deleted file mode 100644

@@ -1,163 +0,0 @@

-2014-07-12 Qiang Kou  <qkou@umail.iu.edu>

-

-	mzid file reading

-

-2014-05-19 Qiang Kou  <qkou@umail.iu.edu>

-

-	Backend pwiz implemented

-

-2012-08-20  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* src/boost/thread/xtime.hpp: applied another patch by Alvaro Cuadros Inostroza

-	for gcc-4.7.1 compatibility in boost, see e.g. https://bbs.archlinux.org/viewtopic.php?pid=1126282

-	and https://svn.boost.org/trac/boost/ticket/6940

-

-2012-05-15  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* libstdcpp3.hpp: applied patch by Alvaro Cuadros Inostroza

-	for gcc-4.7 compatibility in boost

-

-2012-04-04  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* src/pwiz/data/msdata/RAMPAdapter.cpp (pwiz): Revert hack from 2012-03-26  

-	* src/pwiz/data/msdata/MSData.hpp (pwiz): Add Patch suggested by Brian Pratt, 

-	for a better fix of problem if first spectrum if it has an index==0

-	

-2012-04-04  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* src/ramp.h: enable new I/O on windows

-

-	2012-03-31  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* src/ramp.h: disable new I/O on windows, should compile, 

-	but will fail unit test with *.gz file

-

-2012-03-26  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* Added unit tests for *.mzdata.gz

-

-2012-03-26  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* RAMPAdapter.cpp: fix reading the first spectrum 

-	if it has an index==0

-

-2012-03-13  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* R/ramp.R, src/rampR.cpp: back-ported the old XCMS rampR

-	interface, which is much faster than cramp

-

-2012-02-28  Steffen Neumann  <sneumann@ipb-halle.de>	

-

-	* src/RcppRamp.cpp: Change the (temporary) Vectors from STL

-	to Rcpp::*Vector for reduced memory footprint

-	

-2011-12-14  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* Updated to pwiz r3148

-

-2011-11-24  Steffen Neumann  <sneumann@ipb-halle.de>

-	* Fixed linking of NetCDF with previous help from 

-	  Dan Tenenbaum and Martin Morgan.

-	

-2011-09-16 Laurent Gatto <lg390@cam.ac.uk>

-	* Changed é to \'e in mzR.bib.

-

-2011-09-07 Laurent Gatto <lg390@cam.ac.uk>

-	* temporary fixed the 'could not find function "getClass"' warning 

-	  adding require("methods", ... ) to .onLoad 

-	  (see http://comments.gmane.org/gmane.comp.lang.r.rcpp/2140)

-	  but this produces a note about 'Package startup functions should 

-	  not change the search path.' But adding methods to the depends 

-  	  fiels, as advertised in .onAttach, does not fix the original 

-	  warning.

-	* Bump version number to 0.99.2 to track changes.

-

-2011-08-10  Steffen Neumann  <sneumann@ipb-halle.de>

-	* Temporary Fix for "unable to find ... for function "peaks"

-	  by explicitely specifying mzR:: namespace

-	* Bump version for resubmission to BioC

-	

-2011-08-09  Steffen Neumann  <sneumann@ipb-halle.de>

-	* Minor fixes in documentation

-	* Bump version for resubmission to BioC

-

-2011-08-01  Steffen Neumann  <sneumann@ipb-halle.de>

-	* Added header(), peaks(), length()

-	and show() for netCDF. This passes all unit tests 

-	for a modified version of xcms, closing Issue #15

-

-2011-07-22  Steffen Neumann  <sneumann@ipb-halle.de>

-	* Non-functional support for CDF

-

-2011-07-11 Laurent Gatto <lg390@cam.ac.uk>

-	* simplified show method

-	* rewrote runInfo in R

-	* Misc changes in doc and vignette

-	* bumped version to 0.5.5

-	

-2011-07-08 Steffen Neumann <sneumann@ipb-halle.de>

-	* fixed Windows, checked for x64

-	* bumped version to 0.5.4

-	

-2011-07-05 Laurent Gatto <lg390@cam.ac.uk>

-	* small doc and vignette updates

-	* peaks("mzRramp","missing") always returns a list 

-	(possibly of length 1) of matrices.

-	* bumped version to 0.5.2

-	

-2011-06-16  Laurent Gatto  <lg390@cam.ac.uk>

-	* updated header("mzRamp","numeric") when 

-	length(numeric) > 1 to return 'flat' data.frame

-	* bumped verison to 0.5.1

-	

-2011-06-10  Laurent Gatto  <lg390@cam.ac.uk>

-	* bumped version to 0.5.0

-	* implementing backend design and related changes

-	

-2011-06-09  Laurent Gatto  <lg390@cam.ac.uk>

-	* bumped version to 0.4.4

-	* created format specific classes and methods

-	* added (optional) format argument to openMSfile

-	* updated documentation

-	

-2011-06-01  Laurent Gatto <lg390@cam.ac.uk>

-	* added fileName slot to mzR class (now version 0.1.3)

-	* updated openMSfile, fileName and mzR validity to 

-	reflect new mzR@fileName slot.

-	* update get3Dmap and initializeRamp generics - added 

-	explicit non-dispatching elements.

-	* added mzR.bib bibtex and Makefile files

-	* updated docs and vignette

-

-2011-06-01  Steffen Neumann <sneumann@ipb-halle.de>

-	* fix call to fileName() in instrumentInfo()

-	* added Makefile for a simple "make" in unitTests

-	* added man pages

-	

-2011-05-31  Laurent Gatto <lg390@cam.ac.uk>

-	* file extension is checked to avoid retrieving 

-	instrument info for mzdata files (see 

-	https://github.com/sneumann/mzR/issues/5)

-	* update Rcpp version dependency

-	* updated unit test

-	

-2011-05-27  Laurent Gatto  <lg390@cam.ac.uk>

-	* bumped verssion to 0.4.3

-	* added further refinements and dummy documenation

-	* builds, checks and installs fine 

-

-2011-05-25  Laurent Gatto  <lg390@cam.ac.uk>

-	* bumped verion to 0.4.1

-	* cleaned up code and file names, to fit with 

-	Bioconductor's naming schemes.

-	* created S4 classes and methods 

-	

-2011-05-01  Laurent Gatto  <lg390@cam.ac.uk>

-	* added cleanup script to version 0.4

-

-2010-12-16  Steffen Neumann  <sneumann@ipb-halle.de>

-

-	* push 0.3 which adds mzML support, and has (a few) 

-	unit tests. R CMD check finishes mostly clean, with 

-	some problems with Rcpp/methods

-