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Package: mzR
Type: Package
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Title: parser for netCDF, mzXML, mzData and mzML and mzIdentML files
(mass spectrometry data)
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Version: 2.19.5
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Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou, Johannes Rainer
Maintainer: Steffen Neumann <sneumann@ipb-halle.de>,
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Laurent Gatto <lg390@cam.ac.uk>,
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Qiang Kou <qkou@umail.iu.edu>
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Description: mzR provides a unified API to the common file formats and
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parsers available for mass spectrometry data. It comes with a
wrapper for the ISB random access parser for mass spectrometry
mzXML, mzData and mzML files. The package contains the
original code written by the ISB, and a subset of the
proteowizard library for mzML and mzIdentML. The netCDF
reading code has previously been used in XCMS.
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License: Artistic-2.0
LazyLoad: yes
Depends: Rcpp (>= 0.10.1), methods, utils
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Imports: Biobase, BiocGenerics (>= 0.13.6), ProtGenerics (>= 1.17.3), ncdf4
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Suggests: msdata (>= 0.15.1), RUnit, mzID, BiocStyle (>= 2.5.19), knitr, XML
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VignetteBuilder: knitr
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LinkingTo: Rcpp, zlibbioc, Rhdf5lib (>= 1.1.4)
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RcppModules: Ramp, Pwiz, Ident
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SystemRequirements: C++11, GNU make
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URL: https://github.com/sneumann/mzR/
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BugReports: https://github.com/sneumann/mzR/issues/
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biocViews: ImmunoOncology, Infrastructure, DataImport, Proteomics, Metabolomics,
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MassSpectrometry
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RoxygenNote: 6.0.1
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