1. multiMiR
  2. Graph
Graph of multiMiR
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  • acb90c2 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:59:47 -0400;
  • 65060e9 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 10:59:47 -0400;
  • 24d5ad4 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:56:39 -0400;
  • ba9546f (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:56:39 -0400;
  • 31641b1 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:22 -0400;
  • dd1fe3c (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:16:22 -0400;
  • df19ea4 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:43:26 +0000;
  • 59a9d0c (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:43:26 +0000;
  • 74e644d bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:38:12 +0000;
  • 56f3190 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:38:12 +0000;
  • ce796ed bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:30:26 +0000;
  • 2166ba3 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:30:26 +0000;
  • 445f87b bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:27:41 -0400;
  • 21b8901 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:27:41 -0400;
  • 5e1c0c2 sycning w/ bioconductor Merge branch 'master' of git.bioconductor.org:packages/multiMiR by Matt Mulvahill <mmulvahi@amazon.com> 2020-05-26 12:41:50 -0700;
  • db87e9a Add warning message about target IDs by Spencer Mahaffey <Spencer.Mahaffey@ucdenver.edu> 2020-05-26 11:31:12 -0600;
  • 6d075cc Add warning message about target IDs by Spencer Mahaffey <Spencer.Mahaffey@ucdenver.edu> 2020-05-26 11:17:38 -0600;
  • 59129e5 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:10:28 +0000;
  • 096b1cc (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:10:28 +0000;
  • d9ddea8 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:42:27 -0400;
  • 221900e (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:10:44 -0400;
  • 5bbdba5 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:15:10 -0400;
  • c097006 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:54:08 -0400;
  • 97c5866 bioc handles version bumps I guess by Matt <c-matthew.mulvahill@charter.com> 2019-04-26 00:02:55 -0600;
  • faf96f4 new install process by Matt <c-matthew.mulvahill@charter.com> 2019-04-26 00:02:00 -0600;
  • 0055e82 updated matt's email by Matt <c-matthew.mulvahill@charter.com> 2019-04-26 00:00:56 -0600;
  • 2b3b62a Bioconductor says current version is 1.5 -- bumping from there to 1.6.0 by Matt <c-matthew.mulvahill@charter.com> 2019-04-25 23:50:38 -0600;
  • e3f49c7 x.y.z version bump for new server url and new bioc release by Matt <c-matthew.mulvahill@charter.com> 2019-04-25 23:45:20 -0600;
  • 0b78725 Merge branch 'develop' of https://github.com/KechrisLab/multiMiR into develop by Spencer Mahaffey <Spencer.Mahaffey@ucdenver.edu> 2019-04-25 23:28:06 -0600;
  • 60b6274 Merge branch 'master' into develop by Matt <c-matthew.mulvahill@charter.com> 2019-04-25 22:42:32 -0600;
  • 1d800bc Update server URL by Spencer Mahaffey <Spencer.Mahaffey@ucdenver.edu> 2019-04-25 12:02:21 -0600;
  • cc5feb7 changed README filetype -- (github no longer rendering Rmd files) by Matt Mulvahill (ApexMacbookPro) <c-matthew.mulvahill@charter.com> 2019-01-14 20:34:00 -0700;
  • 32bed63 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:38 -0400;
  • 0863142 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:42:06 -0400;
  • 08acb3e additional updates from BiocInstaller to BiocManager by LiNk-NY <marcel.ramosperez@roswellpark.org> 2018-09-06 15:52:11 +0000;
  • e390eac replace BiocInstaller biocLite mentions with BiocManager by LiNk-NY <mramos09@gmail.com> 2018-08-30 13:52:54 -0400;
  • b3dfbf8 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:43 -0400;
  • 7c92bf7 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:48 -0400;
  • 959c09c (origin/RELEASE_3_6, RELEASE_3_6) Merge remote-tracking branch 'upstream/master' by Matt <mjmulvahill@gmail.com> 2018-02-09 13:41:08 -0700;
  • 3f171aa added tags to gitignore. by Matt <mjmulvahill@gmail.com> 2018-02-09 13:40:58 -0700;
  • 0b524ea fixed bug where stopifnot was testing for wrong object name. by Matt <mjmulvahill@gmail.com> 2018-01-08 15:33:43 -0700;
  • 23d16c5 Merge remote-tracking branch 'kechris/master' by Matt <mjmulvahill@gmail.com> 2018-01-03 17:53:21 -0700;
  • b33cab2 fix for Issue #26. by Matt <mjmulvahill@gmail.com> 2018-01-03 17:52:09 -0700;
  • 7cf1482 Update README.Rmd by Matt Mulvahill <mjmulvahill@gmail.com> 2017-12-12 16:45:38 -0700;
  • 26946ec Update README.Rmd by Matt Mulvahill <mjmulvahill@gmail.com> 2017-11-01 09:46:18 -0600;
  • 5384514 Update README.Rmd by Matt Mulvahill <mjmulvahill@gmail.com> 2017-10-31 16:19:52 -0600;
  • 5b986e2 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:54:33 -0400;
  • 841183b bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:41:52 -0400;
  • ea4c440 fixed outdated S3/S4 section of readme. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-10-09 21:20:54 -0600;
  • a93a634 resolving bioccheck errors. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-10-03 16:07:39 -0600;
  • b4e9d29 Updated readme to instruct installing from bioconductor only. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-10-03 12:58:05 -0600;
  • b4e4c4b Changed S4 object to have a single dataframe slot with added 'type' variable. Instead of 3, one for each type -- requirement of AnnoDbi::select() return type. by Matt Mulvahill (peregrine) <mjmulvahill@gmail.com> 2017-10-02 23:10:37 -0600;
  • 0d30ef6 fixed last instance of old return object. by Matt Mulvahill (peregrine) <mjmulvahill@gmail.com> 2017-10-02 23:03:34 -0600;
  • 18c2c87 partial change to returning single dataframe in @data slot instead of the 3 (validated/predicted/disease). by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-10-02 22:21:41 -0600;
  • 062dc72 Merge branch 'master' into develop by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-10-02 22:21:05 -0600;
  • db01210 cahnged listdata examples to run with limited request. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-10-02 14:41:54 -0600;
  • 8fc8eb8 version bump for bioconductoer submission. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-10-02 10:31:30 -0600;
  • 70b5951 add dontrun{} for list_multimir examples (takes 45s) and fixed cross-reference in vignette. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-30 10:49:38 -0600;
  • 7356311 Finished additions from bioc review. Merge branch 'develop' by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-30 01:36:53 -0600;
  • 22456e4 added text for brian's example, added s4 methods examples, added explanation of s3 and s4 return objects. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-30 01:33:36 -0600;
  • 3444017 added show method and fixed select method. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-30 01:31:25 -0600;
  • c9eca1f Dev branch is ready for Brian's new Bioc example. Merge branch 'exworkflow' into develop by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-29 15:21:52 -0600;
  • 5a5f0ed fixed 'select' method. by Matt Mulvahill (peregrine) <mjmulvahill@gmail.com> 2017-09-29 12:02:18 -0600;
  • 570cbfe select statment not yet working by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-29 01:46:11 -0600;
  • 0d651cf fixed bug in last commit -- removed dplyr import. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-29 01:32:47 -0600;
  • da9183f added select -- bug with importFroms for generic AnnoDbi methods. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-09-29 01:28:25 -0600;
  • af94629 got documentation to compile for s4 class/methods, but not sure its right yet. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-28 22:55:56 -0600;
  • 96eb1d3 working columns and keys methods -- documentation not right yet. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-28 17:46:34 -0600;
  • 4eb7af4 switched all returned cols to character from factors, except the databse name (this occurs elsewhere). by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-28 17:45:23 -0600;
  • 4ba9436 undid accidental change to vignette. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-28 17:13:53 -0600;
  • 26fc098 added s4 class for return object (mmquery_bioc), added legacy.out option to get_multimir, and cleaned up imports by using importFrom and removing namespace :: calls. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-28 09:29:50 -0600;
  • 75ea119 fixed print.mmquery s3 print method. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-26 21:36:25 -0600;
  • 9836229 added edgeR to Suggests and minor cleanup on example. by Matt Mulvahill (peregrine) <mjmulvahill@gmail.com> 2017-09-26 21:26:28 -0600;
  • add8af5 added Brian's example downstream use of this package + data used. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-19 23:02:26 -0600;
  • 0e0e9c9 moved tibble to imports from suggested in DESCRIPTION and imported specific functions used. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-19 22:59:44 -0600;
  • c318665 Fixed export functions using dots instead of underscores. Fixed imports not in NAMESPACE. Merge branch 'develop' by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-18 18:09:22 -0600;
  • 50e78d4 Explicitly imported necessary external functions -- fixes @vobencha review comment by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-18 18:07:42 -0600;
  • fa56d6f switched get_multimir fn to have underscore isntead of period. Also updated vignette with new underscore names and added deprecation note in man files. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-18 18:06:32 -0600;
  • cb74085 switched search_multimir fn to have underscore isntead of period. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-18 15:14:16 -0600;
  • 8baf8a1 switched list_multimir fn to have underscore isntead of period. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-18 15:03:32 -0600;
  • 4b6f6ce Merge branch 'master' into develop by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-18 15:00:53 -0600;
  • cb11e9d upping the version -- test if bioc issue will reopen. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-09-18 11:39:50 -0600;
  • ff0e447 fixed broken split_by fn -- dropped by purrr in new version, so added here as a utility function. by Matt Mulvahill (peregrine) <mjmulvahill@gmail.com> 2017-08-07 12:05:11 -0600;
  • a2eec35 Lower required R version to 3.0 to match RCurl. See Issue #20. by Matt Mulvahill (peregrine) <mjmulvahill@gmail.com> 2017-08-07 09:26:35 -0600;
  • f560b69 Added note to README on current public release version. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-05-25 13:52:51 -0600;
  • 6712962 Reverting sqltables changes in previous commit -- caused as-yet un-ID'd error in vignette example1 (2nd dataset queried). by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-05-25 13:51:05 -0600;
  • 9d4594d restructed some if/else logic to minimize times same logic is evaluated and to reduce line lengths. Still waiting on bioc-devel listserv confimration email. by Matt Mulvahill (annapurna) <matthew.mulvahill@ucdenver.edu> 2017-05-25 12:13:19 -0600;
  • 013511b wrapped more lines at 80 chars and minor restructured sql_validated and sql_predicted functions. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-23 10:45:17 -0600;
  • 9cf27aa Version bump (v0.99.3) -- more bioc-devel warnings/errors resolved. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 17:16:19 -0600;
  • 6bcb12f added @value for deprecate_args. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 17:15:12 -0600;
  • 919229e wrapped more lines (externallinks.R) and replaced tabs w/ 4 spaces. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 16:31:07 -0600;
  • 633711b Rebuilt documentation -- by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 13:50:44 -0600;
  • 2219fc0 Bumped to version 0.99.1 -- fixes made to resolve Bioc CHECK errors and attempt to retrigger build on Bioconductor submission. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 13:00:25 -0600;
  • ceeae67 Attempted resolution of Bioconductor's CHECK errors -- Merge branch 'develop' by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 12:53:51 -0600;
  • aaa62d7 wrapped most lines at 80 chars. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 12:49:16 -0600;
  • f210b91 changed add.multimir.links to be an internal function; added examples to tabletypes man page. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 12:40:59 -0600;
  • e38cde4 added @return documentation to each man page. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 12:30:54 -0600;
  • 3d4e19a removed myurlencode -- using a base r function for this (i believe url()). by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 12:00:30 -0600;
  • ed10c2b Merge branch 'master' into develop by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 11:24:12 -0600;
  • 7dc6cc3 added req'd version of purrr dependency. by Matt Mulvahill (MtEvans) <matthew.mulvahill@ucdenver.edu> 2017-05-22 11:22:46 -0600;