Browse code

add package to the repository

msa


git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/msa@102253 bc3139a8-67e5-0310-9ffc-ced21a209358

Sonali Arora authored on 10/04/2015 00:12:33
Showing1 changed files
1 1
new file mode 100644
... ...
@@ -0,0 +1,30 @@
1
+/* -*- mode: c; tab-width: 4; c-basic-offset: 4; indent-tabs-mode: nil -*- */
2
+
3
+/*********************************************************************
4
+ * Clustal Omega - Multiple sequence alignment
5
+ *
6
+ * Copyright (C) 2010 University College Dublin
7
+ *
8
+ * Clustal-Omega is free software; you can redistribute it and/or
9
+ * modify it under the terms of the GNU General Public License as
10
+ * published by the Free Software Foundation; either version 2 of the
11
+ * License, or (at your option) any later version.
12
+ *
13
+ * This file is part of Clustal-Omega.
14
+ *
15
+ ********************************************************************/
16
+
17
+/*
18
+ * RCS $Id: hhalign.h 284 2013-06-12 10:10:11Z fabian $
19
+ */
20
+
21
+
22
+extern int 
23
+hhalign(char **ppcFirstProf, int iFirstCnt, double *pdWeightsL, 
24
+        char **ppcSecndProf, int iSecndCnt, double *pdWeightsR, 
25
+        double *dScore_p, hmm_light *prHMM, 
26
+        char *pcPrealigned1, char *pcRepresent1,
27
+        char *pcPrealigned2, char *pcRepresent2,
28
+        hhalign_para rHhalignPara, hhalign_scores *rHHscores, 
29
+        int iFlag, int iVerbosity,
30
+        char zcAux[], char zcError[]);