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DESCRIPTION 100644 1 kb
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README.Rmd 100644 2 kb
README.Rmd
[![Build Status](https://travis-ci.com/KechrisLab/multiMiR.svg?token=Vzy3B4WH2SvZ4ybN4Uzy&branch=master)](https://travis-ci.com/KechrisLab/multiMiR) # multiMiR --- The [*multiMiR* web server](http://multimir.ucdenver.edu) hosts a database containing miRNA-target interactions from external databases. The package *multiMiR* provides functions to communicate with the *multiMiR* web server and its database. Note this repository is the development version. Public releases are available on the web server's [website](http://multimir.ucdenver.edu) or via versioned tags (e.g. v2.1) in this repo. ```{r} # To install multiMiR, first install suggested package BiocStyle source("https://bioconductor.org/biocLite.R") biocLite() biocLite("BiocStyle") # Now install devtools (for installing from GitHub repositories) install.packages("devtools") library(devtools) # Now install the development version of the multiMiR package devtools::install_github("kechrislab/multimir") # To install a public release, use the `ref=` option to select the tag of the # release version devtools::install_github("kechrislab/multimir", ref = "v2.0") ``` Terminology used in package: - *sql components*: SELECT or FROM or ON or WHERE... etc. (mmsql\_components class) - *sql features*: specific to this DB and the options used to generate meaningful queries (i.e. mirna; conserved; table type: validated, predicted; etc.) - *sql*: a complete sql statement (mmsql class) - *query*: table result of sql statement (mmquery class), class includes sql statement and parts