test_header_all <- function() { ## Check that the header call returns the same columns irrespectively of the ## backend. Issue #238 file <- system.file('cdf/ko15.CDF', package = "msdata") cdf <- openMSfile(file, backend="netCDF") header_cdf <- header(cdf) close(cdf) file <- system.file("threonine", "threonine_i2_e35_pH_tree.mzXML", package = "msdata") mzxml <- openMSfile(file, backend="pwiz") header_pwiz <- header(mzxml) close(mzxml) checkEquals(colnames(header_cdf), colnames(header_pwiz)) }