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Makefile.am 100644 1 kb
Makefile.in 100644 16 kb
general.h 100644 3 kb
hash-C.h 100644 18 kb
hash.h 100644 8 kb
hhalign.cpp 100644 62 kb
hhalign.h 100644 1 kb
hhalignment-C.h 100644 127 kb
hhalignment.h 100644 6 kb
hhdecl-C.h 100644 16 kb
hhfullalignment-C.h 100644 20 kb
hhfullalignment.h 100644 2 kb
hhfunc-C.h 100644 44 kb
hhfunc.h 100644 1 kb
hhhalfalignment-C.h 100644 12 kb
hhhalfalignment.h 100644 4 kb
hhhit-C.h 100644 80 kb
hhhit.h 100644 9 kb
hhhitlist-C.h 100644 105 kb
hhhitlist.h 100644 5 kb
hhhmm-C.h 100644 93 kb
hhhmm.h 100644 9 kb
hhmatrices-C.h 100644 41 kb
hhutil-C.h 100644 30 kb
list-C.h 100644 18 kb
list.h 100644 7 kb
util-C.h 100644 27 kb
README.md
# msa: An R Package for Multiple Sequence Alignment The 'msa' package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade. This is the source code repository. The package can be installed from [Bioconductor](https://bioconductor.org/packages/release/bioc/html/msa.html). Further information and installation instructions are also available from http://www.bioinf.jku.at/software/msa/. Although the package is maintained by Ulrich Bodenhofer, the package itself has been implemented mainly by Enrico Bonatesta and Christoph Kainrath-Horejs.