Package: mzR
Type: Package
Title: parser for netCDF, mzXML, mzData and mzML and mzIdentML files
       (mass spectrometry data)
Version: 2.29.3
Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer
Authors@R: c(
    person("Steffen", "Neumann", email="sneumann@ipb-halle.de", role=c("aut","cre")),
    person("Laurent", "Gatto", email="laurent.gatto@uclouvain.be", role=c("aut")),
    person("Qiakng", "Kou", email="qkou@umail.iu.edu", role=c("aut")),
    person("David","Rauh",email="drauh@ipb-halle.de", role=c("ctb"))
    )
Description: mzR provides a unified API to the common file formats and
        parsers available for mass spectrometry data. It comes with a
        wrapper for the ISB random access parser for mass spectrometry
        mzXML, mzData and mzML files. The package contains the
        original code written by the ISB, and a subset of the
        proteowizard library for mzML and mzIdentML. The netCDF
        reading code has previously been used in XCMS.
License: Artistic-2.0
LazyLoad: yes
Depends:
    R (>= 4.0.0),
    Rcpp (>= 0.10.1),
    methods,
    utils
Imports:
    Biobase,
    BiocGenerics (>= 0.13.6),
    ProtGenerics (>= 1.17.3),
    ncdf4
Suggests:
    msdata (>= 0.15.1),
    RUnit,
    mzID,
    BiocStyle (>= 2.5.19),
    knitr,
    XML,
    rmarkdown
VignetteBuilder: knitr
LinkingTo:
    Rcpp,
    Rhdf5lib (>= 1.1.4)
RcppModules:
    Pwiz,
    Ident
SystemRequirements: C++11, GNU make
URL: https://github.com/sneumann/mzR/
BugReports: https://github.com/sneumann/mzR/issues/
biocViews: ImmunoOncology, Infrastructure, DataImport, Proteomics, Metabolomics,
        MassSpectrometry
RoxygenNote: 6.0.1