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delete old changelog

Laurent Gatto authored on 09/09/2020 16:06:21
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-2014-07-12 Qiang Kou  <qkou@umail.iu.edu>
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-
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-	mzid file reading
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-
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-2014-05-19 Qiang Kou  <qkou@umail.iu.edu>
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-
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-	Backend pwiz implemented
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-
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-2012-08-20  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* src/boost/thread/xtime.hpp: applied another patch by Alvaro Cuadros Inostroza
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-	for gcc-4.7.1 compatibility in boost, see e.g. https://bbs.archlinux.org/viewtopic.php?pid=1126282
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-	and https://svn.boost.org/trac/boost/ticket/6940
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-
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-2012-05-15  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* libstdcpp3.hpp: applied patch by Alvaro Cuadros Inostroza
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-	for gcc-4.7 compatibility in boost
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-
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-2012-04-04  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* src/pwiz/data/msdata/RAMPAdapter.cpp (pwiz): Revert hack from 2012-03-26  
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-	* src/pwiz/data/msdata/MSData.hpp (pwiz): Add Patch suggested by Brian Pratt, 
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-	for a better fix of problem if first spectrum if it has an index==0
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-	
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-2012-04-04  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* src/ramp.h: enable new I/O on windows
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-
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-	2012-03-31  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* src/ramp.h: disable new I/O on windows, should compile, 
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-	but will fail unit test with *.gz file
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-
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-2012-03-26  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* Added unit tests for *.mzdata.gz
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-
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-2012-03-26  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* RAMPAdapter.cpp: fix reading the first spectrum 
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-	if it has an index==0
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-
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-2012-03-13  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* R/ramp.R, src/rampR.cpp: back-ported the old XCMS rampR
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-	interface, which is much faster than cramp
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-
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-2012-02-28  Steffen Neumann  <sneumann@ipb-halle.de>	
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-
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-	* src/RcppRamp.cpp: Change the (temporary) Vectors from STL
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-	to Rcpp::*Vector for reduced memory footprint
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-	
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-2011-12-14  Steffen Neumann  <sneumann@ipb-halle.de>
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-
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-	* Updated to pwiz r3148
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-
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-2011-11-24  Steffen Neumann  <sneumann@ipb-halle.de>
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-	* Fixed linking of NetCDF with previous help from 
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-	  Dan Tenenbaum and Martin Morgan.
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-	
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-2011-09-16 Laurent Gatto <lg390@cam.ac.uk>
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-	* Changed é to \'e in mzR.bib.
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-
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-2011-09-07 Laurent Gatto <lg390@cam.ac.uk>
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-	* temporary fixed the 'could not find function "getClass"' warning 
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-	  adding require("methods", ... ) to .onLoad 
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-	  (see http://comments.gmane.org/gmane.comp.lang.r.rcpp/2140)
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-	  but this produces a note about 'Package startup functions should 
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-	  not change the search path.' But adding methods to the depends 
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-  	  fiels, as advertised in .onAttach, does not fix the original 
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-	  warning.
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-	* Bump version number to 0.99.2 to track changes.
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-
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-2011-08-10  Steffen Neumann  <sneumann@ipb-halle.de>
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-	* Temporary Fix for "unable to find ... for function "peaks"
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-	  by explicitely specifying mzR:: namespace
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-	* Bump version for resubmission to BioC
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-	
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-2011-08-09  Steffen Neumann  <sneumann@ipb-halle.de>
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-	* Minor fixes in documentation
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-	* Bump version for resubmission to BioC
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-
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-2011-08-01  Steffen Neumann  <sneumann@ipb-halle.de>
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-	* Added header(), peaks(), length()
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-	and show() for netCDF. This passes all unit tests 
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-	for a modified version of xcms, closing Issue #15
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-
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-2011-07-22  Steffen Neumann  <sneumann@ipb-halle.de>
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-	* Non-functional support for CDF
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-
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-2011-07-11 Laurent Gatto <lg390@cam.ac.uk>
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-	* simplified show method
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-	* rewrote runInfo in R
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-	* Misc changes in doc and vignette
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-	* bumped version to 0.5.5
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-	
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-2011-07-08 Steffen Neumann <sneumann@ipb-halle.de>
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-	* fixed Windows, checked for x64
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-	* bumped version to 0.5.4
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-	
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-2011-07-05 Laurent Gatto <lg390@cam.ac.uk>
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-	* small doc and vignette updates
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-	* peaks("mzRramp","missing") always returns a list 
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-	(possibly of length 1) of matrices.
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-	* bumped version to 0.5.2
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-	
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-2011-06-16  Laurent Gatto  <lg390@cam.ac.uk>
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-	* updated header("mzRamp","numeric") when 
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-	length(numeric) > 1 to return 'flat' data.frame
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-	* bumped verison to 0.5.1
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-	
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-2011-06-10  Laurent Gatto  <lg390@cam.ac.uk>
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-	* bumped version to 0.5.0
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-	* implementing backend design and related changes
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-	
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-2011-06-09  Laurent Gatto  <lg390@cam.ac.uk>
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-	* bumped version to 0.4.4
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-	* created format specific classes and methods
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-	* added (optional) format argument to openMSfile
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-	* updated documentation
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-	
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-2011-06-01  Laurent Gatto <lg390@cam.ac.uk>
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-	* added fileName slot to mzR class (now version 0.1.3)
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-	* updated openMSfile, fileName and mzR validity to 
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-	reflect new mzR@fileName slot.
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-	* update get3Dmap and initializeRamp generics - added 
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-	explicit non-dispatching elements.
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-	* added mzR.bib bibtex and Makefile files
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-	* updated docs and vignette
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-
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-2011-06-01  Steffen Neumann <sneumann@ipb-halle.de>
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-	* fix call to fileName() in instrumentInfo()
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-	* added Makefile for a simple "make" in unitTests
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-	* added man pages
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-	
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-2011-05-31  Laurent Gatto <lg390@cam.ac.uk>
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-	* file extension is checked to avoid retrieving 
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-	instrument info for mzdata files (see 
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-	https://github.com/sneumann/mzR/issues/5)
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-	* update Rcpp version dependency
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-	* updated unit test
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-	
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-2011-05-27  Laurent Gatto  <lg390@cam.ac.uk>
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-	* bumped verssion to 0.4.3
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-	* added further refinements and dummy documenation
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-	* builds, checks and installs fine 
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-
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-2011-05-25  Laurent Gatto  <lg390@cam.ac.uk>
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-	* bumped verion to 0.4.1
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-	* cleaned up code and file names, to fit with 
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-	Bioconductor's naming schemes.
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-	* created S4 classes and methods 
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-	
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-2011-05-01  Laurent Gatto  <lg390@cam.ac.uk>
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-	* added cleanup script to version 0.4
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-2010-12-16  Steffen Neumann  <sneumann@ipb-halle.de>
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-	* push 0.3 which adds mzML support, and has (a few) 
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-	unit tests. R CMD check finishes mostly clean, with 
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-	some problems with Rcpp/methods
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-