| 84a4b166 |
2014-07-12 Qiang Kou <qkou@umail.iu.edu>
mzid file reading
|
| 5b27a21e |
2014-05-19 Qiang Kou <qkou@umail.iu.edu>
Backend pwiz implemented
|
| 8b215c6b |
2012-08-20 Steffen Neumann <sneumann@ipb-halle.de>
* src/boost/thread/xtime.hpp: applied another patch by Alvaro Cuadros Inostroza
for gcc-4.7.1 compatibility in boost, see e.g. https://bbs.archlinux.org/viewtopic.php?pid=1126282
and https://svn.boost.org/trac/boost/ticket/6940
|
| 2dc70004 |
2012-05-15 Steffen Neumann <sneumann@ipb-halle.de>
* libstdcpp3.hpp: applied patch by Alvaro Cuadros Inostroza
for gcc-4.7 compatibility in boost
|
| d552b6a6 |
2012-04-04 Steffen Neumann <sneumann@ipb-halle.de>
* src/pwiz/data/msdata/RAMPAdapter.cpp (pwiz): Revert hack from 2012-03-26
* src/pwiz/data/msdata/MSData.hpp (pwiz): Add Patch suggested by Brian Pratt,
for a better fix of problem if first spectrum if it has an index==0
|
| c9960e2c |
2012-04-04 Steffen Neumann <sneumann@ipb-halle.de>
* src/ramp.h: enable new I/O on windows
2012-03-31 Steffen Neumann <sneumann@ipb-halle.de>
|
| 46a295d0 |
* src/ramp.h: disable new I/O on windows, should compile,
but will fail unit test with *.gz file
|
| 1581d5e5 |
2012-03-26 Steffen Neumann <sneumann@ipb-halle.de>
* Added unit tests for *.mzdata.gz
|
| f60a8479 |
2012-03-26 Steffen Neumann <sneumann@ipb-halle.de>
* RAMPAdapter.cpp: fix reading the first spectrum
if it has an index==0
2012-03-13 Steffen Neumann <sneumann@ipb-halle.de>
|
| 49b3388d |
* R/ramp.R, src/rampR.cpp: back-ported the old XCMS rampR
interface, which is much faster than cramp
|
| 19be0c64 |
2012-02-28 Steffen Neumann <sneumann@ipb-halle.de>
* src/RcppRamp.cpp: Change the (temporary) Vectors from STL
to Rcpp::*Vector for reduced memory footprint
|
| 2d4b6403 |
2011-12-14 Steffen Neumann <sneumann@ipb-halle.de>
* Updated to pwiz r3148
|
| b0625aa9 |
2011-11-24 Steffen Neumann <sneumann@ipb-halle.de>
* Fixed linking of NetCDF with previous help from
Dan Tenenbaum and Martin Morgan.
|
| 201c2bd8 |
2011-09-16 Laurent Gatto <lg390@cam.ac.uk>
* Changed é to \'e in mzR.bib.
|
| b0625aa9 |
|
| 91f0982e |
2011-09-07 Laurent Gatto <lg390@cam.ac.uk>
* temporary fixed the 'could not find function "getClass"' warning
adding require("methods", ... ) to .onLoad
(see http://comments.gmane.org/gmane.comp.lang.r.rcpp/2140)
but this produces a note about 'Package startup functions should
not change the search path.' But adding methods to the depends
fiels, as advertised in .onAttach, does not fix the original
warning.
* Bump version number to 0.99.2 to track changes.
|
| bcff5d52 |
2011-08-10 Steffen Neumann <sneumann@ipb-halle.de>
* Temporary Fix for "unable to find ... for function "peaks"
by explicitely specifying mzR:: namespace
* Bump version for resubmission to BioC
2011-08-09 Steffen Neumann <sneumann@ipb-halle.de>
* Minor fixes in documentation
* Bump version for resubmission to BioC
2011-08-01 Steffen Neumann <sneumann@ipb-halle.de>
* Added header(), peaks(), length()
and show() for netCDF. This passes all unit tests
for a modified version of xcms, closing Issue #15
2011-07-22 Steffen Neumann <sneumann@ipb-halle.de>
* Non-functional support for CDF
2011-07-11 Laurent Gatto <lg390@cam.ac.uk>
* simplified show method
* rewrote runInfo in R
* Misc changes in doc and vignette
* bumped version to 0.5.5
2011-07-08 Steffen Neumann <sneumann@ipb-halle.de>
* fixed Windows, checked for x64
* bumped version to 0.5.4
2011-07-05 Laurent Gatto <lg390@cam.ac.uk>
* small doc and vignette updates
* peaks("mzRramp","missing") always returns a list
(possibly of length 1) of matrices.
* bumped version to 0.5.2
2011-06-16 Laurent Gatto <lg390@cam.ac.uk>
* updated header("mzRamp","numeric") when
length(numeric) > 1 to return 'flat' data.frame
* bumped verison to 0.5.1
2011-06-10 Laurent Gatto <lg390@cam.ac.uk>
* bumped version to 0.5.0
* implementing backend design and related changes
2011-06-09 Laurent Gatto <lg390@cam.ac.uk>
* bumped version to 0.4.4
* created format specific classes and methods
* added (optional) format argument to openMSfile
* updated documentation
2011-06-01 Laurent Gatto <lg390@cam.ac.uk>
* added fileName slot to mzR class (now version 0.1.3)
* updated openMSfile, fileName and mzR validity to
reflect new mzR@fileName slot.
* update get3Dmap and initializeRamp generics - added
explicit non-dispatching elements.
* added mzR.bib bibtex and Makefile files
* updated docs and vignette
2011-06-01 Steffen Neumann <sneumann@ipb-halle.de>
* fix call to fileName() in instrumentInfo()
* added Makefile for a simple "make" in unitTests
* added man pages
2011-05-31 Laurent Gatto <lg390@cam.ac.uk>
* file extension is checked to avoid retrieving
instrument info for mzdata files (see
https://github.com/sneumann/mzR/issues/5)
* update Rcpp version dependency
* updated unit test
2011-05-27 Laurent Gatto <lg390@cam.ac.uk>
* bumped verssion to 0.4.3
* added further refinements and dummy documenation
* builds, checks and installs fine
2011-05-25 Laurent Gatto <lg390@cam.ac.uk>
* bumped verion to 0.4.1
* cleaned up code and file names, to fit with
Bioconductor's naming schemes.
* created S4 classes and methods
2011-05-01 Laurent Gatto <lg390@cam.ac.uk>
* added cleanup script to version 0.4
2010-12-16 Steffen Neumann <sneumann@ipb-halle.de>
* push 0.3 which adds mzML support, and has (a few)
unit tests. R CMD check finishes mostly clean, with
some problems with Rcpp/methods
|
