ChangeLog
7f5050ef
 2011-09-16 Laurent Gatto <lg390@cam.ac.uk>
 	* Changed é to \'e in mzR.bib.
59cc83e1
 2011-09-07 Laurent Gatto <lg390@cam.ac.uk>
 	* temporary fixed the 'could not find function "getClass"' warning 
 	  adding require("methods", ... ) to .onLoad 
 	  (see http://comments.gmane.org/gmane.comp.lang.r.rcpp/2140)
 	  but this produces a note about 'Package startup functions should 
 	  not change the search path.' But adding methods to the depends 
   	  fiels, as advertised in .onAttach, does not fix the original 
 	  warning.
 	* Bump version number to 0.99.2 to track changes.
 
60c84217
 2011-08-10  Steffen Neumann  <sneumann@ipb-halle.de>
 	* Temporary Fix for "unable to find ... for function "peaks"
 	  by explicitely specifying mzR:: namespace
 	* Bump version for resubmission to BioC
 	
 2011-08-09  Steffen Neumann  <sneumann@ipb-halle.de>
 	* Minor fixes in documentation
 	* Bump version for resubmission to BioC
 
 2011-08-01  Steffen Neumann  <sneumann@ipb-halle.de>
 	* Added header(), peaks(), length()
 	and show() for netCDF. This passes all unit tests 
 	for a modified version of xcms, closing Issue #15
 
 2011-07-22  Steffen Neumann  <sneumann@ipb-halle.de>
 	* Non-functional support for CDF
 
 2011-07-11 Laurent Gatto <lg390@cam.ac.uk>
 	* simplified show method
 	* rewrote runInfo in R
 	* Misc changes in doc and vignette
 	* bumped version to 0.5.5
 	
 2011-07-08 Steffen Neumann <sneumann@ipb-halle.de>
 	* fixed Windows, checked for x64
 	* bumped version to 0.5.4
 	
 2011-07-05 Laurent Gatto <lg390@cam.ac.uk>
 	* small doc and vignette updates
 	* peaks("mzRramp","missing") always returns a list 
 	(possibly of length 1) of matrices.
 	* bumped version to 0.5.2
 	
 2011-06-16  Laurent Gatto  <lg390@cam.ac.uk>
 	* updated header("mzRamp","numeric") when 
 	length(numeric) > 1 to return 'flat' data.frame
 	* bumped verison to 0.5.1
 	
 2011-06-10  Laurent Gatto  <lg390@cam.ac.uk>
 	* bumped version to 0.5.0
 	* implementing backend design and related changes
 	
 2011-06-09  Laurent Gatto  <lg390@cam.ac.uk>
 	* bumped version to 0.4.4
 	* created format specific classes and methods
 	* added (optional) format argument to openMSfile
 	* updated documentation
 	
 2011-06-01  Laurent Gatto <lg390@cam.ac.uk>
 	* added fileName slot to mzR class (now version 0.1.3)
 	* updated openMSfile, fileName and mzR validity to 
 	reflect new mzR@fileName slot.
 	* update get3Dmap and initializeRamp generics - added 
 	explicit non-dispatching elements.
 	* added mzR.bib bibtex and Makefile files
 	* updated docs and vignette
 
 2011-06-01  Steffen Neumann <sneumann@ipb-halle.de>
 	* fix call to fileName() in instrumentInfo()
 	* added Makefile for a simple "make" in unitTests
 	* added man pages
 	
 2011-05-31  Laurent Gatto <lg390@cam.ac.uk>
 	* file extension is checked to avoid retrieving 
 	instrument info for mzdata files (see 
 	https://github.com/sneumann/mzR/issues/5)
 	* update Rcpp version dependency
 	* updated unit test
 	
 2011-05-27  Laurent Gatto  <lg390@cam.ac.uk>
 	* bumped verssion to 0.4.3
 	* added further refinements and dummy documenation
 	* builds, checks and installs fine 
 
 2011-05-25  Laurent Gatto  <lg390@cam.ac.uk>
 	* bumped verion to 0.4.1
 	* cleaned up code and file names, to fit with 
 	Bioconductor's naming schemes.
 	* created S4 classes and methods 
 	
 2011-05-01  Laurent Gatto  <lg390@cam.ac.uk>
 	* added cleanup script to version 0.4
 
 2010-12-16  Steffen Neumann  <sneumann@ipb-halle.de>
 
 	* push 0.3 which adds mzML support, and has (a few) 
 	unit tests. R CMD check finishes mostly clean, with 
 	some problems with Rcpp/methods