Name Mode Size
..
alignment 040000
fileInput 040000
general 040000
interface 040000
multipleAlign 040000
pairwise 040000
substitutionMatrix 040000
tree 040000
Clustal.cpp 100644 51 kb
Clustal.h 100644 3 kb
Help.cpp 100644 38 kb
Help.h 100644 1 kb
Makefile.am 100644 4 kb
Makefile.in 100644 124 kb
RClustalW.cpp 100644 23 kb
RClustalW.h 100644 1 kb
RClustalWMain.cpp 100644 2 kb
RClustalWMain.h 100644 0 kb
clustalw_version.h 100644 0 kb
clustalw_version.h.in 100644 0 kb
config.h.in 100644 2 kb
main.cpp 100644 2 kb
README.md
# msa: An R Package for Multiple Sequence Alignment The 'msa' package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade. This is the source code repository. The package can be installed from [Bioconductor](https://bioconductor.org/packages/release/bioc/html/msa.html). Further information and installation instructions are also available from http://www.bioinf.jku.at/software/msa/. Although the package is maintained by Ulrich Bodenhofer, the package itself has been implemented mainly by Enrico Bonatesta and Christoph Kainrath-Horejs.