Package: mzR Type: Package Title: parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data) Version: 2.29.3 Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer Authors@R: c( person("Steffen", "Neumann", email="sneumann@ipb-halle.de", role=c("aut","cre")), person("Laurent", "Gatto", email="laurent.gatto@uclouvain.be", role=c("aut")), person("Qiakng", "Kou", email="qkou@umail.iu.edu", role=c("aut")), person("David","Rauh",email="drauh@ipb-halle.de", role=c("ctb")) ) Description: mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML and mzIdentML. The netCDF reading code has previously been used in XCMS. License: Artistic-2.0 LazyLoad: yes Depends: Rcpp (>= 0.10.1), methods, utils Imports: Biobase, BiocGenerics (>= 0.13.6), ProtGenerics (>= 1.17.3), ncdf4 Suggests: msdata (>= 0.15.1), RUnit, mzID, BiocStyle (>= 2.5.19), knitr, XML, rmarkdown VignetteBuilder: knitr LinkingTo: Rcpp, Rhdf5lib (>= 1.1.4) RcppModules: Pwiz, Ident SystemRequirements: C++11, GNU make URL: https://github.com/sneumann/mzR/ BugReports: https://github.com/sneumann/mzR/issues/ biocViews: ImmunoOncology, Infrastructure, DataImport, Proteomics, Metabolomics, MassSpectrometry RoxygenNote: 6.0.1