@@ -2,7 +2,7 @@ Package: mzR

 Type: Package

 Title: parser for netCDF, mzXML, mzData and mzML and mzIdentML files

        (mass spectrometry data)

-Version: 2.19.7

+Version: 2.19.8

 Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer

 Maintainer: Steffen Neumann <sneumann@ipb-halle.de>,

 	    Laurent Gatto <lg390@cam.ac.uk>,

@@ -1,3 +1,14 @@

+CHANGES IN VERSION 2.19.8

+-------------------------

+ o inject a new PSI-MS.obo controlled vocabulary 

+   data-version: 4.1.30

+   date: 30:08:2019 16:10

+   saved-by: Gerhard Mayer

+

+CHANGES IN VERSION 2.19.7

+-------------------------

+ o Fix compile error on Windows + Mac (Thanks Mike!)

+

 CHANGES IN VERSION 2.19.6

 -------------------------

  o header for the pwiz backend returns NA instead of 0 for not defined or

@@ -1,5 +1,5 @@

 //

-// $Id: cv.cpp 9934 2016-08-02 17:48:03Z chambm $

+// $Id$

 //

 //

 // Darren Kessner <darren@proteowizard.org>

@@ -56,6 +56,61 @@ const TermInfo termInfos_[] =

 {

     {CVID_Unknown, "??:0000000", "CVID_Unknown", "CVID_Unknown", false},

     {MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies, "MS:0000000", "Proteomics Standards Initiative Mass Spectrometry Vocabularies", "Proteomics Standards Initiative Mass Spectrometry Vocabularies.", false},

+    {PEFF_PEFF_CV_term, "PEFF:0000001", "PEFF CV term", "PSI Extended FASTA Format controlled vocabulary term.", false},

+    {PEFF_PEFF_file_header_section_term, "PEFF:0000002", "PEFF file header section term", "CV term that may appear in a PEFF file header section.", false},

+    {PEFF_PEFF_file_sequence_entry_term, "PEFF:0000003", "PEFF file sequence entry term", "CV term that may appear in a description line of a PEFF file individual sequence entry.", false},

+    {PEFF_DbName, "PEFF:0000008", "DbName", "PEFF keyword for the sequence database name.", false},

+    {PEFF_Prefix, "PEFF:0000009", "Prefix", "PEFF keyword for the sequence database prefix.", false},

+    {PEFF_DbDescription, "PEFF:0000010", "DbDescription", "PEFF keyword for the sequence database short description.", false},

+    {PEFF_Decoy, "PEFF:0000011", "Decoy", "PEFF keyword for the specifying whether the sequence database is a decoy database.", false},

+    {PEFF_DbSource, "PEFF:0000012", "DbSource", "PEFF keyword for the source of the database file.", false},

+    {PEFF_DbVersion, "PEFF:0000013", "DbVersion", "PEFF keyword for the database version (release date) according to database provider.", false},

+    {PEFF_DbDate_OBSOLETE, "PEFF:0000014", "DbDate", "PEFF keyword for the database date (release or file date of the source) according to database provider.", true},

+    {PEFF_NumberOfEntries, "PEFF:0000015", "NumberOfEntries", "PEFF keyword for the sumber of sequence entries in the database.", false},

+    {PEFF_Conversion, "PEFF:0000016", "Conversion", "PEFF keyword for the description of the conversion from original format to this current one.", false},

+    {PEFF_SequenceType, "PEFF:0000017", "SequenceType", "PEFF keyword for the molecular type of the sequences.", false},

+    {PEFF_SpecificKey, "PEFF:0000018", "SpecificKey", "PEFF keyword for database specific keywords not included in the current controlled vocabulary.", false},

+    {PEFF_SpecificValue, "PEFF:0000019", "SpecificValue", "PEFF keyword for the specific values for a custom key.", false},

+    {PEFF_DatabaseDescription, "PEFF:0000020", "DatabaseDescription", "PEFF keyword for the short description of the PEFF file.", false},

+    {PEFF_GeneralComment, "PEFF:0000021", "GeneralComment", "PEFF keyword for a general comment.", false},

+    {PEFF_ProteoformDb, "PEFF:0000022", "ProteoformDb", "PEFF keyword that when set to 'true' indicates that the database contains complete proteoforms.", false},

+    {PEFF_OptionalTagDef, "PEFF:0000023", "OptionalTagDef", "PEFF keyword for the short tag (abbreviation) and longer definition used to annotate a sequence annotation (such as variant or modification) in the OptionalTag location.", false},

+    {PEFF_HasAnnotationIdentifiers, "PEFF:0000024", "HasAnnotationIdentifiers", "PEFF keyword that when set to 'true' indicates that entries in the database have identifiers for each annotation.", false},

+    {PEFF_DbUniqueId_OBSOLETE, "PEFF:0001001", "DbUniqueId", "Sequence database unique identifier.", true},

+    {PEFF_PName, "PEFF:0001002", "PName", "PEFF keyword for the protein full name.", false},

+    {PEFF_NcbiTaxId, "PEFF:0001003", "NcbiTaxId", "PEFF keyword for the NCBI taxonomy identifier.", false},

+    {PEFF_TaxName, "PEFF:0001004", "TaxName", "PEFF keyword for the taxonomy name (latin or common name).", false},

+    {PEFF_GName, "PEFF:0001005", "GName", "PEFF keyword for the gene name.", false},

+    {PEFF_Length, "PEFF:0001006", "Length", "PEFF keyword for the sequence length.", false},

+    {PEFF_SV, "PEFF:0001007", "SV", "PEFF keyword for the sequence version.", false},

+    {PEFF_EV, "PEFF:0001008", "EV", "PEFF keyword for the entry version.", false},

+    {PEFF_PE, "PEFF:0001009", "PE", "PEFF keyword for the Protein Evidence; A UniProtKB code 1-5.", false},

+    {PEFF_Processed, "PEFF:0001010", "Processed", "PEFF keyword for information on how the full length original protein sequence can be processed into shorter components such as signal peptides and chains.", false},

+    {PEFF_Variant_OBSOLETE, "PEFF:0001011", "Variant", "Sequence variation (substitution, insertion, deletion).", true},

+    {PEFF_ModResPsi, "PEFF:0001012", "ModResPsi", "PEFF keyword for the modified residue with PSI-MOD identifier.", false},

+    {PEFF_ModRes, "PEFF:0001013", "ModRes", "PEFF keyword for the modified residue without aPSI-MOD or UniMod identifier.", false},

+    {PEFF_AltAC, "PEFF:0001014", "AltAC", "PEFF keyword for the Alternative Accession Code.", false},

+    {PEFF_SeqStatus, "PEFF:0001015", "SeqStatus", "PEFF keyword for the sequence status. Complete or Fragment.", false},

+    {PEFF_CC, "PEFF:0001016", "CC", "PEFF keyword for the entry associated comment.", false},

+    {PEFF_KW, "PEFF:0001017", "KW", "PEFF keyword for the entry associated keyword(s).", false},

+    {PEFF_GO, "PEFF:0001018", "GO", "PEFF keyword for the Gene Ontology code.", false},

+    {PEFF_XRef, "PEFF:0001019", "XRef", "PEFF keyword for the cross-reference to an external resource.", false},

+    {PEFF_mature_protein, "PEFF:0001020", "mature protein", "Portion of a newly synthesized protein that contributes to a final structure after other components such as signal peptides are removed.", false},

+    {PEFF_signal_peptide, "PEFF:0001021", "signal peptide", "Short peptide present at the N-terminus of a newly synthesized protein that is cleaved off and is not part of the final mature protein.", false},

+    {PEFF_transit_peptide, "PEFF:0001022", "transit peptide", "Short peptide present at the N-terminus of a newly synthesized protein that helps the protein through the membrane of its destination organelle.", false},

+    {PEFF_Conflict, "PEFF:0001023", "Conflict", "PEFF keyword for the sequence conflict; a UniProtKB term.", false},

+    {PEFF_Crc64, "PEFF:0001024", "Crc64", "PEFF keyword for the Sequence checksum in crc64.", false},

+    {PEFF_Domain, "PEFF:0001025", "Domain", "PEFF keyword for the sequence range of a domain.", false},

+    {PEFF_ID, "PEFF:0001026", "ID", "PEFF keyword for the UniProtKB specific Protein identifier ID; a UniProtKB term.", false},

+    {PEFF_ModResUnimod, "PEFF:0001027", "ModResUnimod", "PEFF keyword for the modified residue with UniMod identifier.", false},

+    {PEFF_VariantSimple, "PEFF:0001028", "VariantSimple", "PEFF keyword for the simple sequence variation of a single amino acid change. A change to a stop codon is permitted with a * symbol. More complex variations must be encoded with the VariantComplex term.", false},

+    {PEFF_VariantComplex, "PEFF:0001029", "VariantComplex", "PEFF keyword for a sequence variation that is more complex than a single amino acid change or change to a stop codon.", false},

+    {PEFF_Proteoform, "PEFF:0001030", "Proteoform", "PEFF keyword for the proteoforms of this protein, constructed as a set of annotation identifiers.", false},

+    {PEFF_DisulfideBond, "PEFF:0001031", "DisulfideBond", "PEFF keyword for the disulfide bonds in this protein, constructed as a sets of annotation identifiers of two half-cystine modifications.", false},

+    {PEFF_PEFF_molecule_processing_keyword, "PEFF:0001032", "PEFF molecule processing keyword", "PEFF keyword describing the type of processing event being described.", false},

+    {PEFF_Comment, "PEFF:0001033", "Comment", "PEFF keyword for the individual protein entry comment. It is discouraged to put parsable information here. This is only for free-text commentary.", false},

+    {PEFF_propeptide, "PEFF:0001034", "propeptide", "Short peptide that is cleaved off a newly synthesized protein and generally immediately degraded in the process of protein maturation, and is not a signal peptide or transit peptide.", false},

+    {PEFF_initiator_methionine, "PEFF:0001035", "initiator methionine", "N-terminal methionine residue of a protein that can be co-translationally cleaved.", false},

     {MS_sample_number, "MS:1000001", "sample number", "A reference number relevant to the sample under study.", false},

     {MS_sample_name, "MS:1000002", "sample name", "A reference string relevant to the sample under study.", false},

     {MS_sample_state, "MS:1000003", "sample state", "The chemical phase of a pure sample, or the state of a mixed sample.", false},

@@ -205,7 +260,7 @@ const TermInfo termInfos_[] =

     {MS_API_4000, "MS:1000147", "API 4000", "Applied Biosystems/MDS SCIEX API 4000 MS.", false},

     {MS_autoflex_II, "MS:1000148", "autoflex II", "Bruker Daltonics' autoflex II: MALDI TOF.", false},

     {MS_autoflex_TOF_TOF, "MS:1000149", "autoflex TOF/TOF", "Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.", false},

-    {MS_Auto_Spec_Ultima_NT, "MS:1000150", "Auto Spec Ultima NT", "Waters AutoSpec Ultima NT MS.", false},

+    {MS_Auto_Spec_Ultima_NT, "MS:1000150", "Auto Spec Ultima NT", "Waters magnetic sector based AutoSpec Ultima NT MS.", false},

     {MS_BioTOF_II, "MS:1000151", "BioTOF II", "Bruker Daltonics' BioTOF II: ESI TOF.", false},

     {MS_BioTOF_Q, "MS:1000152", "BioTOF-Q", "Bruker Daltonics' BioTOF-Q: ESI Q-TOF.", false},

     {MS_DELTA_plusAdvantage, "MS:1000153", "DELTA plusAdvantage", "ThermoFinnigan DELTA plusAdvantage MS.", false},

@@ -244,10 +299,10 @@ const TermInfo termInfos_[] =

     {MS_proteomics_solution_1, "MS:1000186", "proteomics solution 1", "Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.", false},

     {MS_Q_TRAP, "MS:1000187", "Q TRAP", "Applied Biosystems/MDS SCIEX Q TRAP MS.", false},

     {MS_Q_Tof_micro, "MS:1000188", "Q-Tof micro", "Waters oa-ToF based Q-Tof micro.", false},

-    {MS_Q_Tof_ultima, "MS:1000189", "Q-Tof ultima", "Waters oa-ToF based Q-Tof Ultima.", false},

+    {MS_Q_Tof_Ultima, "MS:1000189", "Q-Tof Ultima", "Waters oa-ToF based Q-Tof Ultima.", false},

     {MS_QSTAR, "MS:1000190", "QSTAR", "Applied Biosystems/MDS SCIEX QSTAR MS.", false},

-    {MS_quattro_micro, "MS:1000191", "quattro micro", "Waters oa-ToF based micro.", false},

-    {MS_Quattro_UItima, "MS:1000192", "Quattro UItima", "Waters oa-ToF based Ultima.", false},

+    {MS_quattro_micro, "MS:1000191", "quattro micro", "Waters (triple) quadrupole based micro.", false},

+    {MS_Quattro_Ultima, "MS:1000192", "Quattro Ultima", "Waters (triple) quadrupole based Ultima.", false},

     {MS_Surveyor_MSQ, "MS:1000193", "Surveyor MSQ", "ThermoFinnigan Surveyor MSQ MS.", false},

     {MS_SymBiot_I, "MS:1000194", "SymBiot I", "Applied Biosystems/MDS SCIEX SymBiot I MS.", false},

     {MS_SymBiot_XVI, "MS:1000195", "SymBiot XVI", "Applied Biosystems/MDS SCIEX SymBiot XVI MS.", false},

@@ -290,7 +345,7 @@ const TermInfo termInfos_[] =

     {MS_peak_intensity_OBSOLETE, "MS:1000232", "peak intensity", "The height or area of a peak in a mass spectrum.", true},

     {MS_proton_affinity_OBSOLETE, "MS:1000233", "proton affinity", "The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.", true},

     {MS_mass_resolving_power_OBSOLETE, "MS:1000234", "mass resolving power", "In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported.", true},

-    {MS_total_ion_current_chromatogram, "MS:1000235", "total ion current chromatogram", "Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.", false},

+    {MS_total_ion_current_chromatogram, "MS:1000235", "total ion current chromatogram", "Representation of the total ion current detected in each of a series of mass spectra versus time.", false},

     {MS_transmission, "MS:1000236", "transmission", "The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region.", false},

     {MS_unified_atomic_mass_unit_OBSOLETE, "MS:1000237", "unified atomic mass unit", "A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.", true},

     {MS_accelerator_mass_spectrometry_OBSOLETE, "MS:1000238", "accelerator mass spectrometry", "A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.", true},

@@ -408,7 +463,7 @@ const TermInfo termInfos_[] =

     {MS_point_collector, "MS:1000350", "point collector", "A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially.", false},

     {MS_postacceleration_detector, "MS:1000351", "postacceleration detector", "A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector.", false},

     {MS_secondary_electron_OBSOLETE, "MS:1000352", "secondary electron", "Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go.", true},

-    {MS_adduct_ion_OBSOLETE, "MS:1000353", "adduct ion", "Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.", true},

+    {MS_adduct_ion, "MS:1000353", "adduct ion", "Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.", false},

     {MS_aromatic_ion_OBSOLETE, "MS:1000354", "aromatic ion", "A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure.", true},

     {MS_analog_ion_OBSOLETE, "MS:1000355", "analog ion", "Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+.", true},

     {MS_anti_aromatic_ion_OBSOLETE, "MS:1000356", "anti-aromatic ion", "A planar cyclic ion with 4n ? electrons and is therefore not aromatic.", true},

@@ -519,11 +574,11 @@ const TermInfo termInfos_[] =

     {MS_ion_optics, "MS:1000462", "ion optics", "Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions.", false},

     {MS_instrument, "MS:1000463", "instrument", "Description of the instrument or the mass spectrometer.", false},

     {MS_mass_unit_OBSOLETE, "MS:1000464", "mass unit", "A unit of measurement for mass.", true},

-    {MS_scan_polarity, "MS:1000465", "scan polarity", "An acquisition mode to which specifies weather polarity is negative, positive or alternating.", false},

+    {MS_scan_polarity, "MS:1000465", "scan polarity", "Relative orientation of the electromagnetic field during the selection and detection of ions in the mass spectrometer.", false},

     {MS_alternating_OBSOLETE, "MS:1000466", "alternating", "Alternating.", true},

     {MS_1200_series_LC_MSD_SL, "MS:1000467", "1200 series LC/MSD SL", "The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2.", false},

     {MS_6110_Quadrupole_LC_MS, "MS:1000468", "6110 Quadrupole LC/MS", "The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications.", false},

-    {MS_6120_Quadrupole_LC_MS, "MS:1000469", "6120 Quadrupole LC/MS", "The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.", false},

+    {MS_6120A_Quadrupole_LC_MS, "MS:1000469", "6120A Quadrupole LC/MS", "The 6120A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.", false},

     {MS_6130_Quadrupole_LC_MS, "MS:1000470", "6130 Quadrupole LC/MS", "The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition.", false},

     {MS_6140_Quadrupole_LC_MS, "MS:1000471", "6140 Quadrupole LC/MS", "The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition.", false},

     {MS_6210_Time_of_Flight_LC_MS, "MS:1000472", "6210 Time-of-Flight LC/MS", "The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.", false},

@@ -679,10 +734,10 @@ const TermInfo termInfos_[] =

     {MS_Surveyor_PDA, "MS:1000622", "Surveyor PDA", "Surveyor PDA.", false},

     {MS_Accela_PDA, "MS:1000623", "Accela PDA", "Accela PDA.", false},

     {MS_inductive_detector, "MS:1000624", "inductive detector", "Inductive detector.", false},

-    {MS_chromatogram, "MS:1000625", "chromatogram", "The representation of detector response versus time.", false},

-    {MS_chromatogram_type, "MS:1000626", "chromatogram type", "Broad category or type of a chromatogram.", false},

-    {MS_selected_ion_current_chromatogram, "MS:1000627", "selected ion current chromatogram", "Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.", false},

-    {MS_basepeak_chromatogram, "MS:1000628", "basepeak chromatogram", "Chromatogram created by creating an array of the most intense peaks at each time point.", false},

+    {MS_chromatogram, "MS:1000625", "chromatogram", "Representation of a chromatographic separation attribute measurement versus time.", false},

+    {MS_chromatogram_type, "MS:1000626", "chromatogram type", "Type of chromatogram measurement being represented.", false},

+    {MS_selected_ion_current_chromatogram, "MS:1000627", "selected ion current chromatogram", "Representation of an array of the measurements of a specific single ion current versus time.", false},

+    {MS_basepeak_chromatogram, "MS:1000628", "basepeak chromatogram", "Representation of an array of the most intense peaks versus time.", false},

     {MS_low_intensity_threshold, "MS:1000629", "low intensity threshold", "Threshold below which some action is taken.", false},

     {MS_data_processing_parameter, "MS:1000630", "data processing parameter", "Data processing parameter used in the data processing performed on the data file.", false},

     {MS_high_intensity_threshold, "MS:1000631", "high intensity threshold", "Threshold above which some action is taken.", false},

@@ -730,7 +785,7 @@ const TermInfo termInfos_[] =

     {MS_MultiQuant, "MS:1000674", "MultiQuant", "Applied Biosystems|MDS SCIEX software for MRM-based quantitation.", false},

     {MS_6220_Time_of_Flight_LC_MS, "MS:1000675", "6220 Time-of-Flight LC/MS", "The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.", false},

     {MS_6510_Quadrupole_Time_of_Flight_LC_MS, "MS:1000676", "6510 Quadrupole Time-of-Flight LC/MS", "The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.", false},

-    {MS_6520_Quadrupole_Time_of_Flight_LC_MS, "MS:1000677", "6520 Quadrupole Time-of-Flight LC/MS", "The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.", false},

+    {MS_6520A_Quadrupole_Time_of_Flight_LC_MS, "MS:1000677", "6520A Quadrupole Time-of-Flight LC/MS", "The 6520A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.", false},

     {MS_MassHunter_Data_Acquisition, "MS:1000678", "MassHunter Data Acquisition", "Software for data acquisition of 6000 series instruments.", false},

     {MS_MassHunter_Easy_Access, "MS:1000679", "MassHunter Easy Access", "Software for open access data acquisition.", false},

     {MS_MassHunter_Qualitative_Analysis, "MS:1000680", "MassHunter Qualitative Analysis", "Software for data analysis of data from 6000 series instruments.", false},

@@ -863,10 +918,10 @@ const TermInfo termInfos_[] =

     {MS_Th_s, "MS:1000807", "Th/s", "Unit describing the scan rate of a spectrum in Thomson per second.", false},

     {MS_chromatogram_attribute, "MS:1000808", "chromatogram attribute", "Chromatogram properties that are associated with a value.", false},

     {MS_chromatogram_title, "MS:1000809", "chromatogram title", "A free-form text title describing a chromatogram.", false},

-    {MS_mass_chromatogram, "MS:1000810", "mass chromatogram", "A plot of the relative abundance of a beam or other collection of ions as a function of the retention time.", false},

-    {MS_electromagnetic_radiation_chromatogram, "MS:1000811", "electromagnetic radiation chromatogram", "The measurement of electromagnetic properties as a function of the retention time.", false},

-    {MS_absorption_chromatogram, "MS:1000812", "absorption chromatogram", "The measurement of light absorbed by the sample as a function of the retention time.", false},

-    {MS_emission_chromatogram, "MS:1000813", "emission chromatogram", "The measurement of light emitted by the sample as a function of the retention time.", false},

+    {MS_ion_current_chromatogram, "MS:1000810", "ion current chromatogram", "Representation of the current of ions versus time.", false},

+    {MS_electromagnetic_radiation_chromatogram, "MS:1000811", "electromagnetic radiation chromatogram", "Representation of electromagnetic properties versus time.", false},

+    {MS_absorption_chromatogram, "MS:1000812", "absorption chromatogram", "Representation of light absorbed by the sample versus time.", false},

+    {MS_emission_chromatogram, "MS:1000813", "emission chromatogram", "Representation of light emitted by the sample versus time.", false},

     {MS_counts_per_second, "MS:1000814", "counts per second", "The number of counted events observed per second in one or a group of elements of a detector.", false},

     {MS_Bruker_BAF_format, "MS:1000815", "Bruker BAF format", "Bruker BAF raw file format.", false},

     {MS_Bruker_U2_format, "MS:1000816", "Bruker U2 format", "Bruker HyStar U2 file format.", false},

@@ -998,7 +1053,7 @@ const TermInfo termInfos_[] =

     {MS_database_name, "MS:1001013", "database name", "The name of the search database (nr, SwissProt or est_human).", false},

     {MS_database_local_file_path_OBSOLETE, "MS:1001014", "database local file path", "OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view.", true},

     {MS_database_original_uri, "MS:1001015", "database original uri", "URI, from where the search database was originally downloaded.", false},

-    {MS_database_version_OBSOLETE, "MS:1001016", "database version", "OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.", true},

+    {MS_database_version, "MS:1001016", "database version", "Version of the search database. In mzIdentML use the attribute instead.", false},

     {MS_database_release_date_OBSOLETE, "MS:1001017", "database release date", "OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database.", true},

     {MS_database_type, "MS:1001018", "database type", "Database containing amino acid or nucleic acid sequences.", false},

     {MS_database_filtering, "MS:1001019", "database filtering", "Was there filtering used on the database.", false},

@@ -1365,8 +1420,8 @@ const TermInfo termInfos_[] =

     {MS_SpectraST_dot_bias, "MS:1001418", "SpectraST:dot_bias", "SpectraST measure of how much of the dot product is dominated by a few peaks.", false},

     {MS_SpectraST_discriminant_score_F, "MS:1001419", "SpectraST:discriminant score F", "SpectraST spectrum score.", false},

     {MS_SpectraST_delta, "MS:1001420", "SpectraST:delta", "SpectraST normalised difference between dot product of top hit and runner-up.", false},

-    {MS_pepXML_format, "MS:1001421", "pepXML format", "Source file for this mzIdentML was in a pepXML file format.", false},

-    {MS_protXML_format, "MS:1001422", "protXML format", "Source file for this mzIdentML was in protXML file format.", false},

+    {MS_pepXML_format, "MS:1001421", "pepXML format", "The XML-based pepXML file format for encoding PSM information, created and maintained by the Trans-Proteomic Pipeline developers.", false},

+    {MS_protXML_format, "MS:1001422", "protXML format", "The XML-based protXML file format for encoding protein identifications, created and maintained by the Trans-Proteomic Pipeline developers.", false},

     {MS_translation_table_description, "MS:1001423", "translation table description", "A URL that describes the translation table used to translate the nucleotides to amino acids.", false},

     {MS_ProteinExtractor_Methodname, "MS:1001424", "ProteinExtractor:Methodname", "Name of the used method in the ProteinExtractor algorithm.", false},

     {MS_ProteinExtractor_GenerateNonRedundant, "MS:1001425", "ProteinExtractor:GenerateNonRedundant", "Flag indicating if a non redundant scoring should be generated.", false},

@@ -1415,9 +1470,9 @@ const TermInfo termInfos_[] =

     {MS_taxonomy__scientific_name, "MS:1001469", "taxonomy: scientific name", "This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.", false},

     {MS_taxonomy__Swiss_Prot_ID, "MS:1001470", "taxonomy: Swiss-Prot ID", "This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.", false},

     {MS_peptide_modification_details, "MS:1001471", "peptide modification details", "The children of this term can be used to describe modifications.", false},

-    {MS_selected_ion_monitoring_chromatogram, "MS:1001472", "selected ion monitoring chromatogram", "Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.", false},

-    {MS_selected_reaction_monitoring_chromatogram, "MS:1001473", "selected reaction monitoring chromatogram", "Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.", false},

-    {MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE, "MS:1001474", "consecutive reaction monitoring chromatogram", "Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.", true},

+    {MS_selected_ion_monitoring_chromatogram, "MS:1001472", "selected ion monitoring chromatogram", "Representation of an array of the measurements of a selectively monitored ion versus time.", false},

+    {MS_selected_reaction_monitoring_chromatogram, "MS:1001473", "selected reaction monitoring chromatogram", "Representation of an array of the measurements of a selectively monitored reaction versus time.", false},

+    {MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE, "MS:1001474", "consecutive reaction monitoring chromatogram", "Representation of an array of the measurements of a series of monitored reactions versus time.", true},

     {MS_OMSSA, "MS:1001475", "OMSSA", "Open Mass Spectrometry Search Algorithm was used to analyze the spectra.", false},

     {MS_X_Tandem, "MS:1001476", "X!Tandem", "X!Tandem was used to analyze the spectra.", false},

     {MS_SpectraST, "MS:1001477", "SpectraST", "SpectraST was used to analyze the spectra.", false},

@@ -1524,9 +1579,6 @@ const TermInfo termInfos_[] =

     {MS_SpectrumMill_Discriminant_Score, "MS:1001580", "SpectrumMill:Discriminant Score", "Discriminant score from Agilent SpectrumMill software.", false},

     {MS_FAIMS_compensation_voltage, "MS:1001581", "FAIMS compensation voltage", "The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.", false},

     {MS_XCMS, "MS:1001582", "XCMS", "Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.", false},

-    {MS_mzR, "MS:1002869", "mzR", "Bioconductor package mzR for reading and writing mass spectrometry data files.", false},

-    {MS_MSnbase, "MS:1002870", "MSnbase", "Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.", false},

-    {MS_CAMERA, "MS:1002871", "CAMERA", "Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments.", false},

     {MS_MaxQuant, "MS:1001583", "MaxQuant", "MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.", false},

     {MS_combined_pmf___ms_ms_search, "MS:1001584", "combined pmf + ms-ms search", "Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF).", false},

     {MS_MyriMatch, "MS:1001585", "MyriMatch", "Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.", false},

@@ -1711,7 +1763,7 @@ const TermInfo termInfos_[] =

     {MS_ACQUITY_UPLC_I_Class, "MS:1001764", "ACQUITY UPLC I-Class", "Waters LC-system ACQUITY UPLC I-Class.", false},

     {MS_ACQUITY_UPLC_Systems_with_2D_Technology, "MS:1001765", "ACQUITY UPLC Systems with 2D Technology", "Waters LC-system ACQUITY UPLC Systems with 2D Technology.", false},

     {MS_nanoACQUITY_UPLC, "MS:1001766", "nanoACQUITY UPLC", "Waters LC-system nanoACQUITY UPLC.", false},

-    {MS_nanoACQUITY_UPLC_System_with_Technology, "MS:1001767", "nanoACQUITY UPLC System with Technology", "Waters LC-system nanoACQUITY UPLC System with Technology.", false},

+    {MS_nanoACQUITY_UPLC_System_with_1D_Technology, "MS:1001767", "nanoACQUITY UPLC System with 1D Technology", "Waters LC-system nanoACQUITY UPLC System with 1D Technology.", false},

     {MS_nanoACQUITY_UPLC_with_HDX_Technology, "MS:1001768", "nanoACQUITY UPLC with HDX Technology", "Waters LC-system nanoACQUITY UPLC with HDX Technology.", false},

     {MS_TRIZAIC_UPLC_nanoTile, "MS:1001769", "TRIZAIC UPLC nanoTile", "Waters LC-system TRIZAIC UPLC nanoTile.", false},

     {MS_GCT_Premier, "MS:1001770", "GCT Premier", "Waters oa-ToF based GCT Premier.", false},

@@ -1733,13 +1785,13 @@ const TermInfo termInfos_[] =

     {MS_3100, "MS:1001786", "3100", "Waters quadrupole based 3100.", false},

     {MS_Acquity_SQD, "MS:1001787", "Acquity SQD", "Waters quadrupole based Acquity SQD.", false},

     {MS_Acquity_TQD, "MS:1001788", "Acquity TQD", "Waters quadrupole based Acquity TQD.", false},

-    {MS_Quattro_micro_GC, "MS:1001789", "Quattro micro GC", "Waters quadrupole based Quattro micro GC.", false},

+    {MS_Quattro_micro_GC, "MS:1001789", "Quattro micro GC", "Waters (triple) quadrupole based Quattro micro GC.", false},

     {MS_Xevo_TQ_MS, "MS:1001790", "Xevo TQ MS", "Waters quadrupole based Xevo TQ MS.", false},

     {MS_Xevo_TQD, "MS:1001791", "Xevo TQD", "Waters quadrupole based Xevo TQD.", false},

     {MS_Xevo_TQ_S, "MS:1001792", "Xevo TQ-S", "Waters quadrupole based Xevo TQ-S.", false},

     {MS_Mascot_PreferredTaxonomy, "MS:1001793", "Mascot:PreferredTaxonomy", "NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences.", false},

     {MS_Empower, "MS:1001795", "Empower", "Waters Empower software for liquid chromatography and mass spectrometry acquisition.", false},

-    {MS_Unify, "MS:1001796", "Unify", "Waters Unify software for liquid chromatography and mass spectrometry acquisition.", false},

+    {MS_UNIFY, "MS:1001796", "UNIFY", "Waters UNIFY software for liquid chromatography and mass spectrometry acquisition.", false},

     {MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE, "MS:1001797", "travelling wave ion mobility mass spectrometer", "An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.", true},

     {MS_LECO_software, "MS:1001798", "LECO software", "LECO software for data acquisition and analysis.", false},

     {MS_ChromaTOF_software, "MS:1001799", "ChromaTOF software", "Software for acquisition, processing and analysis of data for LECO instruments.", false},

@@ -1748,7 +1800,7 @@ const TermInfo termInfos_[] =

     {MS_Citius_HRT, "MS:1001802", "Citius HRT", "LECO high resolution time-of-flight LC mass spectrometer.", false},

     {MS_Pegasus, "MS:1001803", "Pegasus", "LECO GC time-of-flight mass spectrometer.", false},

     {MS_TruTOF, "MS:1001804", "TruTOF", "LECO bench-top GC time-of-flight mass spectrometer.", false},

-    {MS_quantification_datatype, "MS:1001805", "quantification datatype", "The data type of the value reported in a QuantLayer for a feature, peptide, protein, protein group.", false},

+    {MS_quantification_datatype, "MS:1001805", "quantification datatype", "The data type of the value reported in a QuantLayer.", false},

     {MS_quantification_object_attribute, "MS:1001806", "quantification object attribute", "Attributes describing the details of an object relevant for reporting quantification workflows or values.", false},

     {MS_study_variable_attribute, "MS:1001807", "study variable attribute", "Attribute describing a study variable.", false},

     {MS_technical_replicate, "MS:1001808", "technical replicate", "The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'.", false},

@@ -1780,12 +1832,12 @@ const TermInfo termInfos_[] =

     {MS_LC_MS_label_free_quantitation_analysis, "MS:1001834", "LC-MS label-free quantitation analysis", "LC-MS label-free workflow (RT m/z map).", false},

     {MS_SILAC_quantitation_analysis, "MS:1001835", "SILAC quantitation analysis", "SILAC workflow (heavy, light, and sometimes medium peak).", false},

     {MS_spectral_counting_quantitation_analysis, "MS:1001836", "spectral counting quantitation analysis", "Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant).", false},

-    {MS_iTRAQ_quantitation_analysis, "MS:1001837", "iTRAQ quantitation analysis", "Quantification analysis using the SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near 114 m/z.", false},

+    {MS_iTRAQ_quantitation_analysis, "MS:1001837", "iTRAQ quantitation analysis", "Quantification analysis using the SCIEX amine-reactive isobaric tags for relative and absolute quantification (iTRAQ) labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near in the 114-121 m/z range.", false},

     {MS_SRM_quantitation_analysis, "MS:1001838", "SRM quantitation analysis", "Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).", false},

     {MS_metabolic_labeling_14N___15N_quantitation_analysis, "MS:1001839", "metabolic labeling 14N / 15N quantitation analysis", "Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens).", false},

     {MS_LC_MS_feature_intensity, "MS:1001840", "LC-MS feature intensity", "Maximum peak intensity of the LC-MS feature.", false},

     {MS_LC_MS_feature_volume, "MS:1001841", "LC-MS feature volume", "Real (intensity times area) volume of the LC-MS feature.", false},

-    {MS_peptide_PSM_count, "MS:1001842", "peptide PSM count", "The number of MS2 spectra identified for this peptide in spectral counting.", false},

+    {MS_sequence_level_spectral_count, "MS:1001842", "sequence-level spectral count", "The number of MS2 spectra identified for a raw peptide sequence without PTMs and charge state in spectral counting.", false},

     {MS_MS1_feature_maximum_intensity, "MS:1001843", "MS1 feature maximum intensity", "Maximum intensity of MS1 feature.", false},

     {MS_MS1_feature_area, "MS:1001844", "MS1 feature area", "Area of MS1 feature.", false},

     {MS_peak_area_OBSOLETE, "MS:1001845", "peak area", "Area of MS1 peak (e.g. SILAC, 15N).", true},

@@ -1952,7 +2004,7 @@ const TermInfo termInfos_[] =

     {MS_target_SRM_transition, "MS:1002007", "target SRM transition", "A transition used to target a specific compound that may be in the sample.", false},

     {MS_decoy_SRM_transition, "MS:1002008", "decoy SRM transition", "A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.", false},

     {MS_isobaric_label_quantitation_analysis, "MS:1002009", "isobaric label quantitation analysis", "Quantitation analysis using an isobaric labelling workflow.", false},

-    {MS_TMT_quantitation_analysis, "MS:1002010", "TMT quantitation analysis", "Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labelling workflow.", false},

+    {MS_TMT_quantitation_analysis, "MS:1002010", "TMT quantitation analysis", "Quantitation analysis using the Thermo Fisher amine-reactive tandem mass tag (TMT) labelling workflow, wherein 2-10 reporter ions are measured in MS2 spectra in the 126-131 m/z.", false},

     {MS_desorption_electrospray_ionization, "MS:1002011", "desorption electrospray ionization", "Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.", false},

     {MS_Mascot_PTM_site_assignment_confidence, "MS:1002012", "Mascot:PTM site assignment confidence", "Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score).", false},

     {MS_collision_energy_ramp_start, "MS:1002013", "collision energy ramp start", "Collision energy at the start of the collision energy ramp.", false},

@@ -1980,7 +2032,7 @@ const TermInfo termInfos_[] =

     {MS_senior_author, "MS:1002035", "senior author", "The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.", false},

     {MS_co_author, "MS:1002036", "co-author", "One of a set of authors associated with a publication or release.", false},

     {MS_dataset_submitter, "MS:1002037", "dataset submitter", "A person who submits a dataset to a repository.", false},

-    {MS_unlabeled_sample, "MS:1002038", "unlabeled sample", "A sample that has not been labelled or modified. This is often referred to as \\\"light\\\" to distinguish from \\\"heavy\\\".", false},

+    {MS_label_free_sample, "MS:1002038", "label free sample", "A sample that has not been labelled or modified. This is often referred to as \\\"light\\\" to distinguish from \\\"heavy\\\".", false},

     {MS_inlet_attribute, "MS:1002039", "inlet attribute", "Inlet properties that are associated with a value.", false},

     {MS_inlet_temperature, "MS:1002040", "inlet temperature", "The temperature of the inlet of a mass spectrometer.", false},

     {MS_source_temperature, "MS:1002041", "source temperature", "The temperature of the source of a mass spectrometer.", false},

@@ -2218,7 +2270,7 @@ const TermInfo termInfos_[] =

     {MS_SQ_Detector_2, "MS:1002274", "SQ Detector 2", "Waters quadrupole based SQ Detector 2.", false},

     {MS_Xevo_G2_S_Tof, "MS:1002275", "Xevo G2-S Tof", "Waters oa-ToF based Xevo G2-S Tof.", false},

     {MS_Xevo_G2_S_QTof, "MS:1002276", "Xevo G2-S QTof", "Waters oa-ToF based Xevo G2-S QTof.", false},

-    {MS_AutoSpec_Premier, "MS:1002277", "AutoSpec Premier", "Waters AutoSpec Premier.", false},

+    {MS_AutoSpec_Premier, "MS:1002277", "AutoSpec Premier", "Waters AutoSpec Premier magnetic sector instrument.", false},

     {MS_Pegasus_III, "MS:1002278", "Pegasus III", "LECO nominal mass resolution time-of-flight GC mass spectrometer.", false},

     {MS_maXis_4G, "MS:1002279", "maXis 4G", "Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.", false},

     {MS_compact, "MS:1002280", "compact", "Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.", false},

@@ -2301,13 +2353,13 @@ const TermInfo termInfos_[] =

     {MS_PSM_level_probability, "MS:1002357", "PSM-level probability", "Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum.", false},

     {MS_search_engine_specific_peptide_sequence_level_identification_statistic, "MS:1002358", "search engine specific peptide sequence-level identification statistic", "Search engine specific distinct peptide score.", false},

     {MS_peptide_sequence_level_local_FDR, "MS:1002359", "peptide sequence-level local FDR", "Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).", false},

-    {MS_distinct_peptide_level_FDRScore, "MS:1002360", "distinct peptide-level FDRScore", "mzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).", false},

+    {MS_distinct_peptide_level_FDRScore, "MS:1002360", "distinct peptide-level FDRScore", "MzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).", false},

     {MS_distinct_peptide_level_combined_FDRScore, "MS:1002361", "distinct peptide-level combined FDRScore", "Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools.", false},

     {MS_peptide_sequence_level_probability, "MS:1002362", "peptide sequence-level probability", "Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs.", false},

     {MS_search_engine_specific_score_for_proteins, "MS:1002363", "search engine specific score for proteins", "Search engine specific protein scores.", false},

     {MS_protein_level_local_FDR, "MS:1002364", "protein-level local FDR", "Estimation of the local false discovery rate of proteins.", false},

-    {MS_FDRScore_for_proteins, "MS:1002365", "FDRScore for proteins", "mzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.", false},

-    {MS_combined_FDRScore_for_proteins, "MS:1002366", "combined FDRScore for proteins", "mzidLibrary Combined FDRScore for proteins.", false},

+    {MS_FDRScore_for_proteins, "MS:1002365", "FDRScore for proteins", "MzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.", false},

+    {MS_combined_FDRScore_for_proteins, "MS:1002366", "combined FDRScore for proteins", "MzidLibrary Combined FDRScore for proteins.", false},

     {MS_probability_for_proteins, "MS:1002367", "probability for proteins", "Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.", false},

     {MS_search_engine_specific_score_for_protein_groups, "MS:1002368", "search engine specific score for protein groups", "Search engine specific protein group scores.", false},

     {MS_protein_group_level_global_FDR, "MS:1002369", "protein group-level global FDR", "Estimation of the global false discovery rate of protein groups.", false},

@@ -2421,7 +2473,7 @@ const TermInfo termInfos_[] =

     {MS_mean_drift_time_array, "MS:1002477", "mean drift time array", "Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array.", false},

     {MS_mean_charge_array, "MS:1002478", "mean charge array", "Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum.", false},

     {MS_regular_expression, "MS:1002479", "regular expression", "Regular expression.", false},

-    {MS_regular_expression_for_a_digital_object_identifier__DOI_, "MS:1002480", "regular expression for a digital object identifier (DOI)", "(10[.][0-9]\\{4,\\}(?:[.][0-9]+)*/(?:(?![\\\"&\\'<>])[^ \\t\\\\r\\n\\\\v\\\\f])+)", false},

+    {MS_regular_expression_for_a_digital_object_identifier__DOI_, "MS:1002480", "regular expression for a digital object identifier (DOI)", "(10[.][0-9]\\{4,\\}(?:[.][0-9]+)*/(?:(?![\\\"&\\'<>])[^ \\t\\\\r\\n\\\\v\\\\f])+).", false},

     {MS_higher_energy_beam_type_collision_induced_dissociation, "MS:1002481", "higher energy beam-type collision-induced dissociation", "A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.", false},

     {MS_statistical_threshold, "MS:1002482", "statistical threshold", "Estimated statistical threshold.", false},

     {MS_PSM_level_statistical_threshold, "MS:1002483", "PSM-level statistical threshold", "Estimated statistical threshold at PSM-level.", false},

@@ -2446,7 +2498,7 @@ const TermInfo termInfos_[] =

     {MS_no_peptide_level_threshold, "MS:1002502", "no peptide-level threshold", "Indicating that no peptide-level threshold was used.", false},

     {MS_PSM_is_used_for_peptide_level_scoring, "MS:1002503", "PSM is used for peptide-level scoring", "Flags a PSM that it is used for peptide-level scoring.", false},

     {MS_modification_index, "MS:1002504", "modification index", "The order of modifications to be referenced elsewhere in the document.", false},

-    {MS_regular_expression_for_modification_localization_scoring, "MS:1002505", "regular expression for modification localization scoring", "([:digit:]+:[0|1]\\{1\\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\\{1\\}[:digit:]+:(true|false)\\{1\\})", false},

+    {MS_regular_expression_for_modification_localization_scoring, "MS:1002505", "regular expression for modification localization scoring", "([:digit:]+:[0|1]\\{1\\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\\{1\\}[:digit:]+:(true|false)\\{1\\}).", false},

     {MS_modification_position_score, "MS:1002506", "modification position score", "Modification position score.", false},

     {MS_modification_rescoring_false_localization_rate, "MS:1002507", "modification rescoring:false localization rate", "Mod position score: false localization rate.", false},

     {MS_cross_linking_attribute, "MS:1002508", "cross-linking attribute", "Cross-linking attribute.", false},

@@ -2489,7 +2541,7 @@ const TermInfo termInfos_[] =

     {MS_xi_score, "MS:1002545", "xi:score", "The xi result 'Score'.", false},

     {MS_Skyline_mzQuantML_converter, "MS:1002546", "Skyline mzQuantML converter", "A software package to convert Skyline report to mzQuantML.", false},

     {MS_normalized_spectral_abundance_factor, "MS:1002547", "normalized spectral abundance factor", "A normalized spectral abundance factor (NSAF).", false},

-    {MS_distributed_normalized_spectral_abundance_factor, "MS:1002548", "distributed normalized spectral abundance factor", "A distributed normalized spectral abundance factor (dNSAF.", false},

+    {MS_distributed_normalized_spectral_abundance_factor, "MS:1002548", "distributed normalized spectral abundance factor", "A distributed normalized spectral abundance factor (dNSAF).", false},

     {MS_PTM_localization_distinct_peptide_level_statistic, "MS:1002549", "PTM localization distinct peptide-level statistic", "Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence.", false},

     {MS_peptide_phosphoRS_score, "MS:1002550", "peptide:phosphoRS score", "phosphoRS score for PTM site location at the peptide-level.", false},

     {MS_peptide_Ascore, "MS:1002551", "peptide:Ascore", "A-score for PTM site location at the peptide-level.", false},

@@ -2517,7 +2569,7 @@ const TermInfo termInfos_[] =

     {MS_spectrum_identification_statistical_threshold, "MS:1002573", "spectrum identification statistical threshold", "Estimated statistical threshold used for spectrum identification.", false},

     {MS_ASAPRatio, "MS:1002574", "ASAPRatio", "A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.", false},

     {MS_Tide, "MS:1002575", "Tide", "Tide open-source sequence search program developed at the University of Washington.", false},

-    {MS_Andromeda_result_file, "MS:1002576", "Andromeda result file", "Andromeda result file output format.", false},

+    {MS_Andromeda_result_format, "MS:1002576", "Andromeda result format", "Andromeda result file output format.", false},

     {MS_2000_QTRAP, "MS:1002577", "2000 QTRAP", "SCIEX 2000 QTRAP.", false},

     {MS_2500_QTRAP, "MS:1002578", "2500 QTRAP", "SCIEX 2500 QTRAP.", false},

     {MS_3500_QTRAP, "MS:1002579", "3500 QTRAP", "SCIEX 3500 QTRAP.", false},

@@ -2540,10 +2592,10 @@ const TermInfo termInfos_[] =

     {MS_ProLuCID, "MS:1002596", "ProLuCID", "The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute.", false},

     {MS_MS1_format, "MS:1002597", "MS1 format", "MS1 file format for MS1 spectral data.", false},

     {MS_DTASelect, "MS:1002598", "DTASelect", "Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches.", false},

-    {MS_splash_key, "MS:1002599", "splash key", "The Splash, is an unique identifier for Spectra, as the InChI Key is an unique identifier for chemical compounds.", false},

+    {MS_splash_key, "MS:1002599", "splash key", "Spectral Hash key, an unique identifier for spectra.", false},

     {MS_PRIDE_XML, "MS:1002600", "PRIDE XML", "Internal data and submission format of the PRIDE database.", false},

     {MS_mzTab, "MS:1002601", "mzTab", "Tabular result format for proteomics and metabolomics experiments.", false},

-    {MS_quantification_reagent, "MS:1002602", "quantification reagent", "Reagent used in labeled quantification methods.", false},

+    {MS_sample_label, "MS:1002602", "sample label", "Reagent used in labeled quantification methods.", false},

     {MS_ICAT_reagent, "MS:1002603", "ICAT reagent", "Isotope coded affinity tag reagent.", false},

     {MS_ICAT_heavy_reagent, "MS:1002604", "ICAT heavy reagent", "The name of the sample labelled with the heavy ICAT label.", false},

     {MS_ICAT_light_reagent, "MS:1002605", "ICAT light reagent", "The name of the sample labelled with the light ICAT label.", false},

@@ -2556,14 +2608,14 @@ const TermInfo termInfos_[] =

     {MS_SILAC_heavy_reagent, "MS:1002612", "SILAC heavy reagent", "The name of the sample labelled with the heavy SILAC label.", false},

     {MS_SILAC_medium_reagent, "MS:1002613", "SILAC medium reagent", "The name of the sample labelled with the medium SILAC label.", false},

     {MS_SILAC_light_reagent, "MS:1002614", "SILAC light reagent", "The name of the sample labelled with the light SILAC label.", false},

-    {MS_TMT_reagent, "MS:1002615", "TMT reagent", "Tandem mass tag reagent.", false},

+    {MS_TMT_reagent, "MS:1002615", "TMT reagent", "Tandem mass tag reagent used in TMT, glycoTMT, iodoTMT, aminoxyTMT or hydrazideTMT isobaric labeling.", false},

     {MS_TMT_reagent_126, "MS:1002616", "TMT reagent 126", "The name of the sample labelled with the TMT reagent 126.", false},

     {MS_TMT_reagent_127, "MS:1002617", "TMT reagent 127", "The name of the sample labelled with the TMT reagent 127.", false},

     {MS_TMT_reagent_128, "MS:1002618", "TMT reagent 128", "The name of the sample labelled with the TMT reagent 128.", false},

     {MS_TMT_reagent_129, "MS:1002619", "TMT reagent 129", "The name of the sample labelled with the TMT reagent 129.", false},

     {MS_TMT_reagent_130, "MS:1002620", "TMT reagent 130", "The name of the sample labelled with the TMT reagent 130.", false},

     {MS_TMT_reagent_131, "MS:1002621", "TMT reagent 131", "The name of the sample labelled with the TMT reagent 131.", false},

-    {MS_iTRAQ_reagent, "MS:1002622", "iTRAQ reagent", "Isobaric tag for relative and absolute quantitation reagent.", false},

+    {MS_iTRAQ_reagent, "MS:1002622", "iTRAQ reagent", "Isobaric tag for relative and absolute quantitation (iTRAQ or iTRAQH) reagent.", false},

     {MS_iTRAQ_reagent_113, "MS:1002623", "iTRAQ reagent 113", "The name of the sample labelled with the iTRAQ reagent 113.", false},

     {MS_iTRAQ_reagent_114, "MS:1002624", "iTRAQ reagent 114", "The name of the sample labelled with the iTRAQ reagent 114.", false},

     {MS_iTRAQ_reagent_115, "MS:1002625", "iTRAQ reagent 115", "The name of the sample labelled with the iTRAQ reagent 115.", false},

@@ -2606,7 +2658,7 @@ const TermInfo termInfos_[] =

     {MS_Morpheus_Morpheus_score, "MS:1002662", "Morpheus:Morpheus score", "Morpheus score for PSMs.", false},

     {MS_Morpheus_summed_Morpheus_score, "MS:1002663", "Morpheus:summed Morpheus score", "Summed Morpheus score for protein groups.", false},

     {MS_interaction_score_derived_from_cross_linking, "MS:1002664", "interaction score derived from cross-linking", "Parent term for interaction scores derived from cross-linking.", false},

-    {MS_regular_expression_for_interaction_scores_derived_from_cross_linking, "MS:1002665", "regular expression for interaction scores derived from cross-linking", "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\\{1\\}))", false},

+    {MS_regular_expression_for_interaction_scores_derived_from_cross_linking, "MS:1002665", "regular expression for interaction scores derived from cross-linking", "([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\\{1\\})).", false},

     {MS_impact_II, "MS:1002666", "impact II", "Bruker Daltonics' impact II.", false},

     {MS_impact_HD, "MS:1002667", "impact HD", "Bruker Daltonics' impact HD.", false},

     {MS_frag__iTRAQ_4plex_reporter_ion, "MS:1002668", "frag: iTRAQ 4plex reporter ion", "Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114.", false},

@@ -2619,7 +2671,7 @@ const TermInfo termInfos_[] =

     {MS_cross_linking_result_details, "MS:1002675", "cross-linking result details", "This subsection describes terms which can describe details of cross-linking results.", false},

     {MS_protein_pair_level_global_FDR, "MS:1002676", "protein-pair-level global FDR", "Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments.", false},

     {MS_residue_pair_level_global_FDR, "MS:1002677", "residue-pair-level global FDR", "Estimation of the global false discovery rate of residue-pairs in cross-linking experiments.", false},

-    {MS_supplemental_higher_energy_beam_type_collision_induced_dissociation, "MS:1002678", "supplemental higher energy beam-type collision-induced dissociation", "A supplemental collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.", false},

+    {MS_supplemental_beam_type_collision_induced_dissociation, "MS:1002678", "supplemental beam-type collision-induced dissociation", "A supplemental collision-induced dissociation process that occurs in a beam-type collision cell in addition to another primary type of dissociation.", false},

     {MS_supplemental_collision_induced_dissociation, "MS:1002679", "supplemental collision-induced dissociation", "The dissociation of an ion after supplemental collisional excitation.", false},

     {MS_supplemental_collision_energy, "MS:1002680", "supplemental collision energy", "Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion.", false},

     {MS_OpenXQuest_combined_score, "MS:1002681", "OpenXQuest:combined score", "OpenXQuest's combined score for a cross-link spectrum match.", false},

@@ -2647,6 +2699,315 @@ const TermInfo termInfos_[] =

     {MS_protein_level_result_list_attribute, "MS:1002704", "protein-level result list attribute", "Attribute of an entire protein list.", false},

     {MS_protein_level_result_list_statistic, "MS:1002705", "protein-level result list statistic", "A statistical metric of an entire protein list.", false},

     {MS_protein_group_level_result_list_statistic, "MS:1002706", "protein group-level result list statistic", "Attrbiute of an entire list of protein groups.", false},

+    {MS_Pegasus_BT, "MS:1002719", "Pegasus BT", "LECO bench-top GC time-of-flight mass spectrometer.", false},

+    {MS_MSPathFinder, "MS:1002720", "MSPathFinder", "PNNL top-down/bottom-up analysis software for identifying peptides and proteoforms in fragmentation mass spectra.", false},

+    {MS_MSPathFinder_SpecEValue, "MS:1002721", "MSPathFinder:SpecEValue", "MSPathFinder spectral E-value.", false},

+    {MS_MSPathFinder_EValue, "MS:1002722", "MSPathFinder:EValue", "MSPathFinder E-value.", false},

+    {MS_MSPathFinder_QValue, "MS:1002723", "MSPathFinder:QValue", "MSPathFinder Q-value.", false},

+    {MS_MSPathFinder_PepQValue, "MS:1002724", "MSPathFinder:PepQValue", "MSPathFinder peptide-level Q-value.", false},

+    {MS_MSPathFinder_RawScore, "MS:1002725", "MSPathFinder:RawScore", "MSPathFinder raw score.", false},

+    {MS_SYNAPT_G2_Si, "MS:1002726", "SYNAPT G2-Si", "Waters Corporation SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer.", false},

+    {MS_MALDI_SYNAPT_G2_Si, "MS:1002727", "MALDI SYNAPT G2-Si", "Waters Corporation MALDI SYNAPT G2-Si orthogonal acceleration time-of-flight mass spectrometer.", false},

+    {MS_Vion_IMS_QTof, "MS:1002728", "Vion IMS QTof", "Waters Corporation Vion IMS QTof orthogonal acceleration time-of-flight mass spectrometer.", false},

+    {MS_Xevo_G2_XS_Tof, "MS:1002729", "Xevo G2 XS Tof", "Waters Corporation Xevo G2 XS Tof orthogonal acceleration time-of-flight mass spectrometer.", false},

+    {MS_Xevo_TQ_XS, "MS:1002730", "Xevo TQ-XS", "Waters Corporation Xevo TQ-XS triple quadrupole mass spectrometer.", false},

+    {MS_Xevo_TQ_S_micro, "MS:1002731", "Xevo TQ-S micro", "Waters Corporation Xevo TQ-S micro triple quadrupole mass spectrometer.", false},

+    {MS_Orbitrap_Fusion_Lumos, "MS:1002732", "Orbitrap Fusion Lumos", "Thermo Scientific Orbitrap Fusion Lumos mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers.", false},

+    {MS_peptide_level_spectral_count, "MS:1002733", "peptide-level spectral count", "The number of MS2 spectra identified for a peptide sequence specified by the amino acid one-letter codes plus optional PTMs in spectral counting.", false},

+    {MS_peptide_ion_level_spectral_count, "MS:1002734", "peptide ion-level spectral count", "The number of MS2 spectra identified for a molecular ion defined by the peptide sequence represented by the amino acid one-letter codes, plus optional PTMs plus optional charged aducts plus the charge state, in spectral counting.", false},

+    {MS_feature_level_quantification_datatype, "MS:1002735", "feature-level quantification datatype", "The data type of the value reported in a QuantLayer for a feature.", false},

+    {MS_PSM_level_quantification_datatype, "MS:1002736", "PSM-level quantification datatype", "The data type of the value reported in a QuantLayer for a PSM.", false},

+    {MS_peptide_level_quantification_datatype, "MS:1002737", "peptide-level quantification datatype", "The data type of the value reported in a QuantLayer for a peptide.", false},

+    {MS_protein_level_quantification_datatype, "MS:1002738", "protein-level quantification datatype", "The data type of the value reported in a QuantLayer for a protein.", false},

+    {MS_protein_group_level_quantification_datatype, "MS:1002739", "protein group-level quantification datatype", "The data type of the value reported in a QuantLayer for a protein group.", false},

+    {MS_unmapped_peptide, "MS:1002740", "unmapped peptide", "Within the context of a proteogenomics approach, a peptide sequence that has not been mapped to a genomic location.", false},

+    {MS_unmapped_protein, "MS:1002741", "unmapped protein", "Within the context of a proteogenomics approach, a protein sequence that has not been mapped to a genomic location.", false},

+    {MS_noise_array, "MS:1002742", "noise array", "A data array of noise values.", false},

+    {MS_sampled_noise_m_z_array, "MS:1002743", "sampled noise m/z array", "A data array of parallel, independent m/z values for a sampling of noise across a spectrum (typically much smaller than MS:1000514, the m/z array).", false},

+    {MS_sampled_noise_intensity_array, "MS:1002744", "sampled noise intensity array", "A data array of intensity values for the amplitude of noise variation superposed on the baseline (MS:1002745) across a spectrum (for use with MS:1002743, sampled noise m/z array).", false},

+    {MS_sampled_noise_baseline_array, "MS:1002745", "sampled noise baseline array", "A data array of baseline intensity values (the intensity in the absence of analytes) for a sampling of noise across a spectrum (for use with MS:1002743, sampled noise m/z array).", false},

+    {MS_MS_Numpress_linear_prediction_compression_followed_by_zlib_compression, "MS:1002746", "MS-Numpress linear prediction compression followed by zlib compression", "Compression using MS-Numpress linear prediction compression and zlib.", false},

+    {MS_MS_Numpress_positive_integer_compression_followed_by_zlib_compression, "MS:1002747", "MS-Numpress positive integer compression followed by zlib compression", "Compression using MS-Numpress positive integer compression and zlib.", false},

+    {MS_MS_Numpress_short_logged_float_compression_followed_by_zlib_compression, "MS:1002748", "MS-Numpress short logged float compression followed by zlib compression", "Compression using MS-Numpress short logged float compression and zlib.", false},

+    {MS_Mascot_IntegratedSpectralLibrarySearch, "MS:1002749", "Mascot:IntegratedSpectralLibrarySearch", "Means that Mascot has integrated the search results of database and spectral library search into a single data set.", false},

+    {MS_NIST_MSPepSearch, "MS:1002750", "NIST MSPepSearch", "Search tool of the NIST (National Institute of Standards and Technology) for spectral library searches.", false},

+    {MS_NIST_MSP_format, "MS:1002751", "NIST MSP format", "MSP text format defined by the NIST.", false},

+    {MS_database_type_spectral_library, "MS:1002752", "database type spectral library", "Database containing spectra.", false},

+    {MS_value_between_0_and_1000_inclusive, "MS:1002753", "value between 0 and 1000 inclusive", "Value range for scores.", false},

+    {MS_MSPepSearch_score, "MS:1002754", "MSPepSearch:score", "MSPepSearch score (0 for entirely dissimilar and 1000 for identical observed spectrum and library spectrum.", false},

+    {MS_combined_ms_ms___spectral_library_search, "MS:1002755", "combined ms-ms + spectral library search", "A combined MS2 (with fragment ions) and spectral library search.", false},

+    {MS_iodoTMT_quantitation_analysis, "MS:1002756", "iodoTMT quantitation analysis", "Quantitation analysis using the Thermo Fisher sulfhydryl-reactive iodo tandem mass tag (iodoTMT) labelling workflow.", false},

+    {MS_glyco_TMT_quantitation_analysis, "MS:1002757", "glyco-TMT quantitation analysis", "Quantitation analysis using the Thermo Fisher carbonyl-reactive glyco-tandem mass tag (glyco-TMT) labelling workflow.", false},

+    {MS_aminoxyTMT_quantitation_analysis, "MS:1002758", "aminoxyTMT quantitation analysis", "Quantitation analysis using the Thermo Fisher carbonyl-reactive aminoxy tandem mass tag (aminoxyTMT) labelling workflow.", false},

+    {MS_hydrazideTMT_quantitation_analysis, "MS:1002759", "hydrazideTMT quantitation analysis", "Quantitation analysis using the Thermo Fisher carbonyl-reactive hydrazide tandem mass tag (hydrazide-TMT) labelling workflow.", false},

+    {MS_iTRAQH_quantitation_analysis, "MS:1002760", "iTRAQH quantitation analysis", "Quantification analysis using the carbonyl-reactive isobaric tags for relative and absolute quantification hydrazide (iTRAQH) labelling workflow.", false},

+    {MS_DiART_quantitation_analysis, "MS:1002761", "DiART quantitation analysis", "Quantification analysis using the amine-reactive deuterium isobaric amine reactive tag (DiART) labelling workflow.", false},

+    {MS_DiLeu_quantitation_analysis, "MS:1002762", "DiLeu quantitation analysis", "Quantification analysis using the amine-reactive dimethyl leucine (DiLeu) tag labelling workflow.", false},

+    {MS_TMT_reagent_127N, "MS:1002763", "TMT reagent 127N", "The name of the sample labelled with the TMT reagent 127N.", false},

+    {MS_TMT_reagent_127C, "MS:1002764", "TMT reagent 127C", "The name of the sample labelled with the TMT reagent 127C.", false},

+    {MS_TMT_reagent_128N, "MS:1002765", "TMT reagent 128N", "The name of the sample labelled with the TMT reagent 128N.", false},

+    {MS_TMT_reagent_128C, "MS:1002766", "TMT reagent 128C", "The name of the sample labelled with the TMT reagent 128C.", false},

+    {MS_TMT_reagent_129N, "MS:1002767", "TMT reagent 129N", "The name of the sample labelled with the TMT reagent 129N.", false},

+    {MS_TMT_reagent_129C, "MS:1002768", "TMT reagent 129C", "The name of the sample labelled with the TMT reagent 129C.", false},

+    {MS_TMT_reagent_130N, "MS:1002769", "TMT reagent 130N", "The name of the sample labelled with the TMT reagent 130N.", false},

+    {MS_TMT_reagent_130C, "MS:1002770", "TMT reagent 130C", "The name of the sample labelled with the TMT reagent 130C.", false},

+    {MS_DiART_reagent, "MS:1002771", "DiART reagent", "Deuterium isobaric amine reactive tag labeling reagent.", false},

+    {MS_DiART_reagent_114, "MS:1002772", "DiART reagent 114", "The name of the sample labelled with the DiART reagent 114.", false},

+    {MS_DiART_reagent_115, "MS:1002773", "DiART reagent 115", "The name of the sample labelled with the DiART reagent 115.", false},

+    {MS_DiART_reagent_116, "MS:1002774", "DiART reagent 116", "The name of the sample labelled with the DiART reagent 116.", false},

+    {MS_DiART_reagent_117, "MS:1002775", "DiART reagent 117", "The name of the sample labelled with the DiART reagent 117.", false},

+    {MS_DiART_reagent_118, "MS:1002776", "DiART reagent 118", "The name of the sample labelled with the DiART reagent 118.", false},

+    {MS_DiART_reagent_119, "MS:1002777", "DiART reagent 119", "The name of the sample labelled with the DiART reagent 119.", false},

+    {MS_DiLeu_reagent, "MS:1002778", "DiLeu reagent", "Dimethyl leucine labeling reagent.", false},

+    {MS_DiLeu_reagent_115, "MS:1002779", "DiLeu reagent 115", "The name of the sample labelled with the DiLeu reagent 115.", false},

+    {MS_DiLeu_reagent_116, "MS:1002780", "DiLeu reagent 116", "The name of the sample labelled with the DiLeu reagent 116.", false},

+    {MS_DiLeu_reagent_117, "MS:1002781", "DiLeu reagent 117", "The name of the sample labelled with the DiLeu reagent 117.", false},

+    {MS_DiLeu_reagent_118, "MS:1002782", "DiLeu reagent 118", "The name of the sample labelled with the DiLeu reagent 118.", false},

+    {MS_6550_iFunnel_Q_TOF_LC_MS, "MS:1002783", "6550 iFunnel Q-TOF LC/MS", "The 6550 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6550A_iFunnel_Q_TOF_LC_MS, "MS:1002784", "6550A iFunnel Q-TOF LC/MS", "The 6550A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6520B_Q_TOF_LC_MS, "MS:1002785", "6520B Q-TOF LC/MS", "The 6520B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6530A_Q_TOF_LC_MS, "MS:1002786", "6530A Q-TOF LC/MS", "The 6530A Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6530B_Q_TOF_LC_MS, "MS:1002787", "6530B Q-TOF LC/MS", "The 6530B Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6538_Q_TOF_LC_MS, "MS:1002788", "6538 Q-TOF LC/MS", "The 6538 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6540_Q_TOF_LC_MS, "MS:1002789", "6540 Q-TOF LC/MS", "The 6540 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6542_Q_TOF_LC_MS, "MS:1002790", "6542 Q-TOF LC/MS", "The 6542 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6545_Q_TOF_LC_MS, "MS:1002791", "6545 Q-TOF LC/MS", "The 6545 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6560_Q_TOF_LC_MS, "MS:1002792", "6560 Q-TOF LC/MS", "The 6560 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6570_Q_TOF_LC_MS, "MS:1002793", "6570 Q-TOF LC/MS", "The 6570 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6120B_Quadrupole_LC_MS, "MS:1002794", "6120B Quadrupole LC/MS", "The 6120B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers.", false},

+    {MS_6150_Quadrupole_LC_MS, "MS:1002795", "6150 Quadrupole LC/MS", "The 6150 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers.", false},

+    {MS_6224_Time_of_Flight_LC_MS, "MS:1002796", "6224 Time-of-Flight LC/MS", "The 6224 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6230A_Time_of_Flight_LC_MS, "MS:1002797", "6230A Time-of-Flight LC/MS", "The 6230A Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6230B_Time_of_Flight_LC_MS, "MS:1002798", "6230B Time-of-Flight LC/MS", "The 6230B Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer.", false},

+    {MS_6430_Triple_Quadrupole_LC_MS, "MS:1002799", "6430 Triple Quadrupole LC/MS", "The 6430 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.", false},

+    {MS_6495A_Triple_Quadrupole_LC_MS, "MS:1002800", "6495A Triple Quadrupole LC/MS", "The 6495A Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.", false},

+    {MS_6495B_Triple_Quadrupole_LC_MS, "MS:1002801", "6495B Triple Quadrupole LC/MS", "The 6495B Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.", false},

+    {MS_7000A_Triple_Quadrupole_GC_MS, "MS:1002802", "7000A Triple Quadrupole GC/MS", "The 7000A Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.", false},

+    {MS_7000B_Triple_Quadrupole_GC_MS, "MS:1002803", "7000B Triple Quadrupole GC/MS", "The 7000B Quadrupole GC/MS system is a Agilent gas chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.", false},

+    {MS_7800_Quadrupole_ICP_MS, "MS:1002804", "7800 Quadrupole ICP-MS", "The 7800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer.", false},

+    {MS_8800_Triple_Quadrupole_ICP_MS, "MS:1002805", "8800 Triple Quadrupole ICP-MS", "The 8800 Quadrupole ICP-MS system is a Agilent inductively couple plasma instrument combined with a Agilent quadrupole mass spectrometer.", false},

+    {MS_ion, "MS:1002806", "ion", "An atomic or molecular species having a net positive or negative electric charge.", false},

+    {MS_positive_mode_adduct_ion, "MS:1002807", "positive mode adduct ion", "Adduct ion with positive ionization.", false},

+    {MS_negative_mode_adduct_ion, "MS:1002808", "negative mode adduct ion", "Adduct ion with negative ionization.", false},

+    {MS_adduct_ion_attribute, "MS:1002809", "adduct ion attribute", "Attribute describing an adduct formation.", false},

+    {MS_adduct_ion_mass, "MS:1002810", "adduct ion mass", "Mass of an adduct formation specified by the given value.", false},

+    {MS_adduct_ion_isotope, "MS:1002811", "adduct ion isotope", "Isotope of the matrix molecule M of an adduct formation.", false},

+    {MS_Regular_expression_for_adduct_ion_formula, "MS:1002812", "Regular expression for adduct ion formula", "(\\[[:digit:]{0,1}M([+][:digit:]{0,1}(H|K|(Na)|(Li)|(Cl)|(Br)|(NH3)|(NH4)|(CH3OH)|(IsoProp)|(DMSO)|(FA)|(Hac)|(TFA)|(NaCOOH)|(HCOOH)|(CF3COOH)|(ACN))){0,}([-][:digit:]{0,1}(H|(H2O)|(CH2)|(CH4)|(NH3)|(CO)|(CO2)|(COCH2)|(HCOOH)|(C2H4)|(C4H8)|(C3H2O3)|(C5H8O4)|(C6H10O4)|(C6H10O5)|(C6H8O6))){0,}\\][:digit:]{0,1}[+-]).", false},

+    {MS_adduct_ion_formula, "MS:1002813", "adduct ion formula", "Adduct formation formula specified by the given value.", false},

+    {MS_volt_second_per_square_centimeter, "MS:1002814", "volt-second per square centimeter", "An electrical mobility unit that equals the speed [cm/s] an ion reaches when pulled through a gas by a Voltage[V] over a certain distance [cm].", false},

+    {MS_inverse_reduced_ion_mobility, "MS:1002815", "inverse reduced ion mobility", "Ion mobility measurement for an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This might refer to the central value of a bin into which all ions within a narrow range of mobilities have been aggregated.", false},

+    {MS_mean_ion_mobility_array, "MS:1002816", "mean ion mobility array", "Array of drift times, averaged from a matrix of binned m/z and ion mobility values, corresponding to a spectrum of individual peaks encoded with an m/z array.", false},

+    {MS_Bruker_TDF_format, "MS:1002817", "Bruker TDF format", "Bruker TDF raw file format.", false},

+    {MS_Bruker_TDF_nativeID_format, "MS:1002818", "Bruker TDF nativeID format", "Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.", false},

+    {MS_Bruker_TDF_nativeID_format__combined_spectra, "MS:1002819", "Bruker TDF nativeID format, combined spectra", "Bruker TDF comma separated list of spectra that have been combined prior to searching or interpretation.", false},

+    {MS_M_H_ion_1002820, "MS:1002820", "M+H ion (MS:1002820)", "M+H ion from positive ion mode (M in the property ionMass denotes the mass of the neutral molecule).", false},

+    {MS_M_H_ion_1002821, "MS:1002821", "M-H ion (MS:1002821)", "M-H ion from negative ion mode (M in the property ionMass denotes the mass of the neutral molecule).", false},

+    {MS_OpenMS_file_format, "MS:1002822", "OpenMS file format", "File format developed by the OpenMS team.", false},

+    {MS_idXML, "MS:1002823", "idXML", "OpenMS intermediate identification format.", false},

+    {MS_featureXML, "MS:1002824", "featureXML", "OpenMS feature file format.", false},

+    {MS_consensusXML, "MS:1002825", "consensusXML", "OpenMS consensus map format.", false},

+    {MS_MetaMorpheus, "MS:1002826", "MetaMorpheus", "MetaMorpheus search engine.", false},

+    {MS_MetaMorpheus_score, "MS:1002827", "MetaMorpheus:score", "MetaMorpheus score for PSMs.", false},

+    {MS_MetaMorpheus_protein_score, "MS:1002828", "MetaMorpheus:protein score", "MetaMorpheus score for protein groups.", false},

+    {MS_XCMS_into, "MS:1002829", "XCMS:into", "Feature intensity produced by XCMS findPeaks() from integrated peak intensity.", false},

+    {MS_XCMS_intf, "MS:1002830", "XCMS:intf", "Feature intensity produced by XCMS findPeaks() from baseline corrected integrated peak intensity.", false},

+    {MS_XCMS_maxo, "MS:1002831", "XCMS:maxo", "Feature intensity produced by XCMS findPeaks() from maximum peak intensity.", false},

+    {MS_XCMS_area, "MS:1002832", "XCMS:area", "Feature intensity produced by XCMS findPeaks() from feature area that is not normalized by the scan rate.", false},

+    {MS_alternating_polarity_mode, "MS:1002833", "alternating polarity mode", "Polarities of the scans of a run are alternating, i.e. both positive and negative mode scans are acquired.", false},

+    {MS_ProteomeDiscoverer_Delta_Score, "MS:1002834", "ProteomeDiscoverer:Delta Score", "The Delta Score reported by Proteome Discoverer version 2.", false},

+    {MS_LTQ_Orbitrap_Classic, "MS:1002835", "LTQ Orbitrap Classic", "Thermo Fisher Scientific LTQ Orbitrap Classic.", false},

+    {MS_iProX_dataset_identifier, "MS:1002836", "iProX dataset identifier", "Dataset identifier issued by the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.", false},

+    {MS_iProX_dataset_URI, "MS:1002837", "iProX dataset URI", "URI that allows the access to one dataset in the iProX repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.", false},

+    {MS_mzMLb_format, "MS:1002838", "mzMLb format", "mzMLb file format, mzML encapsulated within HDF5.", false},

+    {MS_Conversion_to_mzMLb, "MS:1002839", "Conversion to mzMLb", "Conversion of a file format to Proteomics Standards Initiative mzMLb file format.", false},

+    {MS_external_reference_data, "MS:1002840", "external reference data", "Data belonging to an external reference.", false},

+    {MS_external_HDF5_dataset, "MS:1002841", "external HDF5 dataset", "The HDF5 dataset location containing the binary data, relative to the dataset containing the mzML. Also indicates that there is no data in the <binary> section of the BinaryDataArray.", false},

+    {MS_external_offset, "MS:1002842", "external offset", "The position in the external data where the array begins.", false},

+    {MS_external_array_length, "MS:1002843", "external array length", "Describes how many fields an array contains.", false},

+    {MS_Experiment_additional_parameter, "MS:1002844", "Experiment additional parameter", "Root node for terms relating to the description of an Experiment in relation to the PRIDE-XML element ExperimentCollection/Experiment/additional/cvParam.", false},

+    {MS_Associated_file_URI, "MS:1002845", "Associated file URI", "URI of one external file associated to the PRIDE experiment (maybe through a PX submission).", false},

+    {MS_Associated_raw_file_URI, "MS:1002846", "Associated raw file URI", "URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission).", false},

+    {MS_ProteomeCentral_dataset_URI, "MS:1002847", "ProteomeCentral dataset URI", "URI associated to one PX submission in ProteomeCentral.", false},

+    {MS_Result_file_URI, "MS:1002848", "Result file URI", "URI of one file labeled as 'Result', associated to one PX submission.", false},

+    {MS_Search_engine_output_file_URI, "MS:1002849", "Search engine output file URI", "URI of one search engine output file associated to one PX submission.", false},

+    {MS_Peak_list_file_URI, "MS:1002850", "Peak list file URI", "URI of one of one search engine output file associated to one PX submission.", false},

+    {MS_Other_type_file_URI, "MS:1002851", "Other type file URI", "URI of one file labeled as 'Other', associated to one PX submission.", false},

+    {MS_Dataset_FTP_location, "MS:1002852", "Dataset FTP location", "FTP location of one entire PX data set.", false},

+    {MS_Dataset_with_no_associated_published_manuscript, "MS:1002853", "Dataset with no associated published manuscript", "A dataset which does not have an associated published manuscript.", false},

+    {MS_Peer_reviewed_dataset, "MS:1002854", "Peer-reviewed dataset", "Dataset has been peer-reviewed somehow.", false},

+    {MS_Non_peer_reviewed_dataset, "MS:1002855", "Non peer-reviewed dataset", "Dataset that has not been peer-reviewed by any means.", false},

+    {MS_Supported_dataset_by_repository, "MS:1002856", "Supported dataset by repository", "The PX dataset is supported by and is available through the submission repository.", false},

+    {MS_Unsupported_dataset_by_repository, "MS:1002857", "Unsupported dataset by repository", "The PX dataset is not fully supported by the submission repository.", false},

+    {MS_Dataset_with_its_publication_pending, "MS:1002858", "Dataset with its publication pending", "A dataset which has an associated manuscript pending for publication.", false},

+    {MS_Additional_associated_raw_file_URI, "MS:1002859", "Additional associated raw file URI", "Additional URI of one raw data file associated to the PRIDE experiment (maybe through a PX submission). The URI is provided via an additional resource to PRIDE.", false},

+    {MS_Gel_image_file_URI, "MS:1002860", "Gel image file URI", "URI of one gel image file associated to one PX submission.", false},

+    {MS_Reprocessed_complete_dataset, "MS:1002861", "Reprocessed complete dataset", "All the raw files included in the original dataset (or group of original datasets) have been reanalysed.", false},

+    {MS_Reprocessed_subset_dataset, "MS:1002862", "Reprocessed subset dataset", "A subset of the raw files included in the original dataset (or group of original datasets) has been reanalysed.", false},

+    {MS_Data_derived_from_previous_dataset, "MS:1002863", "Data derived from previous dataset", "One dataset is a reanalysis of previously published data.", false},

+    {MS_No_PTMs_are_included_in_the_dataset, "MS:1002864", "No PTMs are included in the dataset", "No post-translational-modifications are been included in the identified peptides of one dataset.", false},

+    {MS_Accepted_manuscript, "MS:1002865", "Accepted manuscript", "A dataset has one associated manuscript, which has been accepted but no PubMedID is available yet.", false},

+    {MS_Reference, "MS:1002866", "Reference", "Literature reference associated with one dataset (including the authors, title, year and journal details). The value field can be used for the PubMedID, or to specify if one manuscript is just submitted or accepted, but it does not have a PubMedID yet.", false},

+    {MS_Experimental_information_has_been_refined_since_this_experiment_was_originally_made_publicly_available, "MS:1002867", "Experimental information has been refined since this experiment was originally made publicly available", "This means that the experimental information available has been improved, for instance precursor charges were added.", false},

+    {MS_Original_data, "MS:1002868", "Original data", "One dataset is not a reanalysis of previously published data.", false},

+    {MS_mzR, "MS:1002869", "mzR", "Bioconductor package mzR for reading and writing mass spectrometry data files.", false},

+    {MS_MSnbase, "MS:1002870", "MSnbase", "Bioconductor package MSnbase provides infrastructure for manipulation, processing and visualization of mass spectrometry and proteomics data, ranging from raw to quantitative and annotated data.", false},

+    {MS_CAMERA, "MS:1002871", "CAMERA", "Bioconductor package CAMERA for annotation of peak lists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments.", false},

+    {MS_Panorama_Public_dataset_identifier, "MS:1002872", "Panorama Public dataset identifier", "Dataset identifier issued by the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.", false},

+    {MS_Panorama_Public_dataset_URI, "MS:1002873", "Panorama Public dataset URI", "URI that allows the access to one dataset in the Panorama Public repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.", false},

+    {MS_TSQ_Altis, "MS:1002874", "TSQ Altis", "Thermo Scientific TSQ Altis Triple Quadrupole MS.", false},

+    {MS_TSQ_Quantis, "MS:1002875", "TSQ Quantis", "Thermo Scientific TSQ Quantis Triple Quadrupole MS.", false},

+    {MS_TSQ_9000, "MS:1002876", "TSQ 9000", "Thermo Scientific TSQ 9000 Triple Quadrupole MS.", false},

+    {MS_Q_Exactive_HF_X, "MS:1002877", "Q Exactive HF-X", "Thermo Scientific Q Exactive HF-X Hybrid Quadrupole Orbitrap MS.", false},

+    {MS_small_molecule_analysis_software, "MS:1002878", "small molecule analysis software", "Software for the analysis of small molecules.", false},

+    {MS_Progenesis_QI, "MS:1002879", "Progenesis QI", "Metabolomics analysis software for LC-MS data from Nonlinear Dynamics.", false},

+    {MS_Compound_Discoverer, "MS:1002880", "Compound Discoverer", "Metabolomics analysis software from Thermo Fisher Scientific.", false},

+    {MS_MyCompoundID, "MS:1002881", "MyCompoundID", "Metabolite identification tool MyCompoundID.", false},

+    {MS_study_variable_average_function, "MS:1002882", "study variable average function", "Function used to calculate the study variable quantification value.", false},

+    {MS_median, "MS:1002883", "median", "Median function.", false},

+    {MS_study_variable_variation_function, "MS:1002884", "study variable variation function", "Function used to calculate the study variable quantification variation value.", false},

+    {MS_standard_error, "MS:1002885", "standard error", "Standard error function.", false},

+    {MS_small_molecule_quantification_datatype, "MS:1002886", "small molecule quantification datatype", "The value reported in a small molecule quantification.", false},

+    {MS_Progenesis_QI_normalised_abundance, "MS:1002887", "Progenesis QI normalised abundance", "The normalised abundance produced by Progenesis QI LC-MS.", false},

+    {MS_small_molecule_confidence_measure, "MS:1002888", "small molecule confidence measure", "The confidence score produced by a small molecule analysis software.", false},

+    {MS_Progenesis_MetaScope_score, "MS:1002889", "Progenesis MetaScope score", "The confidence score produced by Progenesis QI.", false},

+    {MS_fragmentation_score, "MS:1002890", "fragmentation score", "The fragmentation confidence score.", false},

+    {MS_isotopic_fit_score, "MS:1002891", "isotopic fit score", "The isotopic fit confidence score.", false},

+    {MS_ion_mobility_attribute, "MS:1002892", "ion mobility attribute", "An attribute describing ion mobility searches.", false},

+    {MS_ion_mobility_array, "MS:1002893", "ion mobility array", "An array of ion mobility data.", false},

+    {MS_InChIKey, "MS:1002894", "InChIKey", "Unique chemical structure identifier for chemical compounds.", false},

+    {MS_small_molecule_identification_attribute, "MS:1002895", "small molecule identification attribute", "Compound identification information.", false},

+    {MS_compound_identification_confidence_level, "MS:1002896", "compound identification confidence level", "Confidence level for annotation of identified compounds as defined by the Metabolomics Standards Initiative (MSI). The value slot can have the values 'Level 0' until 'Level 4'.", false},

+    {MS_isotopomer_peak_OBSOLETE, "MS:1002897", "isotopomer peak", "Identifies a peak when no de-isotoping has been performed. The value slot reports the isotopomer peak, e.g. '2H', '13C', '15N', '18O', '31P'.", true},

+    {MS_Shimadzu_Biotech_QTOF_nativeID_format, "MS:1002898", "Shimadzu Biotech QTOF nativeID format", "Native format defined by scan=xsd:nonNegativeInteger.", false},

+    {MS_msalign_format, "MS:1002899", "msalign format", "msalign file format.", false},

+    {MS_feature_format, "MS:1002900", "feature format", "TopFD feature file format.", false},

+    {MS_TopPIC, "MS:1002901", "TopPIC", "TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization.", false},

+    {MS_TopFD, "MS:1002902", "TopFD", "Top-down mass spectral feature detection.", false},

+    {MS_TopMG, "MS:1002903", "TopMG", "A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra.", false},

+    {MS_proteoform_level_identification_attribute, "MS:1002904", "proteoform-level identification attribute", "Proteoform level information.", false},

+    {MS_proteoform_level_identification_statistic, "MS:1002905", "proteoform-level identification statistic", "Identification confidence metric for a proteoform.", false},

+    {MS_search_engine_specific_score_for_proteoforms, "MS:1002906", "search engine specific score for proteoforms", "Search engine specific proteoform scores.", false},

+    {MS_proteoform_level_global_FDR, "MS:1002907", "proteoform-level global FDR", "Estimation of the global false discovery rate of proteoforms.", false},

+    {MS_proteoform_level_local_FDR, "MS:1002908", "proteoform-level local FDR", "Estimation of the local false discovery rate of proteoforms.", false},

+    {MS_proteoform_level_statistical_threshold, "MS:1002909", "proteoform-level statistical threshold", "Estimated statistical threshold at proteoform-level.", false},

+    {MS_proteoform_level_global_FDR_threshold, "MS:1002910", "proteoform-level global FDR threshold", "Threshold for the global false discovery rate of proteoforms.", false},

+    {MS_proteoform_level_local_FDR_threshold, "MS:1002911", "proteoform-level local FDR threshold", "Threshold for the local false discovery rate of proteoforms.", false},

+    {MS_TopPIC_input_parameter, "MS:1002912", "TopPIC input parameter", "Search engine input parameters specific to TopPIC.", false},

+    {MS_TopPIC_fixed_modification, "MS:1002913", "TopPIC:fixed modification", "Fixed modifications for TopPIC searching.", false},

+    {MS_TopPIC_N_term_form, "MS:1002914", "TopPIC:N-term form", "N-terminal forms of proteins allowed in TopPIC searching.", false},

+    {MS_TopPIC_error_tolerance, "MS:1002915", "TopPIC:error tolerance", "Error tolerance for precursor and fragment masses in PPM.", false},

+    {MS_TopPIC_max_shift, "MS:1002916", "TopPIC:max shift", "Maximum value of the mass shift (in Dalton) of an unexpected modification.", false},

+    {MS_TopPIC_min_shift, "MS:1002917", "TopPIC:min shift", "Minimum value of the mass shift (in Dalton) of an unexpected modification.", false},

+    {MS_TopPIC_shift_num, "MS:1002918", "TopPIC:shift num", "Maximum number of unexpected modifications in a proteoform spectrum match.", false},

+    {MS_TopPIC_spectral_cutoff_type, "MS:1002919", "TopPIC:spectral cutoff type", "Spectrum-level cutoff type for filtering identified proteoform spectrum matches.", false},

+    {MS_TopPIC_spectral_cutoff_value, "MS:1002920", "TopPIC:spectral cutoff value", "Spectrum-level cutoff value for filtering identified proteoform spectrum matches.", false},

+    {MS_TopPIC_proteoform_level_cutoff_type, "MS:1002921", "TopPIC:proteoform-level cutoff type", "Proteoform-level cutoff type for filtering identified proteoform spectrum matches.", false},

+    {MS_TopPIC_proteoform_level_cutoff_value, "MS:1002922", "TopPIC:proteoform-level cutoff value", "Proteoform-level cutoff value for filtering identified proteoform spectrum matches.", false},

+    {MS_TopPIC_generating_function, "MS:1002923", "TopPIC:generating function", "P-value and E-value estimation using generating function.", false},

+    {MS_TopPIC_combined_spectrum_number, "MS:1002924", "TopPIC:combined spectrum number", "Number of combined spectra.", false},

+    {MS_TopPIC_mod_file, "MS:1002925", "TopPIC:mod file", "The text file containing the information of common PTMs.", false},

+    {MS_TopPIC_thread_number, "MS:1002926", "TopPIC:thread number", "Number of threads used in TopPIC.", false},

+    {MS_TopPIC_use_TopFD_feature, "MS:1002927", "TopPIC:use TopFD feature", "Proteoform identification using TopFD feature file.", false},

+    {MS_TopPIC_spectral_E_value, "MS:1002928", "TopPIC:spectral E-value", "TopPIC spectrum-level E-value.", false},

+    {MS_TopPIC_spectral_FDR, "MS:1002929", "TopPIC:spectral FDR", "TopPIC spectrum-level FDR.", false},

+    {MS_TopPIC_proteoform_level_FDR, "MS:1002930", "TopPIC:proteoform-level FDR", "TopPIC proteoform-level FDR.", false},

+    {MS_TopPIC_spectral_p_value, "MS:1002931", "TopPIC:spectral p-value", "TopPIC spectrum-level p-value.", false},

+    {MS_TopPIC_MIScore, "MS:1002932", "TopPIC:MIScore", "Modification identification score.", false},

+    {MS_TopPIC_MIScore_threshold, "MS:1002933", "TopPIC:MIScore threshold", "TopPIC:MIScore threshold.", false},

+    {MS_TopMG_input_parameter, "MS:1002934", "TopMG input parameter", "Search engine input parameters specific to TopMG.", false},

+    {MS_TopMG_fixed_modification, "MS:1002935", "TopMG:fixed modification", "Fixed modifications for TopMG searching.", false},

+    {MS_TopMG_N_term_form, "MS:1002936", "TopMG:N-term form", "N-terminal forms of proteins allowed in TopMG searching.", false},

+    {MS_TopMG_error_tolerance, "MS:1002937", "TopMG:error tolerance", "Error tolerance for precursor and fragment masses in PPM.", false},

+    {MS_TopMG_max_shift, "MS:1002938", "TopMG:max shift", "Maximum value of the mass shift (in Dalton).", false},

+    {MS_TopMG_spectral_cutoff_type, "MS:1002939", "TopMG:spectral cutoff type", "Spectrum-level cutoff type for filtering identified proteoform spectrum matches.", false},

+    {MS_TopMG_spectral_cutoff_value, "MS:1002940", "TopMG:spectral cutoff value", "Spectrum-level cutoff value for filtering identified proteoform spectrum matches.", false},

+    {MS_TopMG_proteoform_level_cutoff_type, "MS:1002941", "TopMG:proteoform-level cutoff type", "Proteoform-level cutoff type for filtering identified proteoform spectrum matches.", false},

+    {MS_TopMG_proteoform_level_cutoff_value, "MS:1002942", "TopMG:proteoform-level cutoff value", "Proteoform-level cutoff value for filtering identified proteoform spectrum matches.", false},

+    {MS_TopMG_mod_file, "MS:1002943", "TopMG:mod file", "The text file containing the information of common PTMs.", false},

+    {MS_TopMG_thread_number, "MS:1002944", "TopMG:thread number", "Number of threads used in TopMG.", false},

+    {MS_TopMG_use_TopFD_feature, "MS:1002945", "TopMG:use TopFD feature", "Proteoform identification using TopFD feature file.", false},

+    {MS_TopMG_proteoform_graph_gap_size, "MS:1002946", "TopMG:proteoform graph gap size", "Gap size in constructing proteoform graph.", false},

+    {MS_TopMG_variable_PTM_number, "MS:1002947", "TopMG:variable PTM number", "Maximum number of variable PTMs.", false},

+    {MS_TopMG_variable_PTM_number_in_proteoform_graph_gap, "MS:1002948", "TopMG:variable PTM number in proteoform graph gap", "Maximum number of variable PTMs in a proteoform graph gap.", false},

+    {MS_TopMG_use_ASF_DIAGONAL, "MS:1002949", "TopMG:use ASF-DIAGONAL", "Protein filtering using ASF-DIAGONAL method.", false},

+    {MS_TopMG_spectral_E_value, "MS:1002950", "TopMG:spectral E-value", "TopMG spectrum-level E-value.", false},

+    {MS_TopMG_spectral_FDR, "MS:1002951", "TopMG:spectral FDR", "TopMG spectrum-level FDR.", false},

+    {MS_TopMG_proteoform_level_FDR, "MS:1002952", "TopMG:proteoform-level FDR", "TopMG proteoform-level FDR.", false},

+    {MS_TopMG_spectral_p_value, "MS:1002953", "TopMG:spectral p-value", "TopMG spectrum-level p-value.", false},

+    {MS_collisional_cross_sectional_area, "MS:1002954", "collisional cross sectional area", "Structural molecular descriptor for the effective interaction area between the ion and neutral gas measured in ion mobility mass spectrometry.", false},

+    {MS_hr_ms_compound_identification_confidence_level, "MS:1002955", "hr-ms compound identification confidence level", "Refined High Resolution mass spectrometry confidence level for annotation of identified compounds as proposed by Schymanski et al. The value slot can have the values 'Level 1', 'Level 2', 'Level 2a', 'Level 2b', 'Level 3', 'Level 4', and 'Level 5'.", false},

+    {MS_isotopic_ion_MS_peak, "MS:1002956", "isotopic ion MS peak", "A mass spectrometry peak that represents one or more isotopic ions. The value slot contains a description of the represented isotope set, e.g. 'M+1 peak'.", false},

+    {MS_isotopomer_MS_peak, "MS:1002957", "isotopomer MS peak", "The described isotopomer mass spectrometric signal. The value slot contains a description of the represented isotopomer, e.g. '13C peak', '15N peak', '2H peak', '18O peak' or '31P peak'.", false},

+    {MS_isotopologue_MS_peak, "MS:1002958", "isotopologue MS peak", "The described isotopologue mass spectrometric signal. The value slot contains a description of the represented isotopologue, e.g. '13C1 peak' or '15N1 peak'.", false},

+    {MS_isomer, "MS:1002959", "isomer", "One of several species (or molecular entities) that have the same atomic composition (molecular formula) but different line formulae or different stereochemical formulae.", false},

+    {MS_isotopomer, "MS:1002960", "isotopomer", "An isomer that differs from another only in the spatial distribution of the constitutive isotopic atoms.", false},

+    {MS_isotopologue, "MS:1002961", "isotopologue", "A molecular entity that differs only in isotopic composition (number of isotopic substitutions).", false},

+    {MS_mean, "MS:1002962", "mean", "The arithmetic mean.", false},

+    {MS_variation_coefficient, "MS:1002963", "variation coefficient", "The coefficient of variation.", false},

+    {MS_lipidomics_analysis_software, "MS:1002964", "lipidomics analysis software", "Lipidomics analysis software.", false},

+    {MS_Lipid_Data_Analyzer, "MS:1002965", "Lipid Data Analyzer", "Lipid Data Analyzer software for lipid quantification.", false},

+    {MS_chrom_format, "MS:1002966", "chrom format", "The Lipid Data Analyzer native chrom format.", false},

+    {MS_LipidHunter, "MS:1002967", "LipidHunter", "Software for identification of phospholipids by high-throughput processing of LC-MS and shotgun lipidomics datasets.", false},

+    {MS_LipidXplorer, "MS:1002968", "LipidXplorer", "Software for consensual cross-platform lipidomics.", false},

+    {MS_LipidMatch, "MS:1002969", "LipidMatch", "An automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.", false},

+    {MS_Greazy, "MS:1002970", "Greazy", "Open-source software for automated phospholipid tandem mass spectrometry identification.", false},

+    {MS_LipidBlast, "MS:1002971", "LipidBlast", "LC-MS-based lipidomics and automated identification of lipids using the LipidBlast in-silico MS/MS library.", false},

+    {MS_Lipid_Pro, "MS:1002972", "Lipid-Pro", "A computational lipid identification solution for untargeted lipidomics on data-independent acquisition tandem mass spectrometry platforms.", false},

+    {MS_LipidFinder, "MS:1002973", "LipidFinder", "A computational workflow for the discovery of lipids for the identification of eicosanoid-phosphoinositides in platelets.", false},

+    {MS_LipiDex, "MS:1002974", "LipiDex", "An integrated software package for high-confidence lipid identification.", false},

+    {MS_LIQUID, "MS:1002975", "LIQUID", "An-open source software for identifying lipids in LC-MS/MS-based lipidomics data.", false},

+    {MS_ALEX, "MS:1002976", "ALEX", "Analysis of lipid experiments, a calculator for m/z values of intact lipid molecules (MS1).", false},

+    {MS_ALEX123, "MS:1002977", "ALEX123", "Analysis of lipid experiments 123, a calculator with m/z values of intact lipid molecules (MS1) and their fragment ions at the MS2 and MS3 level.", false},

+    {MS_LIMSA, "MS:1002978", "LIMSA", "Software tool for the quantitative analysis of mass spectrometric lipidome data.", false},

+    {MS_LOBSTAHS, "MS:1002979", "LOBSTAHS", "Adduct-Based lipidomics software for the discovery and identification of oxidative stress biomarkers.", false},

+    {MS_LipidQA, "MS:1002980", "LipidQA", "Lipid qualitative/quantitative analysis software for identification and quantitation of complex lipid molecular species.", false},

+    {MS_Proline, "MS:1002981", "Proline", "The Proline software suite for mass spectrometry based proteomics.", false},

+    {MS_PepNovo, "MS:1002982", "PepNovo", "PepNovo tool for de novo peptide sequencing.", false},

+    {MS_pNovo, "MS:1002983", "pNovo", "pNovo tool for de novo peptide sequencing and identification using HCD spectra.", false},

+    {MS_Novor, "MS:1002984", "Novor", "Novor real-time peptide de novo sequencing software tool.", false},

+    {MS_in_gel_digestion, "MS:1002985", "in-gel digestion", "Digestion of proteins separated by gel electrophoresis for mass spectrometric characterization of proteins and proteomes.", false},

+    {MS_in_solution_digestion, "MS:1002986", "in-solution digestion", "Digestion of proteins in solution for mass spectrometric characterization of proteins and proteomes.", false},

+    {MS_IdentiPy, "MS:1002987", "IdentiPy", "IdentiPy.", false},

+    {MS_IdentiPy_RHNS, "MS:1002988", "IdentiPy:RHNS", "The IdentiPy result 'RHNS'.", false},

+    {MS_IdentiPy_hyperscore, "MS:1002989", "IdentiPy:hyperscore", "The IdentiPy result 'hyperscore'.", false},

+    {MS_ms_deisotope, "MS:1002990", "ms_deisotope", "ms_deisotope, a library for deisotoping and charge state deconvolution of mass spectra.", false},

+    {MS_python_psims, "MS:1002991", "python-psims", "python-psims, a library for generating mzML and mzIdentML.", false},

+    {MS_Andromeda_PEP, "MS:1002995", "Andromeda:PEP", "Posterior error probability of the best identified peptide of the Andromeda search engine.", false},

+    {MS_Andromeda_apl_file_format, "MS:1002996", "Andromeda:apl file format", "Peak list file format of the Andromeda search engine.", false},

+    {MS_ProteomeXchange_dataset_identifier_reanalysis_number, "MS:1002997", "ProteomeXchange dataset identifier reanalysis number", "Index number of a reanalysis within a ProteomeXchange reprocessed dataset identifier container (RPXD).", false},

+    {MS_LCMS_9030, "MS:1002998", "LCMS-9030", "Shimadzu Scientific Instruments LCMS-9030 Q-TOF MS.", false},

+    {MS_LCMS_8060, "MS:1002999", "LCMS-8060", "Shimadzu Scientific Instruments LCMS-8060 MS.", false},

+    {MS_LCMS_8050, "MS:1003000", "LCMS-8050", "Shimadzu Scientific Instruments LCMS-8050 MS.", false},

+    {MS_LCMS_8045, "MS:1003001", "LCMS-8045", "Shimadzu Scientific Instruments LCMS-8045 MS.", false},

+    {MS_LCMS_8040, "MS:1003002", "LCMS-8040", "Shimadzu Scientific Instruments LCMS-8040 MS.", false},

+    {MS_LCMS_2020, "MS:1003003", "LCMS-2020", "Shimadzu Scientific Instruments LCMS-2020.", false},

+    {MS_maXis_II, "MS:1003004", "maXis II", "Bruker Daltonics' maXis II.", false},

+    {MS_timsTOF_Pro, "MS:1003005", "timsTOF Pro", "Bruker Daltonics' timsTOF Pro.", false},

+    {MS_mean_inverse_reduced_ion_mobility_array, "MS:1003006", "mean inverse reduced ion mobility array", "Array of inverse reduced ion mobilities, averaged from a matrix of binned m/z and ion mobility values, corresponding to a spectrum of individual peaks encoded with an m/z array.", false},

+    {MS_raw_ion_mobility_array, "MS:1003007", "raw ion mobility array", "Array of raw drift times.", false},

+    {MS_raw_inverse_reduced_ion_mobility_array, "MS:1003008", "raw inverse reduced ion mobility array", "Array of raw inverse reduced ion mobilities.", false},

+    {MS_Shimadzu_Biotech_LCD_format, "MS:1003009", "Shimadzu Biotech LCD format", "Shimadzu Biotech LCD file format.", false},

+    {MS_LPPtiger, "MS:1003010", "LPPtiger", "Software for lipidome-specific prediction and identification of oxidized phospholipids from LC-MS datasets.", false},

+    {MS_pFind, "MS:1003011", "pFind", "Sequence-tag-based search engine pFind.", false},

+    {MS_KSDP_score, "MS:1003012", "KSDP score", "Kernel mass spectral dot product scoring function.", false},

+    {MS_i3tms, "MS:1003013", "i3tms", "i3-tms search engine and data-analysis software.", false},

+    {MS_MSFragger, "MS:1003014", "MSFragger", "A database search-based peptide identification tool.", false},

+    {MS_razor_peptide, "MS:1003015", "razor peptide", "A peptide which is shared between protein groups and assigned to the protein group with the largest number of identified peptides.", false},

+    {MS_ProteinProphet_peptide_weight, "MS:1003016", "ProteinProphet:peptide weight", "Fraction of peptide evidence attributable to a protein or a set of indistinguishable proteins.", false},

+    {MS_ProteinProphet_peptide_group_weight, "MS:1003017", "ProteinProphet:peptide group weight", "Fraction of peptide evidence attributable to a group of proteins.", false},

+    {MS_Philosopher, "MS:1003018", "Philosopher", "General proteomics processing toolkit for shotgun proteomics.", false},

+    {MS_pressure_chromatogram, "MS:1003019", "pressure chromatogram", "Representation of chromatographic pressure versus time.", false},

+    {MS_flow_rate_chromatogram, "MS:1003020", "flow rate chromatogram", "Representation of the chromatographic flow rate versus time.", false},

+    {MS_Fixed_modification, "MS:1003021", "Fixed modification", "Post-translational modification which is assumed to be present at each instance of a residue type.", false},

+    {MS_Variable_modification, "MS:1003022", "Variable modification", "Post-translational modification which may or may not be present at a residue type.", false},

+    {MS_OpenPepXL, "MS:1003023", "OpenPepXL", "Cross-Linking MS search engine.", false},

+    {MS_OpenPepXL_score, "MS:1003024", "OpenPepXL:score", "The OpenPepXL score for a cross-link spectrum match.", false},

+    {MS_named_element, "MS:1003025", "named element", "A named element that is an attribute in a proteomics standards file.", false},

+    {MS_named_element_in_mzIdentML, "MS:1003026", "named element in mzIdentML", "A named element that is an attribute in a mzIdentML file.", false},

+    {MS_named_element_in_mzML, "MS:1003027", "named element in mzML", "A named element that is an attribute in a mzML file.", false},

+    {MS_Orbitrap_Exploris_480, "MS:1003028", "Orbitrap Exploris 480", "Thermo Scientific Orbitrap Exploris 480 Quadrupole Orbitrap MS.", false},

+    {MS_Orbitrap_Eclipse, "MS:1003029", "Orbitrap Eclipse", "Thermo Scientific Orbitrap Eclipse mass spectrometer with Tribrid architecture consisting of quadrupole mass filter, linear ion trap and Orbitrap mass analyzers.", false},

+    {MS_Mascot_MinNumSigUniqueSeqs, "MS:1003030", "Mascot:MinNumSigUniqueSeqs", "Minimum number of significant unique sequences required in a protein hit. The setting is only relevant if the protein grouping strategy is 'family clustering'.", false},

     {UNIMOD_unimod_root_node, "UNIMOD:0", "unimod root node", "The root node of the unimod modifications ontology.", false},

     {UNIMOD_Acetyl, "UNIMOD:1", "Acetyl", "Acetylation.", false},

     {UNIMOD_Amidated, "UNIMOD:2", "Amidated", "Amidation.", false},

@@ -2728,7 +3089,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Formyl, "UNIMOD:122", "Formyl", "Formylation.", false},

     {UNIMOD_ICAT_H, "UNIMOD:123", "ICAT-H", "N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.", false},

     {UNIMOD_ICAT_H_13C_6_, "UNIMOD:124", "ICAT-H:13C(6)", "N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.", false},

-    {UNIMOD_Thioacyl, "UNIMOD:126", "Thioacyl", "3-sulfanylpropanoyl.", false},

+    {UNIMOD_Xlink_DTSSP_88_, "UNIMOD:126", "Xlink:DTSSP[88]", "Cleaved and reduced DSP/DTSSP crosslinker.", false},

     {UNIMOD_Fluoro, "UNIMOD:127", "Fluoro", "Fluorination.", false},

     {UNIMOD_Fluorescein, "UNIMOD:128", "Fluorescein", "5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).", false},

     {UNIMOD_Iodo, "UNIMOD:129", "Iodo", "Iodination.", false},

@@ -2759,7 +3120,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Hex_2_HexNAc_2_Pent_1_, "UNIMOD:157", "Hex(2)HexNAc(2)Pent(1)", "Hex2HexNAc2Pent1.", false},

     {UNIMOD_Hex_2_HexNAc_2_dHex_1_, "UNIMOD:158", "Hex(2)HexNAc(2)dHex(1)", "Hex2HexNAc2dHex1.", false},

     {UNIMOD_Hex_3_HexNAc_2_, "UNIMOD:159", "Hex(3)HexNAc(2)", "Hex3HexNAc2.", false},

-    {UNIMOD_Hex_1_HexNAc_1_NeuAc_2_, "UNIMOD:160", "Hex(1)HexNAc(1)NeuAc(2)", "Hex1HexNAc1NeuAc2.", false},

+    {UNIMOD_Hex_1_HexNAc_1_NeuAc_2_, "UNIMOD:160", "Hex(1)HexNAc(1)NeuAc(2)", "Hex HexNAc NeuAc(2) ---OR--- Hex HexNAc(3) HexA.", false},

     {UNIMOD_Hex_3_HexNAc_2_Phos_1_, "UNIMOD:161", "Hex(3)HexNAc(2)Phos(1)", "Hex(3) HexNAc(2) Phos.", false},

     {UNIMOD_Delta_S__1_Se_1_, "UNIMOD:162", "Delta:S(-1)Se(1)", "Selenium replaces sulfur.", false},

     {UNIMOD_Delta_H_1_N__1_18O_1_, "UNIMOD:170", "Delta:H(1)N(-1)18O(1)", "Glycosylated asparagine 18O labeling.", false},

@@ -2806,8 +3167,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Cytopiloyne, "UNIMOD:270", "Cytopiloyne", "Nucleophilic addtion to cytopiloyne.", false},

     {UNIMOD_Cytopiloyne_water, "UNIMOD:271", "Cytopiloyne+water", "Nucleophilic addition to cytopiloyne+H2O.", false},

     {UNIMOD_CAF, "UNIMOD:272", "CAF", "Sulfonation of N-terminus.", false},

-    {UNIMOD_Xlink_SSD, "UNIMOD:273", "Xlink:SSD", "Covalent modification of lysine by cross-linking reagent.", false},

-    {UNIMOD_Nitrosyl, "UNIMOD:275", "Nitrosyl", "S-nitrosylation.", false},

+    {UNIMOD_Nitrosyl, "UNIMOD:275", "Nitrosyl", "Nitrosylation.", false},

     {UNIMOD_AEBS, "UNIMOD:276", "AEBS", "Aminoethylbenzenesulfonylation.", false},

     {UNIMOD_Ethanolyl, "UNIMOD:278", "Ethanolyl", "Ethanolation.", false},

     {UNIMOD_Ethyl, "UNIMOD:280", "Ethyl", "Ethylation.", false},

@@ -2819,7 +3179,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Biotin_PEO_Amine, "UNIMOD:289", "Biotin-PEO-Amine", "Biotin polyethyleneoxide amine.", false},

     {UNIMOD_Biotin_HPDP, "UNIMOD:290", "Biotin-HPDP", "Pierce EZ-Link Biotin-HPDP.", false},

     {UNIMOD_Delta_Hg_1_, "UNIMOD:291", "Delta:Hg(1)", "Mercury Mercaptan.", false},

-    {UNIMOD_IodoU_AMP, "UNIMOD:292", "IodoU-AMP", "Cross-link of (Iodo)-uracil MP with W,F,Y.", false},

+    {UNIMOD_IodoU_AMP, "UNIMOD:292", "IodoU-AMP", "(Iodo)-uracil MP.", false},

     {UNIMOD_CAMthiopropanoyl, "UNIMOD:293", "CAMthiopropanoyl", "3-(carbamidomethylthio)propanoyl.", false},

     {UNIMOD_IED_Biotin, "UNIMOD:294", "IED-Biotin", "Biotinoyl-iodoacetyl-ethylenediamine.", false},

     {UNIMOD_dHex, "UNIMOD:295", "dHex", "Fucose.", false},

@@ -2829,7 +3189,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Menadione, "UNIMOD:302", "Menadione", "Menadione quinone derivative.", false},

     {UNIMOD_DeStreak, "UNIMOD:303", "DeStreak", "Cysteine mercaptoethanol.", false},

     {UNIMOD_dHex_1_Hex_3_HexNAc_4_, "UNIMOD:305", "dHex(1)Hex(3)HexNAc(4)", "Fucosylated biantennary (-2 galactose).", false},

-    {UNIMOD_dHex_1_Hex_4_HexNAc_4_, "UNIMOD:307", "dHex(1)Hex(4)HexNAc(4)", "Fucosylated biantennary (-1 galactose).", false},

+    {UNIMOD_dHex_1_Hex_4_HexNAc_4_, "UNIMOD:307", "dHex(1)Hex(4)HexNAc(4)", "DHex Hex(4) HexNAc(4) ---OR--- Hex(4) HexNAc(4) Pent Me.", false},

     {UNIMOD_dHex_1_Hex_5_HexNAc_4_, "UNIMOD:308", "dHex(1)Hex(5)HexNAc(4)", "Fucosylated biantennary.", false},

     {UNIMOD_Hex_3_HexNAc_4_, "UNIMOD:309", "Hex(3)HexNAc(4)", "Biantennary (-2 galactose).", false},

     {UNIMOD_Hex_4_HexNAc_4_, "UNIMOD:310", "Hex(4)HexNAc(4)", "Biantennary (-1 galactose).", false},

@@ -2841,8 +3201,8 @@ const TermInfo termInfos_[] =

     {UNIMOD_Delta_H_2_C_5_, "UNIMOD:318", "Delta:H(2)C(5)", "MDA adduct +62.", false},

     {UNIMOD_Delta_H_2_C_3_O_1_, "UNIMOD:319", "Delta:H(2)C(3)O(1)", "MDA adduct +54.", false},

     {UNIMOD_Nethylmaleimide_water, "UNIMOD:320", "Nethylmaleimide+water", "Nethylmaleimidehydrolysis.", false},

-    {UNIMOD_Xlink_B10621, "UNIMOD:323", "Xlink:B10621", "Bis-N-I-sulfonerahodamine.", false},

-    {UNIMOD_DTBP, "UNIMOD:324", "DTBP", "Dimethyl 3,3\\'-dithiobispropionimidate.", false},

+    {UNIMOD_Xlink_B10621, "UNIMOD:323", "Xlink:B10621", "Bis-((N-iodoacetyl)piperazinyl)sulfonerhodamine.", false},

+    {UNIMOD_Xlink_DTBP_87_, "UNIMOD:324", "Xlink:DTBP[87]", "Cleaved and reduced DTBP crosslinker.", false},

     {UNIMOD_FP_Biotin, "UNIMOD:325", "FP-Biotin", "10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.", false},

     {UNIMOD_Delta_H_4_C_2_O__1_S_1_, "UNIMOD:327", "Delta:H(4)C(2)O(-1)S(1)", "S-Ethylcystine from Serine.", false},

     {UNIMOD_Methyl_2H_3_13C_1_, "UNIMOD:329", "Methyl:2H(3)13C(1)", "Monomethylation.", false},

@@ -2946,8 +3306,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_GluGluGlu, "UNIMOD:452", "GluGluGlu", "Triglutamyl.", false},

     {UNIMOD_GluGluGluGlu, "UNIMOD:453", "GluGluGluGlu", "Tetraglutamyl.", false},

     {UNIMOD_HexN, "UNIMOD:454", "HexN", "Hexosamine.", false},

-    {UNIMOD_Xlink_DMP_s, "UNIMOD:455", "Xlink:DMP-s", "One end of crosslink attached, one end free.", false},

-    {UNIMOD_Xlink_DMP, "UNIMOD:456", "Xlink:DMP", "Both ends of crosslink attached to same peptide.", false},

+    {UNIMOD_Xlink_DMP_154_, "UNIMOD:455", "Xlink:DMP[154]", "Free monolink of DMP crosslinker.", false},

     {UNIMOD_NDA, "UNIMOD:457", "NDA", "Naphthalene-2,3-dicarboxaldehyde.", false},

     {UNIMOD_SPITC_13C_6_, "UNIMOD:464", "SPITC:13C(6)", "4-sulfophenyl isothiocyanate (Heavy C13).", false},

     {UNIMOD_AEC_MAEC, "UNIMOD:472", "AEC-MAEC", "Aminoethylcysteine.", false},

@@ -3148,8 +3507,8 @@ const TermInfo termInfos_[] =

     {UNIMOD_iTRAQ8plex, "UNIMOD:730", "iTRAQ8plex", "Representative mass and accurate mass for 113, 114, 116 & 117.", false},

     {UNIMOD_iTRAQ8plex_13C_6_15N_2_, "UNIMOD:731", "iTRAQ8plex:13C(6)15N(2)", "Accurate mass for 115, 118, 119 & 121.", false},

     {UNIMOD_Ethanolamine, "UNIMOD:734", "Ethanolamine", "Carboxyl modification with ethanolamine.", false},

-    {UNIMOD_DTT_ST, "UNIMOD:735", "DTT_ST", "Dithiothreitol (DTT).", false},

-    {UNIMOD_DTT_C, "UNIMOD:736", "DTT_C", "Dithiothreitol (DTT) on Cys.", false},

+    {UNIMOD_BEMAD_ST, "UNIMOD:735", "BEMAD_ST", "Beta elimination of modified S or T followed by Michael addition of DTT.", false},

+    {UNIMOD_BEMAD_C, "UNIMOD:736", "BEMAD_C", "Beta elimination of alkylated Cys followed by Michael addition of DTT.", false},

     {UNIMOD_TMT6plex, "UNIMOD:737", "TMT6plex", "Sixplex Tandem Mass Tag®.", false},

     {UNIMOD_TMT2plex, "UNIMOD:738", "TMT2plex", "Duplex Tandem Mass Tag®.", false},

     {UNIMOD_TMT, "UNIMOD:739", "TMT", "Native Tandem Mass Tag®.", false},

@@ -3159,13 +3518,13 @@ const TermInfo termInfos_[] =

     {UNIMOD_NO_SMX_SEMD, "UNIMOD:744", "NO_SMX_SEMD", "Nitroso Sulfamethoxazole Sulphenamide thiol adduct.", false},

     {UNIMOD_NO_SMX_SMCT, "UNIMOD:745", "NO_SMX_SMCT", "Nitroso Sulfamethoxazole semimercaptal thiol adduct.", false},

     {UNIMOD_NO_SMX_SIMD, "UNIMOD:746", "NO_SMX_SIMD", "Nitroso Sulfamethoxazole Sulfinamide thiol adduct.", false},

-    {UNIMOD_Malonyl, "UNIMOD:747", "Malonyl", "Malonylation of C and S residues.", false},

+    {UNIMOD_Malonyl, "UNIMOD:747", "Malonyl", "Malonylation.", false},

     {UNIMOD_3sulfo, "UNIMOD:748", "3sulfo", "Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.", false},

     {UNIMOD_trifluoro, "UNIMOD:750", "trifluoro", "Trifluoroleucine replacement of leucine.", false},

     {UNIMOD_TNBS, "UNIMOD:751", "TNBS", "Tri nitro benzene.", false},

     {UNIMOD_IDEnT, "UNIMOD:762", "IDEnT", "Isotope Distribution Encoded Tag.", false},

-    {UNIMOD_DTT_ST_2H_6_, "UNIMOD:763", "DTT_ST:2H(6)", "Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines.", false},

-    {UNIMOD_DTT_C_2H_6_, "UNIMOD:764", "DTT_C:2H(6)", "Isotopically labeled Dithiothreitol (DTT) modification of cysteines.", false},

+    {UNIMOD_BEMAD_ST_2H_6_, "UNIMOD:763", "BEMAD_ST:2H(6)", "Beta elimination of modified S or T followed by Michael addition of labelled DTT.", false},

+    {UNIMOD_BEMAD_C_2H_6_, "UNIMOD:764", "BEMAD_C:2H(6)", "Beta elimination of alkylated Cys followed by Michael addition of labelled DTT.", false},

     {UNIMOD_Met_loss, "UNIMOD:765", "Met-loss", "Removal of initiator methionine from protein N-terminus.", false},

     {UNIMOD_Met_loss_Acetyl, "UNIMOD:766", "Met-loss+Acetyl", "Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus.", false},

     {UNIMOD_Menadione_HQ, "UNIMOD:767", "Menadione-HQ", "Menadione hydroquinone derivative.", false},

@@ -3184,8 +3543,8 @@ const TermInfo termInfos_[] =

     {UNIMOD_Biotin_Thermo_21360, "UNIMOD:811", "Biotin:Thermo-21360", "Was Biotin-PEO4-hydrazide.", false},

     {UNIMOD_Cy3b_maleimide, "UNIMOD:821", "Cy3b-maleimide", "Fluorescent dye that labels cysteines.", false},

     {UNIMOD_Gly_loss_Amide, "UNIMOD:822", "Gly-loss+Amide", "Enzymatic glycine removal leaving an amidated C-terminus.", false},

-    {UNIMOD_BMOE, "UNIMOD:824", "BMOE", "Addition of BMOE crosslinker.", false},

-    {UNIMOD_DFDNB, "UNIMOD:825", "DFDNB", "Addition of DFDNB crosslinker.", false},

+    {UNIMOD_Xlink_BMOE, "UNIMOD:824", "Xlink:BMOE", "Intact or monolink BMOE crosslinker.", false},

+    {UNIMOD_Xlink_DFDNB, "UNIMOD:825", "Xlink:DFDNB", "Intact DFDNB crosslinker.", false},

     {UNIMOD_TMPP_Ac, "UNIMOD:827", "TMPP-Ac", "Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.", false},

     {UNIMOD_Dihydroxyimidazolidine, "UNIMOD:830", "Dihydroxyimidazolidine", "Dihydroxy methylglyoxal adduct.", false},

     {UNIMOD_Label_2H_4__Acetyl, "UNIMOD:834", "Label:2H(4)+Acetyl", "Acetyl 4,4,5,5-D4 Lysine.", false},

@@ -3228,7 +3587,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Leu__MetOx, "UNIMOD:905", "Leu->MetOx", "Leu->Met substitution and sulfoxidation.", false},

     {UNIMOD_Lys__MetOx, "UNIMOD:906", "Lys->MetOx", "Lys->Met substitution and sulfoxidation.", false},

     {UNIMOD_Galactosyl, "UNIMOD:907", "Galactosyl", "Gluconoylation.", false},

-    {UNIMOD_SMCC_maleimide, "UNIMOD:908", "SMCC-maleimide", "Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.", false},

+    {UNIMOD_Xlink_SMCC_321_, "UNIMOD:908", "Xlink:SMCC[321]", "Monolink of SMCC terminated with 3-(dimethylamino)-1-propylamine.", false},

     {UNIMOD_Bacillosamine, "UNIMOD:910", "Bacillosamine", "2,4-diacetamido-2,4,6-trideoxyglucopyranose.", false},

     {UNIMOD_MTSL, "UNIMOD:911", "MTSL", "Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).", false},

     {UNIMOD_HNE_BAHAH, "UNIMOD:912", "HNE-BAHAH", "4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.", false},

@@ -3249,7 +3608,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Cys__ethylaminoAla, "UNIMOD:940", "Cys->ethylaminoAla", "Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine.", false},

     {UNIMOD_DNPS, "UNIMOD:941", "DNPS", "2,4-Dinitrobenzenesulfenyl.", false},

     {UNIMOD_SulfoGMBS, "UNIMOD:942", "SulfoGMBS", "High molecular absorption label for proteins.", false},

-    {UNIMOD_DimethylamineGMBS, "UNIMOD:943", "DimethylamineGMBS", "Modified GMBS X linker for proteins.", false},

+    {UNIMOD_DimethylamineGMBS, "UNIMOD:943", "DimethylamineGMBS", "Modified GMBS X linker.", false},

     {UNIMOD_Label_15N_2_2H_9_, "UNIMOD:944", "Label:15N(2)2H(9)", "SILAC label.", false},

     {UNIMOD_LG_anhydrolactam, "UNIMOD:946", "LG-anhydrolactam", "Levuglandinyl-lysine anhydrolactam adduct.", false},

     {UNIMOD_LG_pyrrole, "UNIMOD:947", "LG-pyrrole", "Levuglandinyl-lysine pyrrole adduct.", false},

@@ -3271,7 +3630,6 @@ const TermInfo termInfos_[] =

     {UNIMOD_maleimide3, "UNIMOD:971", "maleimide3", "Maleimide-3-saccharide.", false},

     {UNIMOD_maleimide5, "UNIMOD:972", "maleimide5", "Maleimide-5-saccharide.", false},

     {UNIMOD_Puromycin, "UNIMOD:973", "Puromycin", "Puromycin.", false},

-    {UNIMOD_Chlorpyrifos, "UNIMOD:975", "Chlorpyrifos", "O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.", false},

     {UNIMOD_Carbofuran, "UNIMOD:977", "Carbofuran", "2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.", false},

     {UNIMOD_BITC, "UNIMOD:978", "BITC", "Benzyl isothiocyanate.", false},

     {UNIMOD_PEITC, "UNIMOD:979", "PEITC", "Phenethyl isothiocyanate.", false},

@@ -3296,7 +3654,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_, "UNIMOD:1006", "Label:13C(6)15N(4)+Methyl:2H(3)13C(1)", "2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).", false},

     {UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_, "UNIMOD:1007", "Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2)", "2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).", false},

     {UNIMOD_Cys__CamSec, "UNIMOD:1008", "Cys->CamSec", "Sec Iodoacetamide derivative.", false},

-    {UNIMOD_Thiazolidine, "UNIMOD:1009", "Thiazolidine", "Addition of Carbon to cysteine.", false},

+    {UNIMOD_Thiazolidine, "UNIMOD:1009", "Thiazolidine", "Formaldehyde adduct.", false},

     {UNIMOD_DEDGFLYMVYASQETFG, "UNIMOD:1010", "DEDGFLYMVYASQETFG", "Addition of DEDGFLYMVYASQETFG.", false},

     {UNIMOD_Biotin_Invitrogen_M1602, "UNIMOD:1012", "Biotin:Invitrogen-M1602", "Nalpha-(3-maleimidylpropionyl)biocytin.", false},

     {UNIMOD_glycidamide, "UNIMOD:1014", "glycidamide", "Glycidamide adduct.", false},

@@ -3304,13 +3662,13 @@ const TermInfo termInfos_[] =

     {UNIMOD_DMPO, "UNIMOD:1017", "DMPO", "DMPO spin-trap nitrone adduct.", false},

     {UNIMOD_ICDID, "UNIMOD:1018", "ICDID", "Isotope-Coded Dimedone light form.", false},

     {UNIMOD_ICDID_2H_6_, "UNIMOD:1019", "ICDID:2H(6)", "Isotope-Coded Dimedone heavy form.", false},

-    {UNIMOD_Xlink_DSS, "UNIMOD:1020", "Xlink:DSS", "Water-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus.", false},

-    {UNIMOD_Xlink_EGS, "UNIMOD:1021", "Xlink:EGS", "Monolink of EGS crosslinker to Lys or N-terminus.", false},

-    {UNIMOD_Xlink_DST, "UNIMOD:1022", "Xlink:DST", "Monolink of DST crosslinker to Lys or N-terminus.", false},

-    {UNIMOD_Xlink_DTSSP, "UNIMOD:1023", "Xlink:DTSSP", "Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.", false},

-    {UNIMOD_Xlink_SMCC, "UNIMOD:1024", "Xlink:SMCC", "Monolink of sulfoSMCC/SMCC crosslinker to Cys.", false},

-    {UNIMOD_Xlink_DMP_de, "UNIMOD:1027", "Xlink:DMP-de", "Monolink of DMP crosslinker to Lys or N-terminus.", false},

-    {UNIMOD_Xlink_EGScleaved, "UNIMOD:1028", "Xlink:EGScleaved", "EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.", false},

+    {UNIMOD_Xlink_DSS_156_, "UNIMOD:1020", "Xlink:DSS[156]", "Water-quenched monolink of DSS/BS3 crosslinker.", false},

+    {UNIMOD_Xlink_EGS_244_, "UNIMOD:1021", "Xlink:EGS[244]", "Water quenched monolink of EGS cross-linker.", false},

+    {UNIMOD_Xlink_DST_132_, "UNIMOD:1022", "Xlink:DST[132]", "Water quenched monolink of DST crosslinker.", false},

+    {UNIMOD_Xlink_DTSSP_192_, "UNIMOD:1023", "Xlink:DTSSP[192]", "Water quenched monolink of DSP/DTSSP crosslinker.", false},

+    {UNIMOD_Xlink_SMCC_237_, "UNIMOD:1024", "Xlink:SMCC[237]", "Water quenched monolink of SMCC.", false},

+    {UNIMOD_Xlink_DMP_140_, "UNIMOD:1027", "Xlink:DMP[140]", "Water quenched monolink of DMP crosslinker.", false},

+    {UNIMOD_Xlink_EGS_115_, "UNIMOD:1028", "Xlink:EGS[115]", "Cleavage product of EGS protein crosslinks by hydroylamine treatment.", false},

     {UNIMOD_Biotin_Thermo_88310, "UNIMOD:1031", "Biotin:Thermo-88310", "Desthiobiotin modification of lysine.", false},

     {UNIMOD_2_nitrobenzyl, "UNIMOD:1032", "2-nitrobenzyl", "Tyrosine caged with 2-nitrobenzyl (ONB).", false},

     {UNIMOD_Cys__SecNEM, "UNIMOD:1033", "Cys->SecNEM", "N-ethylmaleimide on selenocysteines.", false},

@@ -3653,7 +4011,7 @@ const TermInfo termInfos_[] =

     {UNIMOD_Hex_1_Pent_2_, "UNIMOD:1428", "Hex(1)Pent(2)", "Hex Pent(2).", false},

     {UNIMOD_Hex_1_HexNAc_1_Phos_1_, "UNIMOD:1429", "Hex(1)HexNAc(1)Phos(1)", "Hex HexNAc Phos.", false},

     {UNIMOD_Hex_1_HexNAc_1_Sulf_1_, "UNIMOD:1430", "Hex(1)HexNAc(1)Sulf(1)", "Hex HexNAc Sulf.", false},

-    {UNIMOD_Hex_1_NeuAc_1_, "UNIMOD:1431", "Hex(1)NeuAc(1)", "Hex NeuAc.", false},

+    {UNIMOD_Hex_1_NeuAc_1_, "UNIMOD:1431", "Hex(1)NeuAc(1)", "Hex NeuAc ---OR--- HexNAc Kdn.", false},

     {UNIMOD_Hex_1_NeuGc_1_, "UNIMOD:1432", "Hex(1)NeuGc(1)", "Hex NeuGc.", false},

     {UNIMOD_HexNAc_3_, "UNIMOD:1433", "HexNAc(3)", "HexNAc(3).", false},

     {UNIMOD_HexNAc_1_NeuAc_1_, "UNIMOD:1434", "HexNAc(1)NeuAc(1)", "HexNAc NeuAc.", false},

@@ -3663,16 +4021,16 @@ const TermInfo termInfos_[] =

     {UNIMOD_Hex_2_HexNAc_1_, "UNIMOD:1438", "Hex(2)HexNAc(1)", "Hex(2) HexNAc.", false},

     {UNIMOD_Hex_1_HexA_1_HexNAc_1_, "UNIMOD:1439", "Hex(1)HexA(1)HexNAc(1)", "Hex HexA HexNAc.", false},

     {UNIMOD_Hex_2_HexNAc_1_Me_1_, "UNIMOD:1440", "Hex(2)HexNAc(1)Me(1)", "Hex(2) HexNAc Me.", false},

-    {UNIMOD_Hex_3_Phos_1_, "UNIMOD:1441", "Hex(3)Phos(1)", "Hex(3) Phos.", false},

+    {UNIMOD_Hex_1_Pent_3_, "UNIMOD:1441", "Hex(1)Pent(3)", "Hex Pent(3).", false},

     {UNIMOD_Hex_1_NeuAc_1_Pent_1_, "UNIMOD:1442", "Hex(1)NeuAc(1)Pent(1)", "Hex NeuAc Pent.", false},