Name Mode Size
ClustalOmega 040000
ClustalW 040000
Muscle 040000
gc-7.2 040000
Makevars 100644 2 kb 100644 2 kb
R_init_msa.cpp 100644 1 kb
SplitCharVector2List.cpp 100644 0 kb
SplitCharVector2List.h 100644 0 kb
SplitCharVector2Matrix.cpp 100644 1 kb
SplitCharVector2Matrix.h 100644 0 kb
# msa: An R Package for Multiple Sequence Alignment The 'msa' package provides a unified R/Bioconductor interface to the multiple sequence alignment algorithms ClustalW, ClustalOmega, and Muscle. All three algorithms are integrated in the package, therefore, they do not depend on any external software tools and are available for all major platforms. The multiple sequence alignment algorithms are complemented by a function for pretty-printing multiple sequence alignments using the LaTeX package TeXshade. This is the source code repository. The package can be installed from [Bioconductor]( Further information and installation instructions are also available from Although the package is maintained by Ulrich Bodenhofer, the package itself has been implemented mainly by Enrico Bonatesta and Christoph Kainrath-Horejs.