Term]
|
7254
|
7231
|
id: MS:1001134
|
7255
|
7232
|
name: protein ratio
|
7256
|
7233
|
def: "Protein ratio." [PSI:PI]
|
7257
|
7234
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7258
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
7235
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
7259
|
7236
|
|
7260
|
7237
|
[Term]
|
7261
|
7238
|
id: MS:1001135
|
7262
|
7239
|
name: error on protein ratio
|
7263
|
7240
|
def: "Error on protein ratio." [PSI:PI]
|
7264
|
7241
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7265
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
7242
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
7266
|
7243
|
|
7267
|
7244
|
[Term]
|
7268
|
7245
|
id: MS:1001136
|
...
|
...
|
@@ -7270,7 +7247,7 @@ name: p-value (protein diff from 1 randomly)
|
7270
|
7247
|
def: "OBSOLETE P-value (protein diff from 1 randomly)." [PSI:PI]
|
7271
|
7248
|
comment: This term was made obsolete because it is replaced by 't-test p-value' (MS:1001855).
|
7272
|
7249
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7273
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
7250
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
7274
|
7251
|
is_obsolete: true
|
7275
|
7252
|
|
7276
|
7253
|
[Term]
|
...
|
...
|
@@ -7585,7 +7562,7 @@ name: p-value
|
7585
|
7562
|
def: "OBSOLETE Quality estimation by p-value." [PSI:PI]
|
7586
|
7563
|
comment: This term was made obsolete because now is split into peptide and protein terms.
|
7587
|
7564
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
7588
|
|
-is_a: MS:1001092 ! peptide identification confidence metric
|
|
7565
|
+is_a: MS:1001092 ! peptide sequence-level identification statistic
|
7589
|
7566
|
is_a: MS:1001198 ! protein identification confidence metric
|
7590
|
7567
|
is_obsolete: true
|
7591
|
7568
|
|
...
|
...
|
@@ -7634,7 +7611,7 @@ is_a: MS:1001450 ! decoy DB details
|
7634
|
7611
|
id: MS:1001198
|
7635
|
7612
|
name: protein identification confidence metric
|
7636
|
7613
|
def: "Identification confidence metric for a protein." [PSI:PI]
|
7637
|
|
-is_a: MS:1001116 ! single protein result details
|
|
7614
|
+is_a: MS:1001116 ! single protein identification statistic
|
7638
|
7615
|
|
7639
|
7616
|
[Term]
|
7640
|
7617
|
id: MS:1001199
|
...
|
...
|
@@ -8230,6 +8207,7 @@ is_a: MS:1002093 ! search engine input parameter
|
8230
|
8207
|
id: MS:1001303
|
8231
|
8208
|
name: Arg-C
|
8232
|
8209
|
def: "Endoproteinase Arg-C." [PSI:PI]
|
|
8210
|
+synonym: "Trypsin/R" EXACT []
|
8233
|
8211
|
synonym: "Clostripain" EXACT []
|
8234
|
8212
|
is_a: MS:1001045 ! cleavage agent name
|
8235
|
8213
|
relationship: has_regexp MS:1001272 ! (?<=R)(?!P)
|
...
|
...
|
@@ -8273,6 +8251,7 @@ relationship: has_regexp MS:1001334 ! ((?<=D))|((?=D))
|
8273
|
8251
|
id: MS:1001309
|
8274
|
8252
|
name: Lys-C
|
8275
|
8253
|
def: "Endoproteinase Lys-C." [PSI:PI]
|
|
8254
|
+synonym: "Trypsin/K" EXACT []
|
8276
|
8255
|
is_a: MS:1001045 ! cleavage agent name
|
8277
|
8256
|
relationship: has_regexp MS:1001335 ! (?<=K)(?!P)
|
8278
|
8257
|
|
...
|
...
|
@@ -9001,13 +8980,13 @@ is_a: MS:1001143 ! PSM-level search engine specific statistic
|
9001
|
8980
|
[Term]
|
9002
|
8981
|
id: MS:1001421
|
9003
|
8982
|
name: pepXML format
|
9004
|
|
-def: "Source file for this mzIdentML was in a pepXML file format." [PSI:PI]
|
|
8983
|
+def: "The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers." [PSI:PI]
|
9005
|
8984
|
is_a: MS:1001040 ! intermediate analysis format
|
9006
|
8985
|
|
9007
|
8986
|
[Term]
|
9008
|
8987
|
id: MS:1001422
|
9009
|
8988
|
name: protXML format
|
9010
|
|
-def: "Source file for this mzIdentML was in protXML file format." [PSI:PI]
|
|
8989
|
+def: "The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers." [PSI:PI]
|
9011
|
8990
|
is_a: MS:1001040 ! intermediate analysis format
|
9012
|
8991
|
|
9013
|
8992
|
[Term]
|
...
|
...
|
@@ -9333,27 +9312,24 @@ relationship: part_of MS:1001000 ! spectrum interpretation
|
9333
|
9312
|
[Term]
|
9334
|
9313
|
id: MS:1001472
|
9335
|
9314
|
name: selected ion monitoring chromatogram
|
9336
|
|
-def: "Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point." [PSI:MS]
|
|
9315
|
+def: "Representation of an array of the measurements of a selectively monitored ion versus time." [PSI:MS]
|
9337
|
9316
|
synonym: "SIM chromatogram" EXACT []
|
9338
|
|
-is_a: MS:1000524 ! data file content
|
9339
|
|
-is_a: MS:1000810 ! mass chromatogram
|
|
9317
|
+is_a: MS:1000810 ! ion current chromatogram
|
9340
|
9318
|
|
9341
|
9319
|
[Term]
|
9342
|
9320
|
id: MS:1001473
|
9343
|
9321
|
name: selected reaction monitoring chromatogram
|
9344
|
|
-def: "Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point." [PSI:MS]
|
|
9322
|
+def: "Representation of an array of the measurements of a selectively monitored reaction versus time." [PSI:MS]
|
9345
|
9323
|
synonym: "SRM chromatogram" EXACT []
|
9346
|
|
-is_a: MS:1000524 ! data file content
|
9347
|
|
-is_a: MS:1000810 ! mass chromatogram
|
|
9324
|
+is_a: MS:1000810 ! ion current chromatogram
|
9348
|
9325
|
|
9349
|
9326
|
[Term]
|
9350
|
9327
|
id: MS:1001474
|
9351
|
9328
|
name: consecutive reaction monitoring chromatogram
|
9352
|
|
-def: "OBSOLETE Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point." [PSI:MS]
|
|
9329
|
+def: "OBSOLETE Representation of an array of the measurements of a series of monitored reactions versus time." [PSI:MS]
|
9353
|
9330
|
comment: This term was made obsolete because, by design, it can't be properly represented in mzML 1.1. CRM experiments must be represented in a spectrum-centric way.
|
9354
|
9331
|
synonym: "CRM chromatogram" EXACT []
|
9355
|
|
-is_a: MS:1000524 ! data file content
|
9356
|
|
-is_a: MS:1000810 ! mass chromatogram
|
|
9332
|
+is_a: MS:1000810 ! ion current chromatogram
|
9357
|
9333
|
is_obsolete: true
|
9358
|
9334
|
|
9359
|
9335
|
[Term]
|
...
|
...
|
@@ -10035,7 +10011,7 @@ id: MS:1001581
|
10035
|
10011
|
name: FAIMS compensation voltage
|
10036
|
10012
|
def: "The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion." [PSI:MS]
|
10037
|
10013
|
synonym: "FAIMS CV" EXACT []
|
10038
|
|
-is_a: MS:1000503 ! scan attribute
|
|
10014
|
+is_a: MS:1002892 ! ion mobility attribute
|
10039
|
10015
|
|
10040
|
10016
|
[Term]
|
10041
|
10017
|
id: MS:1001582
|
...
|
...
|
@@ -11385,8 +11361,8 @@ is_a: MS:1000126 ! Waters instrument model
|
11385
|
11361
|
|
11386
|
11362
|
[Term]
|
11387
|
11363
|
id: MS:1001767
|
11388
|
|
-name: nanoACQUITY UPLC System with Technology
|
11389
|
|
-def: "Waters LC-system nanoACQUITY UPLC System with Technology." [PSI:MS]
|
|
11364
|
+name: nanoACQUITY UPLC System with 1D Technology
|
|
11365
|
+def: "Waters LC-system nanoACQUITY UPLC System with 1D Technology." [PSI:MS]
|
11390
|
11366
|
is_a: MS:1000126 ! Waters instrument model
|
11391
|
11367
|
|
11392
|
11368
|
[Term]
|
...
|
...
|
@@ -11518,7 +11494,7 @@ is_a: MS:1000126 ! Waters instrument model
|
11518
|
11494
|
[Term]
|
11519
|
11495
|
id: MS:1001789
|
11520
|
11496
|
name: Quattro micro GC
|
11521
|
|
-def: "Waters quadrupole based Quattro micro GC." [PSI:MS]
|
|
11497
|
+def: "Waters (triple) quadrupole based Quattro micro GC." [PSI:MS]
|
11522
|
11498
|
is_a: MS:1000126 ! Waters instrument model
|
11523
|
11499
|
|
11524
|
11500
|
[Term]
|
...
|
...
|
@@ -11556,8 +11532,8 @@ is_a: MS:1001457 ! data processing software
|
11556
|
11532
|
|
11557
|
11533
|
[Term]
|
11558
|
11534
|
id: MS:1001796
|
11559
|
|
-name: Unify
|
11560
|
|
-def: "Waters Unify software for liquid chromatography and mass spectrometry acquisition." [PSI:MS]
|
|
11535
|
+name: UNIFY
|
|
11536
|
+def: "Waters UNIFY software for liquid chromatography and mass spectrometry acquisition." [PSI:MS]
|
11561
|
11537
|
is_a: MS:1000694 ! Waters software
|
11562
|
11538
|
is_a: MS:1001456 ! analysis software
|
11563
|
11539
|
is_a: MS:1001457 ! data processing software
|
...
|
...
|
@@ -11618,7 +11594,7 @@ is_a: MS:1001800 ! LECO instrument model
|
11618
|
11594
|
[Term]
|
11619
|
11595
|
id: MS:1001805
|
11620
|
11596
|
name: quantification datatype
|
11621
|
|
-def: "The data type of the value reported in a QuantLayer for a feature, peptide, protein, protein group." [PSI:MS]
|
|
11597
|
+def: "The data type of the value reported in a QuantLayer." [PSI:MS]
|
11622
|
11598
|
is_a: MS:1001129 ! quantification information
|
11623
|
11599
|
|
11624
|
11600
|
[Term]
|
...
|
...
|
@@ -11817,7 +11793,7 @@ is_a: MS:1001833 ! quantitation analysis summary
|
11817
|
11793
|
[Term]
|
11818
|
11794
|
id: MS:1001837
|
11819
|
11795
|
name: iTRAQ quantitation analysis
|
11820
|
|
-def: "Quantification analysis using the SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near 114 m/z." [PSI:PI]
|
|
11796
|
+def: "Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range." [PSI:PI, PMID:15385600]
|
11821
|
11797
|
is_a: MS:1002009 ! isobaric label quantitation analysis
|
11822
|
11798
|
|
11823
|
11799
|
[Term]
|
...
|
...
|
@@ -11837,35 +11813,35 @@ id: MS:1001840
|
11837
|
11813
|
name: LC-MS feature intensity
|
11838
|
11814
|
def: "Maximum peak intensity of the LC-MS feature." [PSI:PI]
|
11839
|
11815
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11840
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11816
|
+is_a: MS:1002735 ! feature-level quantification datatype
|
11841
|
11817
|
|
11842
|
11818
|
[Term]
|
11843
|
11819
|
id: MS:1001841
|
11844
|
11820
|
name: LC-MS feature volume
|
11845
|
11821
|
def: "Real (intensity times area) volume of the LC-MS feature." [PSI:PI]
|
11846
|
11822
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11847
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11823
|
+is_a: MS:1002735 ! feature-level quantification datatype
|
11848
|
11824
|
|
11849
|
11825
|
[Term]
|
11850
|
11826
|
id: MS:1001842
|
11851
|
|
-name: peptide PSM count
|
11852
|
|
-def: "The number of MS2 spectra identified for this peptide in spectral counting." [PSI:PI]
|
|
11827
|
+name: sequence-level spectral count
|
|
11828
|
+def: "The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting." [PSI:PI]
|
11853
|
11829
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
11854
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11830
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
11855
|
11831
|
|
11856
|
11832
|
[Term]
|
11857
|
11833
|
id: MS:1001843
|
11858
|
11834
|
name: MS1 feature maximum intensity
|
11859
|
11835
|
def: "Maximum intensity of MS1 feature." [PSI:PI]
|
11860
|
11836
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11861
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11837
|
+is_a: MS:1002735 ! feature-level quantification datatype
|
11862
|
11838
|
|
11863
|
11839
|
[Term]
|
11864
|
11840
|
id: MS:1001844
|
11865
|
11841
|
name: MS1 feature area
|
11866
|
11842
|
def: "Area of MS1 feature." [PSI:PI]
|
11867
|
11843
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11868
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11844
|
+is_a: MS:1002735 ! feature-level quantification datatype
|
11869
|
11845
|
|
11870
|
11846
|
[Term]
|
11871
|
11847
|
id: MS:1001845
|
...
|
...
|
@@ -11902,7 +11878,7 @@ name: sum of MatchedFeature values
|
11902
|
11878
|
def: "OBSOLETE Peptide quantification value calculated as sum of MatchedFeature quantification values." [PSI:PI]
|
11903
|
11879
|
comment: This term was made obsolete because the concept MatchedFeature was dropped.
|
11904
|
11880
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11905
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11881
|
+is_a: MS:1002735 ! feature-level quantification datatype
|
11906
|
11882
|
is_obsolete: true
|
11907
|
11883
|
|
11908
|
11884
|
[Term]
|
...
|
...
|
@@ -11910,21 +11886,21 @@ id: MS:1001850
|
11910
|
11886
|
name: normalized peptide value
|
11911
|
11887
|
def: "Normalized peptide value." [PSI:PI]
|
11912
|
11888
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11913
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11889
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
11914
|
11890
|
|
11915
|
11891
|
[Term]
|
11916
|
11892
|
id: MS:1001851
|
11917
|
11893
|
name: protein value: sum of peptide values
|
11918
|
11894
|
def: "Protein quantification value calculated as sum of peptide values." [PSI:PI]
|
11919
|
11895
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11920
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11896
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
11921
|
11897
|
|
11922
|
11898
|
[Term]
|
11923
|
11899
|
id: MS:1001852
|
11924
|
11900
|
name: normalized protein value
|
11925
|
11901
|
def: "Normalized protein value." [PSI:PI]
|
11926
|
11902
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11927
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11903
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
11928
|
11904
|
|
11929
|
11905
|
[Term]
|
11930
|
11906
|
id: MS:1001853
|
...
|
...
|
@@ -11980,7 +11956,7 @@ id: MS:1001860
|
11980
|
11956
|
name: protein value: mean of peptide ratios
|
11981
|
11957
|
def: "Protein quantification value calculated as mean of peptide ratios." [PSI:PI]
|
11982
|
11958
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
11983
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
11959
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
11984
|
11960
|
|
11985
|
11961
|
[Term]
|
11986
|
11962
|
id: MS:1001861
|
...
|
...
|
@@ -12078,7 +12054,7 @@ name: FDRScore
|
12078
|
12054
|
def: "OBSOLETE A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0." [PMID:19253293]
|
12079
|
12055
|
comment: This term was made obsolete because it was split into the more specific terms for PSM-level FDRScore (1002355), distinct peptide-level FDRScore (MS:1002360), protein-level FDRScore (MS:1002365) and protein group-level FDRScore (MS:1002374).
|
12080
|
12056
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12081
|
|
-is_a: MS:1001143 ! search engine specific score for PSMs
|
|
12057
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
12082
|
12058
|
is_a: MS:1001153 ! search engine specific score
|
12083
|
12059
|
is_obsolete: true
|
12084
|
12060
|
|
...
|
...
|
@@ -12108,9 +12084,6 @@ is_a: MS:1001798 ! LECO software
|
12108
|
12084
|
id: MS:1001878
|
12109
|
12085
|
name: MALDI Solutions Microbial Identification
|
12110
|
12086
|
def: "Shimadzu Biotech software for data acquisition, processing, and analysis." [PSI:MS]
|
12111
|
|
-is_a: MS:1001455 ! acquisition software
|
12112
|
|
-is_a: MS:1001456 ! analysis software
|
12113
|
|
-is_a: MS:1001457 ! data processing software
|
12114
|
12087
|
is_a: MS:1001558 ! MALDI Solutions
|
12115
|
12088
|
|
12116
|
12089
|
[Term]
|
...
|
...
|
@@ -12190,28 +12163,28 @@ id: MS:1001890
|
12190
|
12163
|
name: Progenesis:protein normalised abundance
|
12191
|
12164
|
def: "The data type normalised abundance for proteins produced by Progenesis LC-MS." [PSI:MS]
|
12192
|
12165
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12193
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12166
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
12194
|
12167
|
|
12195
|
12168
|
[Term]
|
12196
|
12169
|
id: MS:1001891
|
12197
|
12170
|
name: Progenesis:peptide normalised abundance
|
12198
|
12171
|
def: "The data type normalised abundance for peptides produced by Progenesis LC-MS." [PSI:MS]
|
12199
|
12172
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12200
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12173
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
12201
|
12174
|
|
12202
|
12175
|
[Term]
|
12203
|
12176
|
id: MS:1001892
|
12204
|
12177
|
name: Progenesis:protein raw abundance
|
12205
|
12178
|
def: "The data type raw abundance for proteins produced by Progenesis LC-MS." [PSI:MS]
|
12206
|
12179
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12207
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12180
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
12208
|
12181
|
|
12209
|
12182
|
[Term]
|
12210
|
12183
|
id: MS:1001893
|
12211
|
12184
|
name: Progenesis:peptide raw abundance
|
12212
|
12185
|
def: "The data type raw abundance for peptide produced by Progenesis LC-MS." [PSI:MS]
|
12213
|
12186
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12214
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12187
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
12215
|
12188
|
|
12216
|
12189
|
[Term]
|
12217
|
12190
|
id: MS:1001894
|
...
|
...
|
@@ -12225,42 +12198,42 @@ id: MS:1001895
|
12225
|
12198
|
name: Progenesis:peptide count
|
12226
|
12199
|
def: "The data type peptide count produced by Progenesis LC-MS." [PSI:MS]
|
12227
|
12200
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
12228
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12201
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
12229
|
12202
|
|
12230
|
12203
|
[Term]
|
12231
|
12204
|
id: MS:1001896
|
12232
|
12205
|
name: Progenesis:feature intensity
|
12233
|
12206
|
def: "The data type feature intensity produced by Progenesis LC-MS." [PSI:MS]
|
12234
|
12207
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12235
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12208
|
+is_a: MS:1002735 ! feature-level quantification datatype
|
12236
|
12209
|
|
12237
|
12210
|
[Term]
|
12238
|
12211
|
id: MS:1001897
|
12239
|
12212
|
name: MaxQuant:peptide counts (unique)
|
12240
|
12213
|
def: "The data type peptide counts (unique) produced by MaxQuant." [PSI:MS]
|
12241
|
12214
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
12242
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12215
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
12243
|
12216
|
|
12244
|
12217
|
[Term]
|
12245
|
12218
|
id: MS:1001898
|
12246
|
12219
|
name: MaxQuant:peptide counts (all)
|
12247
|
12220
|
def: "The data type peptide counts (all) produced by MaxQuant." [PSI:MS]
|
12248
|
12221
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
12249
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12222
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
12250
|
12223
|
|
12251
|
12224
|
[Term]
|
12252
|
12225
|
id: MS:1001899
|
12253
|
12226
|
name: MaxQuant:peptide counts (razor+unique)
|
12254
|
12227
|
def: "The data type peptide counts (razor+unique) produced by MaxQuant." [PSI:MS]
|
12255
|
12228
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
12256
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12229
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
12257
|
12230
|
|
12258
|
12231
|
[Term]
|
12259
|
12232
|
id: MS:1001900
|
12260
|
12233
|
name: MaxQuant:sequence length
|
12261
|
12234
|
def: "The data type sequence length produced by MaxQuant." [PSI:MS]
|
12262
|
12235
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
12263
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12236
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
12264
|
12237
|
|
12265
|
12238
|
[Term]
|
12266
|
12239
|
id: MS:1001901
|
...
|
...
|
@@ -12281,7 +12254,7 @@ id: MS:1001903
|
12281
|
12254
|
name: MaxQuant:feature intensity
|
12282
|
12255
|
def: "The data type feature intensity produced by MaxQuant." [PSI:MS]
|
12283
|
12256
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12284
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12257
|
+is_a: MS:1002735 ! feature-level quantification datatype
|
12285
|
12258
|
|
12286
|
12259
|
[Term]
|
12287
|
12260
|
id: MS:1001904
|
...
|
...
|
@@ -12295,14 +12268,14 @@ id: MS:1001905
|
12295
|
12268
|
name: emPAI value
|
12296
|
12269
|
def: "The emPAI value of protein abundance, produced from the emPAI algorithm." [PSI:MS]
|
12297
|
12270
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12298
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12271
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
12299
|
12272
|
|
12300
|
12273
|
[Term]
|
12301
|
12274
|
id: MS:1001906
|
12302
|
12275
|
name: APEX value
|
12303
|
12276
|
def: "The APEX value of protein abundance, produced from the APEX software." [PSI:MS]
|
12304
|
12277
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
12305
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
12278
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
12306
|
12279
|
|
12307
|
12280
|
[Term]
|
12308
|
12281
|
id: MS:1001907
|
...
|
...
|
@@ -12417,7 +12390,7 @@ id: MS:1001923
|
12417
|
12390
|
name: external reference keyword
|
12418
|
12391
|
def: "Free text attribute that can enrich the information about an entity." [PSI:PI]
|
12419
|
12392
|
xref: value-type:xsd\:string "The allowed value-type for this CV term."
|
12420
|
|
-is_a: MS:1000878 ! external reference identifier
|
|
12393
|
+is_a: MS:1002840 ! external reference data
|
12421
|
12394
|
|
12422
|
12395
|
[Term]
|
12423
|
12396
|
id: MS:1001924
|
...
|
...
|
@@ -13015,8 +12988,7 @@ is_a: MS:1001833 ! quantitation analysis summary
|
13015
|
12988
|
[Term]
|
13016
|
12989
|
id: MS:1002010
|
13017
|
12990
|
name: TMT quantitation analysis
|
13018
|
|
-def: "Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labelling workflow." [PSI:PI]
|
13019
|
|
-is_a: MS:1001833 ! quantitation analysis summary
|
|
12991
|
+def: "Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z." [PSI:PI, PMID:12713048]
|
13020
|
12992
|
is_a: MS:1002009 ! isobaric label quantitation analysis
|
13021
|
12993
|
|
13022
|
12994
|
[Term]
|
...
|
...
|
@@ -13206,9 +13178,9 @@ is_a: MS:1002033 ! contact role
|
13206
|
13178
|
|
13207
|
13179
|
[Term]
|
13208
|
13180
|
id: MS:1002038
|
13209
|
|
-name: unlabeled sample
|
|
13181
|
+name: label free sample
|
13210
|
13182
|
def: "A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\"." [PSI:PI]
|
13211
|
|
-synonym: "light labeled sample" EXACT []
|
|
13183
|
+synonym: "light sample" EXACT []
|
13212
|
13184
|
is_a: MS:1000548 ! sample attribute
|
13213
|
13185
|
|
13214
|
13186
|
[Term]
|
...
|
...
|
@@ -13395,14 +13367,14 @@ id: MS:1002064
|
13395
|
13367
|
name: peptide consensus RT
|
13396
|
13368
|
def: "Peptide consensus retention time." [PSI:PI]
|
13397
|
13369
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
13398
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
13370
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
13399
|
13371
|
|
13400
|
13372
|
[Term]
|
13401
|
13373
|
id: MS:1002065
|
13402
|
13374
|
name: peptide consensus m/z
|
13403
|
13375
|
def: "Peptide consensus mass/charge ratio." [PSI:PI]
|
13404
|
13376
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
13405
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
13377
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
13406
|
13378
|
|
13407
|
13379
|
[Term]
|
13408
|
13380
|
id: MS:1002066
|
...
|
...
|
@@ -13416,7 +13388,7 @@ id: MS:1002067
|
13416
|
13388
|
name: protein value: median of peptide ratios
|
13417
|
13389
|
def: "Protein quantification value calculated as median of peptide ratios." [PSI:PI]
|
13418
|
13390
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
13419
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
13391
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
13420
|
13392
|
|
13421
|
13393
|
[Term]
|
13422
|
13394
|
id: MS:1002068
|
...
|
...
|
@@ -13957,7 +13929,7 @@ id: MS:1002153
|
13957
|
13929
|
name: protein level PSM counts
|
13958
|
13930
|
def: "The number of spectra identified for this protein in spectral counting." [PSI:PI]
|
13959
|
13931
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
13960
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
13932
|
+is_a: MS:1002738 ! protein-level quantification datatype
|
13961
|
13933
|
|
13962
|
13934
|
[Term]
|
13963
|
13935
|
id: MS:1002154
|
...
|
...
|
@@ -14311,7 +14283,7 @@ is_a: MS:1001861 ! quantification data processing
|
14311
|
14283
|
[Term]
|
14312
|
14284
|
id: MS:1002212
|
14313
|
14285
|
name: IPTL quantitation analysis
|
14314
|
|
-def: "Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric." [PSI:PI]
|
|
14286
|
+def: "Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric." [PSI:PI, PMID:19655813]
|
14315
|
14287
|
is_a: MS:1002009 ! isobaric label quantitation analysis
|
14316
|
14288
|
|
14317
|
14289
|
[Term]
|
...
|
...
|
@@ -14707,7 +14679,7 @@ id: MS:1002268
|
14707
|
14679
|
name: Byonic:Best LogProb
|
14708
|
14680
|
def: "Best (most negative) log p-value of an individual PSM." [PSI:PI]
|
14709
|
14681
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
14710
|
|
-is_a: MS:1001116 ! single protein result details
|
|
14682
|
+is_a: MS:1001116 ! single protein identification statistic
|
14711
|
14683
|
is_a: MS:1001153 ! search engine specific score
|
14712
|
14684
|
relationship: has_order MS:1002109 ! lower score better
|
14713
|
14685
|
|
...
|
...
|
@@ -14766,7 +14738,7 @@ is_a: MS:1000126 ! Waters instrument model
|
14766
|
14738
|
[Term]
|
14767
|
14739
|
id: MS:1002277
|
14768
|
14740
|
name: AutoSpec Premier
|
14769
|
|
-def: "Waters AutoSpec Premier." [PSI:MS]
|
|
14741
|
+def: "Waters AutoSpec Premier magnetic sector instrument." [PSI:MS]
|
14770
|
14742
|
is_a: MS:1000126 ! Waters instrument model
|
14771
|
14743
|
|
14772
|
14744
|
[Term]
|
...
|
...
|
@@ -14835,6 +14807,7 @@ is_a: MS:1002286 ! Trans-Proteomic Pipeline software
|
14835
|
14807
|
id: MS:1002288
|
14836
|
14808
|
name: iProphet
|
14837
|
14809
|
def: "A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format." [PMID:21876204]
|
|
14810
|
+synonym: "InterProphet" EXACT []
|
14838
|
14811
|
is_a: MS:1002286 ! Trans-Proteomic Pipeline software
|
14839
|
14812
|
|
14840
|
14813
|
[Term]
|
...
|
...
|
@@ -14985,19 +14958,19 @@ relationship: has_order MS:1002108 ! higher score better
|
14985
|
14958
|
[Term]
|
14986
|
14959
|
id: MS:1002312
|
14987
|
14960
|
name: MS-Numpress linear prediction compression
|
14988
|
|
-def: "Compression using MS-Numpress linear prediction compression." [https://github.com/fickludd/ms-numpress]
|
|
14961
|
+def: "Compression using MS-Numpress linear prediction compression." [https://github.com/ms-numpress/ms-numpress]
|
14989
|
14962
|
is_a: MS:1000572 ! binary data compression type
|
14990
|
14963
|
|
14991
|
14964
|
[Term]
|
14992
|
14965
|
id: MS:1002313
|
14993
|
14966
|
name: MS-Numpress positive integer compression
|
14994
|
|
-def: "Compression using MS-Numpress positive integer compression." [https://github.com/fickludd/ms-numpress]
|
|
14967
|
+def: "Compression using MS-Numpress positive integer compression." [https://github.com/ms-numpress/ms-numpress]
|
14995
|
14968
|
is_a: MS:1000572 ! binary data compression type
|
14996
|
14969
|
|
14997
|
14970
|
[Term]
|
14998
|
14971
|
id: MS:1002314
|
14999
|
14972
|
name: MS-Numpress short logged float compression
|
15000
|
|
-def: "Compression using MS-Numpress short logged float compression." [https://github.com/fickludd/ms-numpress]
|
|
14973
|
+def: "Compression using MS-Numpress short logged float compression." [https://github.com/ms-numpress/ms-numpress]
|
15001
|
14974
|
is_a: MS:1000572 ! binary data compression type
|
15002
|
14975
|
|
15003
|
14976
|
[Term]
|
...
|
...
|
@@ -15139,14 +15112,12 @@ id: MS:1002334
|
15139
|
15112
|
name: ProCon
|
15140
|
15113
|
def: "Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML." [PSI:PI, http://www.medizinisches-proteom-center.de/procon]
|
15141
|
15114
|
is_a: MS:1002333 ! conversion software
|
15142
|
|
-is_a: MS:1001457 ! data processing software
|
15143
|
15115
|
|
15144
|
15116
|
[Term]
|
15145
|
15117
|
id: MS:1002335
|
15146
|
15118
|
name: PRIDE Converter2
|
15147
|
15119
|
def: "Java software designed to convert one of several proteomics identification results formats into PRIDE XML." [PMID:22949509]
|
15148
|
15120
|
is_a: MS:1002333 ! conversion software
|
15149
|
|
-is_a: MS:1001457 ! data processing software
|
15150
|
15121
|
|
15151
|
15122
|
[Term]
|
15152
|
15123
|
id: MS:1002336
|
...
|
...
|
@@ -15200,7 +15171,7 @@ is_a: MS:1001457 ! data processing software
|
15200
|
15171
|
id: MS:1002343
|
15201
|
15172
|
name: ion stability type
|
15202
|
15173
|
def: "OBSOLETE Stability type of the ion." [PSI:PI]
|
15203
|
|
-comment: This child of the former purgatory term ion? was made obsolete.
|
|
15174
|
+comment: This child of the former purgatory term ion was made obsolete.
|
15204
|
15175
|
is_obsolete: true
|
15205
|
15176
|
|
15206
|
15177
|
[Term]
|
...
|
...
|
@@ -15323,7 +15294,7 @@ relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive
|
15323
|
15294
|
[Term]
|
15324
|
15295
|
id: MS:1002360
|
15325
|
15296
|
name: distinct peptide-level FDRScore
|
15326
|
|
-def: "mzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)." [PSI:PI]
|
|
15297
|
+def: "MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry)." [PSI:PI]
|
15327
|
15298
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
15328
|
15299
|
is_a: MS:1002358 ! search engine specific peptide sequence-level identification statistic
|
15329
|
15300
|
is_a: MS:1002363 ! search engine specific score for proteins
|
...
|
...
|
@@ -15362,7 +15333,7 @@ is_a: MS:1001116 ! single protein identification statistic
|
15362
|
15333
|
[Term]
|
15363
|
15334
|
id: MS:1002365
|
15364
|
15335
|
name: FDRScore for proteins
|
15365
|
|
-def: "mzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools." [PSI:PI]
|
|
15336
|
+def: "MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools." [PSI:PI]
|
15366
|
15337
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
15367
|
15338
|
is_a: MS:1002363 ! search engine specific score for proteins
|
15368
|
15339
|
relationship: has_domain MS:1002349 ! value greater than zero but less than or equal to one
|
...
|
...
|
@@ -15370,7 +15341,7 @@ relationship: has_domain MS:1002349 ! value greater than zero but less than or e
|
15370
|
15341
|
[Term]
|
15371
|
15342
|
id: MS:1002366
|
15372
|
15343
|
name: combined FDRScore for proteins
|
15373
|
|
-def: "mzidLibrary Combined FDRScore for proteins." [PSI:PI]
|
|
15344
|
+def: "MzidLibrary Combined FDRScore for proteins." [PSI:PI]
|
15374
|
15345
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
15375
|
15346
|
is_a: MS:1002363 ! search engine specific score for proteins
|
15376
|
15347
|
relationship: has_domain MS:1002349 ! value greater than zero but less than or equal to one
|
...
|
...
|
@@ -15526,7 +15497,6 @@ name: PIA
|
15526
|
15497
|
def: "PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis." [PSI:PI, http://www.medizinisches-proteom-center.de/pia]
|
15527
|
15498
|
is_a: MS:1002414 ! postprocessing software
|
15528
|
15499
|
is_a: MS:1001456 ! analysis software
|
15529
|
|
-is_a: MS:1001457 ! data processing software
|
15530
|
15500
|
|
15531
|
15501
|
[Term]
|
15532
|
15502
|
id: MS:1002388
|
...
|
...
|
@@ -15669,7 +15639,7 @@ id: MS:1002408
|
15669
|
15639
|
name: number of distinct protein sequences
|
15670
|
15640
|
def: "The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file." [PSI:PI]
|
15671
|
15641
|
xref: value-type:xsd\:int "The allowed value-type for this CV term."
|
15672
|
|
-is_a: MS:1002405 ! protein cluster details
|
|
15642
|
+is_a: MS:1002405 ! protein group-level result list attribute
|
15673
|
15643
|
|
15674
|
15644
|
[Term]
|
15675
|
15645
|
id: MS:1002409
|
...
|
...
|
@@ -15695,7 +15665,7 @@ id: MS:1002412
|
15695
|
15665
|
name: total XIC area
|
15696
|
15666
|
def: "Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM)." [PSI:PI]
|
15697
|
15667
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
15698
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
15668
|
+is_a: MS:1002737 ! peptide-level quantification datatype
|
15699
|
15669
|
|
15700
|
15670
|
[Term]
|
15701
|
15671
|
id: MS:1002413
|
...
|
...
|
@@ -15848,7 +15818,7 @@ is_a: MS:1001249 ! search input details
|
15848
|
15818
|
id: MS:1002435
|
15849
|
15819
|
name: data processing start time
|
15850
|
15820
|
def: "The time that a data processing action was started." [PSI:MS]
|
15851
|
|
-xref: value-type:xsd\:date "The allowed value-type for this CV term."
|
|
15821
|
+xref: value-type:xsd\:dateTime "The allowed value-type for this CV term."
|
15852
|
15822
|
is_a: MS:1000630 ! data processing parameter
|
15853
|
15823
|
|
15854
|
15824
|
[Term]
|
...
|
...
|
@@ -16132,6 +16102,7 @@ name: ion mobility drift time
|
16132
|
16102
|
def: "Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated." [PSI:MS]
|
16133
|
16103
|
xref: value-type:xsd\:float "The allowed value-type for this CV term."
|
16134
|
16104
|
is_a: MS:1000455 ! ion selection attribute
|
|
16105
|
+is_a: MS:1002892 ! ion mobility attribute
|
16135
|
16106
|
relationship: has_units UO:0000028 ! millisecond
|
16136
|
16107
|
|
16137
|
16108
|
[Term]
|
...
|
...
|
@@ -16139,7 +16110,7 @@ id: MS:1002477
|
16139
|
16110
|
name: mean drift time array
|
16140
|
16111
|
def: "Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array." [PSI:MS]
|
16141
|
16112
|
xref: value-type:xsd\:float "The allowed value-type for this CV term."
|
16142
|
|
-is_a: MS:1000513 ! binary data array
|
|
16113
|
+is_a: MS:1002893 ! ion mobility array
|
16143
|
16114
|
relationship: has_units UO:0000028 ! millisecond
|
16144
|
16115
|
relationship: has_units UO:0000010 ! second
|
16145
|
16116
|
|
...
|
...
|
@@ -16159,7 +16130,7 @@ relationship: part_of MS:0000000 ! Proteomics Standards Initiative Mass Spectrom
|
16159
|
16130
|
[Term]
|
16160
|
16131
|
id: MS:1002480
|
16161
|
16132
|
name: regular expression for a digital object identifier (DOI)
|
16162
|
|
-def: "(10[.][0-9]\{4,\}(?:[.][0-9]+)*/(?:(?![\"&\'<>])[^ \t\\r\n\\v\\f])+)" [PSI:PI, http://dx.doi.org/]
|
|
16133
|
+def: "(10[.][0-9]\{4,\}(?:[.][0-9]+)*/(?:(?![\"&\'<>])[^ \t\\r\n\\v\\f])+)." [PSI:PI, http://dx.doi.org/]
|
16163
|
16134
|
is_a: MS:1002479 ! regular expression
|
16164
|
16135
|
|
16165
|
16136
|
[Term]
|
...
|
...
|
@@ -16278,7 +16249,7 @@ id: MS:1002499
|
16278
|
16249
|
name: peptide level score
|
16279
|
16250
|
def: "OBSOLETE Peptide level score." [PSI:PI]
|
16280
|
16251
|
comment: This term was obsoleted because it was never intended to go in the CV.
|
16281
|
|
-is_a: MS:1002358 ! search engine specific score for distinct peptides
|
|
16252
|
+is_a: MS:1002358 ! search engine specific peptide sequence-level identification statistic
|
16282
|
16253
|
is_obsolete: true
|
16283
|
16254
|
|
16284
|
16255
|
[Term]
|
...
|
...
|
@@ -16316,7 +16287,7 @@ is_a: MS:1001055 ! modification parameters
|
16316
|
16287
|
[Term]
|
16317
|
16288
|
id: MS:1002505
|
16318
|
16289
|
name: regular expression for modification localization scoring
|
16319
|
|
-def: "([:digit:]+:[0|1]\{1\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\{1\}[:digit:]+:(true|false)\{1\})" [PSI:PI]
|
|
16290
|
+def: "([:digit:]+:[0|1]\{1\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\{1\}[:digit:]+:(true|false)\{1\})." [PSI:PI]
|
16320
|
16291
|
is_a: MS:1002479 ! regular expression
|
16321
|
16292
|
|
16322
|
16293
|
[Term]
|
...
|
...
|
@@ -16406,14 +16377,14 @@ id: MS:1002518
|
16406
|
16377
|
name: Progenesis:protein group normalised abundance
|
16407
|
16378
|
def: "The data type normalised abundance for protein groups produced by Progenesis LC-MS." [PSI:PI]
|
16408
|
16379
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
16409
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
16380
|
+is_a: MS:1002739 ! protein group-level quantification datatype
|
16410
|
16381
|
|
16411
|
16382
|
[Term]
|
16412
|
16383
|
id: MS:1002519
|
16413
|
16384
|
name: Progenesis:protein group raw abundance
|
16414
|
16385
|
def: "The data type raw abundance for protein groups produced by Progenesis LC-MS." [PSI:PI]
|
16415
|
16386
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
16416
|
|
-is_a: MS:1001805 ! quantification datatype
|
|
16387
|
+is_a: MS:1002739 ! protein group-level quantification datatype
|
16417
|
16388
|
|
16418
|
16389
|
[Term]
|
16419
|
16390
|
id: MS:1002520
|
...
|
...
|
@@ -16524,7 +16495,7 @@ is_a: MS:1001143 ! PSM-level search engine specific statistic
|
16524
|
16495
|
[Term]
|
16525
|
16496
|
id: MS:1002536
|
16526
|
16497
|
name: D-Score
|
16527
|
|
-def: "D-Score for PTM site location at the PSM-level." [DOI:10.1002/pmic.201200408, PMID:23307401]
|
|
16498
|
+def: "D-Score for PTM site location at the PSM-level." [PMID:23307401]
|
16528
|
16499
|
xref: value-type:xsd\:string "The allowed value-type for this CV term."
|
16529
|
16500
|
is_a: MS:1001968 ! PTM localization PSM-level statistic
|
16530
|
16501
|
relationship: has_regexp MS:1002505 ! regular expression for modification localization scoring
|
...
|
...
|
@@ -16532,7 +16503,7 @@ relationship: has_regexp MS:1002505 ! regular expression for modification locali
|
16532
|
16503
|
[Term]
|
16533
|
16504
|
id: MS:1002537
|
16534
|
16505
|
name: MD-Score
|
16535
|
|
-def: "MD-Score for PTM site location at the PSM-level." [DOI:10.1074/mcp.M110.003830–1, PMID:21057138]
|
|
16506
|
+def: "MD-Score for PTM site location at the PSM-level." [PMID:21057138]
|
16536
|
16507
|
xref: value-type:xsd\:string "The allowed value-type for this CV term."
|
16537
|
16508
|
is_a: MS:1001968 ! PTM localization PSM-level statistic
|
16538
|
16509
|
relationship: has_regexp MS:1002505 ! regular expression for modification localization scoring
|
...
|
...
|
@@ -16608,7 +16579,7 @@ is_a: MS:1001805 ! quantification datatype
|
16608
|
16579
|
[Term]
|
16609
|
16580
|
id: MS:1002548
|
16610
|
16581
|
name: distributed normalized spectral abundance factor
|
16611
|
|
-def: "A distributed normalized spectral abundance factor (dNSAF." [DOI:10.1021/ac9023999, PMID:20166708]
|
|
16582
|
+def: "A distributed normalized spectral abundance factor (dNSAF)." [DOI:10.1021/ac9023999, PMID:20166708]
|
16612
|
16583
|
is_a: MS:1001805 ! quantification datatype
|
16613
|
16584
|
|
16614
|
16585
|
[Term]
|
...
|
...
|
@@ -16801,7 +16772,7 @@ is_a: MS:1001456 ! analysis software
|
16801
|
16772
|
|
16802
|
16773
|
[Term]
|
16803
|
16774
|
id: MS:1002576
|
16804
|
|
-name: Andromeda result file
|
|
16775
|
+name: Andromeda result format
|
16805
|
16776
|
def: "Andromeda result file output format." [PSI:PI]
|
16806
|
16777
|
is_a: MS:1001040 ! intermediate analysis format
|
16807
|
16778
|
|
...
|
...
|
@@ -16940,7 +16911,7 @@ is_a: MS:1001456 ! analysis software
|
16940
|
16911
|
[Term]
|
16941
|
16912
|
id: MS:1002599
|
16942
|
16913
|
name: splash key
|
16943
|
|
-def: "The Splash, is an unique identifier for Spectra, as the InChI Key is an unique identifier for chemical compounds." [http://splash.fiehnlab.ucdavis.edu/]
|
|
16914
|
+def: "Spectral Hash key, an unique identifier for spectra." [PMID:27824832]
|
16944
|
16915
|
xref: value-type:xsd\:string "The allowed value-type for this CV term."
|
16945
|
16916
|
is_a: MS:1001405 ! spectrum identification result details
|
16946
|
16917
|
|
...
|
...
|
@@ -16959,7 +16930,7 @@ is_a: MS:1000914 ! tab delimited text format
|
16959
|
16930
|
|
16960
|
16931
|
[Term]
|
16961
|
16932
|
id: MS:1002602
|
16962
|
|
-name: quantification reagent
|
|
16933
|
+name: sample label
|
16963
|
16934
|
def: "Reagent used in labeled quantification methods." [PSI:PI]
|
16964
|
16935
|
is_a: MS:1002111 ! assay label attribute
|
16965
|
16936
|
is_a: MS:1000548 ! sample attribute
|
...
|
...
|
@@ -16968,7 +16939,7 @@ is_a: MS:1000548 ! sample attribute
|
16968
|
16939
|
id: MS:1002603
|
16969
|
16940
|
name: ICAT reagent
|
16970
|
16941
|
def: "Isotope coded affinity tag reagent." [PSI:PI]
|
16971
|
|
-is_a: MS:1002602 ! quantification reagent
|
|
16942
|
+is_a: MS:1002602 ! sample label
|
16972
|
16943
|
|
16973
|
16944
|
[Term]
|
16974
|
16945
|
id: MS:1002604
|
...
|
...
|
@@ -16986,7 +16957,7 @@ is_a: MS:1002603 ! ICAT reagent
|
16986
|
16957
|
id: MS:1002606
|
16987
|
16958
|
name: ICPL reagent
|
16988
|
16959
|
def: "Isotope coded protein labeling reagent." [PSI:PI]
|
16989
|
|
-is_a: MS:1002602 ! quantification reagent
|
|
16960
|
+is_a: MS:1002602 ! sample label
|
16990
|
16961
|
|
16991
|
16962
|
[Term]
|
16992
|
16963
|
id: MS:1002607
|
...
|
...
|
@@ -17016,7 +16987,7 @@ is_a: MS:1002606 ! ICPL reagent
|
17016
|
16987
|
id: MS:1002611
|
17017
|
16988
|
name: SILAC reagent
|
17018
|
16989
|
def: "Stable isotope labeling with amino acids in cell culture reagent." [PSI:PI]
|
17019
|
|
-is_a: MS:1002602 ! quantification reagent
|
|
16990
|
+is_a: MS:1002602 ! sample label
|
17020
|
16991
|
|
17021
|
16992
|
[Term]
|
17022
|
16993
|
id: MS:1002612
|
...
|
...
|
@@ -17039,8 +17010,8 @@ is_a: MS:1002611 ! SILAC reagent
|
17039
|
17010
|
[Term]
|
17040
|
17011
|
id: MS:1002615
|
17041
|
17012
|
name: TMT reagent
|
17042
|
|
-def: "Tandem mass tag reagent." [PSI:PI]
|
17043
|
|
-is_a: MS:1002602 ! quantification reagent
|
|
17013
|
+def: "Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling." [PSI:PI]
|
|
17014
|
+is_a: MS:1002602 ! sample label
|
17044
|
17015
|
|
17045
|
17016
|
[Term]
|
17046
|
17017
|
id: MS:1002616
|
...
|
...
|
@@ -17081,8 +17052,8 @@ is_a: MS:1002615 ! TMT reagent
|
17081
|
17052
|
[Term]
|
17082
|
17053
|
id: MS:1002622
|
17083
|
17054
|
name: iTRAQ reagent
|
17084
|
|
-def: "Isobaric tag for relative and absolute quantitation reagent." [PSI:PI]
|
17085
|
|
-is_a: MS:1002602 ! quantification reagent
|
|
17055
|
+def: "Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent." [PSI:PI]
|
|
17056
|
+is_a: MS:1002602 ! sample label
|
17086
|
17057
|
|
17087
|
17058
|
[Term]
|
17088
|
17059
|
id: MS:1002623
|
...
|
...
|
@@ -17378,7 +17349,7 @@ relationship: has_regexp MS:1002665 ! ([:digit:]+[.][a|b]:[:digit:]+:[:digit:]+[
|
17378
|
17349
|
[Term]
|
17379
|
17350
|
id: MS:1002665
|
17380
|
17351
|
name: regular expression for interaction scores derived from cross-linking
|
17381
|
|
-def: "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\{1\}))" [PSI:PI]
|
|
17352
|
+def: "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\{1\}))." [PSI:PI]
|
17382
|
17353
|
is_a: MS:1002479 ! regular expression
|
17383
|
17354
|
|
17384
|
17355
|
[Term]
|
...
|
...
|
@@ -17465,15 +17436,15 @@ relationship: has_regexp MS:1002665 ! ([:digit:]+[.][a|b]:[:digit:]+:[:digit:]+[
|
17465
|
17436
|
|
17466
|
17437
|
[Term]
|
17467
|
17438
|
id: MS:1002678
|
17468
|
|
-name: supplemental higher energy beam-type collision-induced dissociation
|
17469
|
|
-def: "A supplemental collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV." [PSI:MS]
|
|
17439
|
+name: supplemental beam-type collision-induced dissociation
|
|
17440
|
+def: "A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation." [PSI:MS]
|
17470
|
17441
|
is_a: MS:1000422 ! beam-type collision-induced dissociation
|
17471
|
17442
|
|
17472
|
17443
|
[Term]
|
17473
|
17444
|
id: MS:1002679
|
17474
|
17445
|
name: supplemental collision-induced dissociation
|
17475
|
17446
|
def: "The dissociation of an ion after supplemental collisional excitation." [PSI:MS]
|
17476
|
|
-is_a: MS:1000044 ! dissociation method
|
|
17447
|
+is_a: MS:1000133 ! collision-induced dissociation
|
17477
|
17448
|
|
17478
|
17449
|
[Term]
|
17479
|
17450
|
id: MS:1002680
|
...
|
...
|
@@ -17488,7 +17459,7 @@ id: MS:1002681
|
17488
|
17459
|
name: OpenXQuest:combined score
|
17489
|
17460
|
def: "OpenXQuest's combined score for a cross-link spectrum match." [PSI:PI]
|
17490
|
17461
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
17491
|
|
-is_a: MS:1001143 ! search engine specific score for PSMs
|
|
17462
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
17492
|
17463
|
is_a: MS:1001153 ! search engine specific score
|
17493
|
17464
|
relationship: has_order MS:1002108 ! higher score better
|
17494
|
17465
|
|
...
|
...
|
@@ -17497,7 +17468,7 @@ id: MS:1002682
|
17497
|
17468
|
name: OpenXQuest:xcorr xlink
|
17498
|
17469
|
def: "OpenXQuest's cross-correlation of cross-linked ions subscore." [PSI:PI]
|
17499
|
17470
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
17500
|
|
-is_a: MS:1001143 ! search engine specific score for PSMs
|
|
17471
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
17501
|
17472
|
is_a: MS:1001153 ! search engine specific score
|
17502
|
17473
|
relationship: has_order MS:1002108 ! higher score better
|
17503
|
17474
|
|
...
|
...
|
@@ -17506,7 +17477,7 @@ id: MS:1002683
|
17506
|
17477
|
name: OpenXQuest:xcorr common
|
17507
|
17478
|
def: "OpenXQuest's cross-correlation of unlinked ions subscore." [PSI:PI]
|
17508
|
17479
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
17509
|
|
-is_a: MS:1001143 ! search engine specific score for PSMs
|
|
17480
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
17510
|
17481
|
is_a: MS:1001153 ! search engine specific score
|
17511
|
17482
|
relationship: has_order MS:1002108 ! higher score better
|
17512
|
17483
|
|
...
|
...
|
@@ -17515,7 +17486,7 @@ id: MS:1002684
|
17515
|
17486
|
name: OpenXQuest:match-odds
|
17516
|
17487
|
def: "OpenXQuest's match-odds subscore." [PSI:PI]
|
17517
|
17488
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
17518
|
|
-is_a: MS:1001143 ! search engine specific score for PSMs
|
|
17489
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
17519
|
17490
|
is_a: MS:1001153 ! search engine specific score
|
17520
|
17491
|
relationship: has_order MS:1002108 ! higher score better
|
17521
|
17492
|
relationship: has_domain MS:1002306 ! value greater than zero
|
...
|
...
|
@@ -17525,7 +17496,7 @@ id: MS:1002685
|
17525
|
17496
|
name: OpenXQuest:intsum
|
17526
|
17497
|
def: "OpenXQuest's sum of matched peak intensity subscore." [PSI:PI]
|
17527
|
17498
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
17528
|
|
-is_a: MS:1001143 ! search engine specific score for PSMs
|
|
17499
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
17529
|
17500
|
is_a: MS:1001153 ! search engine specific score
|
17530
|
17501
|
relationship: has_order MS:1002108 ! higher score better
|
17531
|
17502
|
relationship: has_domain MS:1002306 ! value greater than zero
|
...
|
...
|
@@ -17535,7 +17506,7 @@ id: MS:1002686
|
17535
|
17506
|
name: OpenXQuest:wTIC
|
17536
|
17507
|
def: "OpenXQuest's weighted percent of total ion current subscore." [PSI:PI]
|
17537
|
17508
|
xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
17538
|
|
-is_a: MS:1001143 ! search engine specific score for PSMs
|
|
17509
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
17539
|
17510
|
is_a: MS:1001153 ! search engine specific score
|
17540
|
17511
|
relationship: has_order MS:1002108 ! higher score better
|
17541
|
17512
|
relationship: has_domain MS:1002305 ! value between 0 and 1 inclusive
|
...
|
...
|
@@ -17654,3 +17625,2463 @@ name: protein group-level result list statistic
|
17654
|
17625
|
def: "Attrbiute of an entire list of protein groups." [PSI:PI]
|
17655
|
17626
|
is_a: MS:1002405 ! protein group-level result list attribute
|
17656
|
17627
|
|
|
17628
|
+[Term]
|
|
17629
|
+id: MS:1002719
|
|
17630
|
+name: Pegasus BT
|
|
17631
|
+def: "LECO bench-top GC time-of-flight mass spectrometer." [PSI:PI]
|
|
17632
|
+is_a: MS:1001800 ! LECO instrument model
|
|
17633
|
+
|
|
17634
|
+[Term]
|
|
17635
|
+id: MS:1002720
|
|
17636
|
+name: MSPathFinder
|
|
17637
|
+def: "PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra." [PSI:PI]
|
|
17638
|
+is_a: MS:1001456 ! analysis software
|
|
17639
|
+
|
|
17640
|
+[Term]
|
|
17641
|
+id: MS:1002721
|
|
17642
|
+name: MSPathFinder:SpecEValue
|
|
17643
|
+def: "MSPathFinder spectral E-value." [PSI:PI]
|
|
17644
|
+xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
|
17645
|
+is_a: MS:1002353 ! PSM-level e-value
|
|
17646
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
|
17647
|
+relationship: has_order MS:1002109 ! lower score better
|
|
17648
|
+
|
|
17649
|
+[Term]
|
|
17650
|
+id: MS:1002722
|
|
17651
|
+name: MSPathFinder:EValue
|
|
17652
|
+def: "MSPathFinder E-value." [PSI:PI]
|
|
17653
|
+xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
|
17654
|
+is_a: MS:1002353 ! PSM-level e-value
|
|
17655
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
|
17656
|
+relationship: has_order MS:1002109 ! lower score better
|
|
17657
|
+
|
|
17658
|
+[Term]
|
|
17659
|
+id: MS:1002723
|
|
17660
|
+name: MSPathFinder:QValue
|
|
17661
|
+def: "MSPathFinder Q-value." [PSI:PI]
|
|
17662
|
+xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
|
17663
|
+is_a: MS:1002354 ! PSM-level q-value
|
|
17664
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
|
17665
|
+
|
|
17666
|
+[Term]
|
|
17667
|
+id: MS:1002724
|
|
17668
|
+name: MSPathFinder:PepQValue
|
|
17669
|
+def: "MSPathFinder peptide-level Q-value." [PSI:PI]
|
|
17670
|
+xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
|
17671
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
|
17672
|
+
|
|
17673
|
+[Term]
|
|
17674
|
+id: MS:1002725
|
|
17675
|
+name: MSPathFinder:RawScore
|
|
17676
|
+def: "MSPathFinder raw score." [PSI:PI]
|
|
17677
|
+xref: value-type:xsd\:double "The allowed value-type for this CV term."
|
|
17678
|
+is_a: MS:1001143 ! PSM-level search engine specific statistic
|
|
17679
|
+
|
|
17680
|
+[Term]
|
|
17681
|
+id: MS:1002726
|
|
17682
|
+name: SYNAPT G2-Si
|
|
17683
|
+def: "Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer." [PSI:PI]
|
|
17684
|
+is_a: MS:1000126 ! Waters instrument model
|
|
17685
|
+
|
|
17686
|
+[Term]
|
|
17687
|
+id: MS:1002727
|
|
17688
|
+name: MALDI SYNAPT G2-Si
|
|
17689
|
+def: "Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer." [PSI:PI]
|
|
17690
|
+is_a: MS:1000126 ! Waters instrument model
|
|
17691
|
+
|
|
17692
|
+[Term]
|
|
17693
|
+id: MS:1002728
|
|
17694
|
+name: Vion IMS QTof
|
|
17695
|
+def: "Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer." [PSI:PI]
|
|
17696
|
+is_a: MS:1000126 ! Waters instrument model
|
|
17697
|
+
|
|
17698
|
+[Term]
|
|
17699
|
+id: MS:1002729
|
|
17700
|
+name: Xevo G2 XS Tof
|
|
17701
|
+def: "Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer." [PSI:PI]
|
|
17702
|
+is_a: MS:1000126 ! Waters instrument model
|
|
17703
|
+
|
|
17704
|
+[Term]
|
|
17705
|
+id: MS:1002730
|
|
17706
|
+name: Xevo TQ-XS
|
|
17707
|
+def: "Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer." [PSI:PI]
|
|
17708
|
+is_a: MS:1000126 ! Waters instrument model
|
|
17709
|
+
|
|
17710
|
+[Term]
|
|
17711
|
+id: MS:1002731
|
|
17712
|
+name: Xevo TQ-S micro
|
|
17713
|
+def: "Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer." [PSI:PI]
|
|
17714
|
+is_a: MS:1000126 ! Waters instrument model
|
|
17715
|
+
|
|
17716
|
+[Term]
|
|
17717
|
+id: MS:1002732
|
|
17718
|
+name: Orbitrap Fusion Lumos
|
|
17719
|
+def: "Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers." [PSI:PI]
|
|
17720
|
+is_a: MS:1000494 ! Thermo Scientific instrument model
|
|
17721
|
+
|
|