Name Mode Size
m4 040000
src 040000
windows 040000
COPYING 100644 34 kb
COPYING.LESSER 100644 7 kb 100644 0 kb 100644 21 kb
aclocal.m4 100644 34 kb
clustalw_help 100644 33 kb
config.guess 100755 45 kb
config.sub 100755 33 kb
configure 100755 188 kb 100644 4 kb
depcomp 100755 18 kb
install-sh 100755 13 kb
missing 100755 11 kb
msaMakefile 100755 3 kb 100755 3 kb
# msa: An R Package for Multiple Sequence Alignment The 'msa' package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade. This is the source code repository. The package can be installed from [Bioconductor]( Further information and installation instructions are also available from Although the package is maintained by Ulrich Bodenhofer, the package itself has been implemented mainly by Enrico Bonatesta and Christoph Kainrath-Horejs.