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DESCRIPTION 100644 1 kb
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NAMESPACE 100644 1 kb
README.md 100644 2 kb
README.md
# multiMiR [![Build Status](https://travis-ci.org/KechrisLab/multiMiR.svg?branch=master)](https://travis-ci.org/KechrisLab/multiMiR) [![codecov](https://codecov.io/gh/KechrisLab/multiMiR/branch/master/graph/badge.svg)](https://codecov.io/gh/KechrisLab/multiMiR) [![biocdownloads](https://bioconductor.org/shields/downloads/multiMiR.svg)](https://bioconductor.org/shields/downloads/multiMiR.svg) [![inBioc](https://bioconductor.org/shields/years-in-bioc/multiMiR.svg)](https://bioconductor.org/packages/release/bioc/html/multiMiR.html) --- The [*multiMiR* web server](http://multimir.org) hosts a database containing miRNA-target interactions from external databases. The package *multiMiR* provides functions to communicate with the *multiMiR* web server and its database. Note this repository is where active development occurs (think 'nightly' builds). The recommended release and devel versions are available via Bioconductor (as of Bioconductor 3.6). ```{r} # To install multiMiR, use BiocManager::install() if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install() BiocManager::install("multiMiR") ``` Terminology used in package: - *sql components*: SELECT or FROM or ON or WHERE... etc. (mmsql\_components class) - *sql features*: specific to this DB and the options used to generate meaningful queries (i.e. mirna; conserved; table type: validated, predicted; etc.) - *sql*: a complete sql statement (mmsql class) - *query*: table result of sql statement (mmquery class), class includes sql statement and parts.